Wall clock time and date at job start Tue Mar 31 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.09006 * 109.49718 * 305.05761 * 3 2 1 5 5 C 1.53195 * 109.50107 * 65.15724 * 3 2 1 6 6 N 1.46935 * 108.77245 * 174.58806 * 5 3 2 7 7 C 1.34770 * 120.62903 * 126.41582 * 6 5 3 8 8 O 1.21286 * 119.99969 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00178 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47045 * 179.97438 * 9 7 6 11 11 C 1.34780 * 119.99610 * 179.97438 * 10 9 7 12 12 C 1.50693 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21287 * 120.00170 * 0.02562 * 11 10 9 14 14 C 1.46925 * 118.73777 * 306.39023 * 6 5 3 15 15 C 1.53156 * 108.76964 * 53.61028 * 14 6 5 16 16 C 1.53036 * 109.33017 * 305.35397 * 15 14 6 17 17 H 1.09007 * 109.46211 * 181.38020 * 16 15 14 18 18 N 1.46496 * 109.46261 * 301.36095 * 16 15 14 19 19 C 1.36945 * 119.99718 * 275.02605 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 28 28 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 30 30 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 31 31 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 32 32 H 1.09001 * 109.58413 * 294.37224 * 5 3 2 33 33 H 1.08994 * 109.58441 * 54.65749 * 5 3 2 34 34 H 1.08994 * 109.46805 * 300.00073 * 9 7 6 35 35 H 1.09004 * 109.47027 * 59.99674 * 9 7 6 36 36 H 0.96993 * 120.00156 * 359.97438 * 10 9 7 37 37 H 1.09003 * 109.47158 * 60.00735 * 12 11 10 38 38 H 1.09002 * 109.47240 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47576 * 300.00203 * 12 11 10 40 40 H 1.09001 * 109.58193 * 173.40333 * 14 6 5 41 41 H 1.09005 * 109.58520 * 293.67952 * 14 6 5 42 42 H 1.09006 * 109.47941 * 185.40260 * 15 14 6 43 43 H 1.09005 * 109.50334 * 65.31890 * 15 14 6 44 44 H 0.96996 * 120.00499 * 95.02336 * 18 16 15 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9822 -0.8411 5 6 1.6383 2.1269 1.3104 6 7 2.2449 3.4646 1.3505 7 6 1.4855 4.5566 1.5678 8 8 0.2895 4.4406 1.7322 9 6 2.1225 5.9218 1.6066 10 7 1.0931 6.9341 1.8552 11 6 1.4330 8.2360 1.9320 12 6 0.3741 9.2774 2.1871 13 8 2.5910 8.5696 1.7947 14 6 3.6950 3.5890 1.1497 15 6 4.0733 2.8883 -0.1586 16 6 3.5652 1.4451 -0.1256 17 1 3.8546 0.9371 -1.0456 18 7 4.1506 0.7477 1.0220 19 6 5.3882 0.1715 0.9146 20 1 5.9325 0.2310 -0.0163 21 6 5.9431 -0.4888 2.0021 22 7 5.2795 -0.5616 3.1365 23 14 7.6311 -1.2754 1.8553 24 1 7.9945 -1.9120 3.1467 25 1 7.6063 -2.3046 0.7852 26 1 8.6347 -0.2342 1.5176 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5530 2.2162 1.3583 33 1 1.9941 1.5366 2.1548 34 1 2.8644 5.9539 2.4044 35 1 2.6072 6.1239 0.6514 36 1 0.1670 6.6673 1.9646 37 1 -0.1116 9.0754 3.1419 38 1 0.8348 10.2649 2.2153 39 1 -0.3670 9.2454 1.3885 40 1 3.9667 4.6430 1.0917 41 1 4.2207 3.1214 1.9823 42 1 5.1575 2.8899 -0.2716 43 1 3.6189 3.4149 -0.9980 44 1 3.6616 0.6941 1.8580 45 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670561991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:19 Heat of formation + Delta-G solvation = -70.769945 kcal Electronic energy + Delta-G solvation = -25145.053856 eV Core-core repulsion = 21583.354301 eV Total energy + Delta-G solvation = -3561.699555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45389 -39.43686 -37.92618 -34.58886 -34.54860 -33.77363 -31.76163 -30.72665 -29.51186 -28.83249 -27.14521 -24.62234 -23.81712 -23.50286 -20.87496 -20.76788 -19.85786 -18.39098 -17.52342 -17.30292 -16.68470 -16.08779 -16.03464 -15.29900 -15.09290 -14.65618 -14.31395 -14.03845 -13.78950 -13.67460 -13.32751 -13.28745 -12.99971 -12.83112 -12.76803 -12.52946 -12.28245 -12.17460 -11.78133 -11.45677 -11.13444 -11.00091 -10.84589 -10.76403 -10.36988 -10.32640 -10.23186 -10.12858 -9.84763 -9.75501 -9.59050 -9.32564 -8.95801 -8.35907 -7.01923 -5.82459 -3.11259 2.44957 2.60663 2.76907 3.36670 3.40122 3.45514 3.46145 4.42683 4.54594 4.65236 5.01820 5.06617 5.09579 5.18721 5.26140 5.27084 5.29840 5.43529 5.49234 5.55016 5.58875 5.64398 5.74444 5.75767 5.85645 6.02945 6.09789 6.10402 6.15603 6.29074 6.33194 6.36800 6.50980 6.55678 6.65892 6.71135 6.88535 6.94014 7.33471 7.53712 7.65135 8.03005 8.14956 8.35967 9.47708 10.03561 10.38541 11.39739 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.003972 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.769895 B = 7048.141055 C = 8187.432625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.508 3.492 8 O -0.554 6.554 9 C 0.099 3.901 10 N -0.718 5.718 11 C 0.511 3.489 12 C -0.172 4.172 13 O -0.550 6.550 14 C 0.109 3.891 15 C -0.150 4.150 16 C 0.178 3.822 17 H 0.052 0.948 18 N -0.718 5.718 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.287 1.287 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.412 0.588 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 12.106 -4.459 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.324 5.324 7 C 0.295 3.705 8 O -0.434 6.434 9 C -0.028 4.028 10 N -0.374 5.374 11 C 0.298 3.702 12 C -0.231 4.231 13 O -0.427 6.427 14 C -0.013 4.013 15 C -0.191 4.191 16 C 0.068 3.932 17 H 0.070 0.930 18 N -0.361 5.361 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.214 1.214 26 H -0.213 1.213 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.249 0.751 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.429 12.176 -4.497 16.651 hybrid contribution 0.589 -0.688 0.276 0.947 sum -9.840 11.488 -4.221 15.704 Atomic orbital electron populations 1.21855 0.96811 1.01078 1.01306 1.21417 0.94264 0.95678 1.03451 1.21754 0.97453 0.96195 0.96883 0.91556 1.21738 0.98792 0.81291 0.98556 1.48082 1.08952 1.06495 1.68901 1.20369 0.86994 0.86207 0.76910 1.90643 1.14800 1.86369 1.51586 1.21118 0.91606 0.85962 1.04104 1.45819 1.12254 1.05869 1.73479 1.20827 0.90311 0.83049 0.76044 1.21889 0.98662 0.98489 1.04091 1.90739 1.20756 1.81292 1.49937 1.21840 0.78709 1.00351 1.00448 1.22527 1.02058 0.99284 0.95259 1.20227 0.89671 0.90629 0.92722 0.93024 1.42467 1.19102 1.63992 1.10532 1.19167 0.93627 1.27196 0.97070 0.91287 1.24700 0.98548 1.01394 0.96001 1.69636 1.38186 1.47972 1.02244 0.86312 0.84331 0.79200 0.76573 1.21807 1.21370 1.21328 0.93388 0.93128 0.92819 0.91962 0.90452 0.89489 0.90490 0.88344 0.88436 0.75058 0.89258 0.88877 0.89299 0.91002 0.89248 0.90497 0.93213 0.78113 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 3 C -0.10 -1.59 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 5 C 0.12 1.88 5.03 -3.70 -0.02 1.86 16 6 N -0.59 -8.93 2.97 -172.78 -0.51 -9.45 16 7 C 0.51 7.38 7.77 -10.99 -0.09 7.30 16 8 O -0.55 -9.14 15.08 5.55 0.08 -9.06 16 9 C 0.10 1.23 4.50 -5.19 -0.02 1.21 16 10 N -0.72 -8.06 5.53 -61.47 -0.34 -8.40 16 11 C 0.51 5.83 7.94 -10.99 -0.09 5.75 16 12 C -0.17 -1.17 10.32 36.00 0.37 -0.80 16 13 O -0.55 -8.57 17.09 5.55 0.09 -8.47 16 14 C 0.11 1.63 6.08 -3.73 -0.02 1.61 16 15 C -0.15 -2.36 5.78 -26.63 -0.15 -2.51 16 16 C 0.18 3.16 2.53 -67.89 -0.17 2.99 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -15.93 3.73 -53.38 -0.20 -16.13 16 19 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 20 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -26.60 13.06 55.49 0.72 -25.88 16 23 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 32 H 0.09 1.38 5.73 -51.93 -0.30 1.08 16 33 H 0.08 1.38 6.64 -51.93 -0.35 1.03 16 34 H 0.10 1.22 7.94 -51.93 -0.41 0.81 16 35 H 0.10 1.16 7.69 -51.93 -0.40 0.76 16 36 H 0.41 4.22 7.44 -40.82 -0.30 3.92 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.90 5.93 -51.93 -0.31 0.59 16 41 H 0.09 1.60 7.75 -51.93 -0.40 1.20 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.38 9.14 5.95 -40.82 -0.24 8.90 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.79 357.63 -7.42 -38.21 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -7.23 Total: 11.75 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.41 Total: 5.55 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.33 Total: -59.85 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.18 Total: -17.53 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.79 -7.42 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.562 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds