Wall clock time and date at job start Tue Mar 31 2020 03:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.09006 * 109.49718 * 305.05761 * 3 2 1 5 5 C 1.53195 * 109.50107 * 65.15724 * 3 2 1 6 6 N 1.46935 * 108.77245 * 174.58806 * 5 3 2 7 7 C 1.34770 * 120.62903 * 126.41582 * 6 5 3 8 8 O 1.21286 * 119.99969 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00178 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47045 * 179.97438 * 9 7 6 11 11 C 1.34780 * 119.99610 * 179.97438 * 10 9 7 12 12 C 1.50693 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21287 * 120.00170 * 0.02562 * 11 10 9 14 14 C 1.46925 * 118.73777 * 306.39023 * 6 5 3 15 15 C 1.53156 * 108.76964 * 53.61028 * 14 6 5 16 16 C 1.53036 * 109.33017 * 305.35397 * 15 14 6 17 17 H 1.09007 * 109.46211 * 181.38020 * 16 15 14 18 18 N 1.46496 * 109.46261 * 301.36095 * 16 15 14 19 19 C 1.36945 * 119.99718 * 275.02605 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 28 28 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 30 30 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 31 31 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 32 32 H 1.09001 * 109.58413 * 294.37224 * 5 3 2 33 33 H 1.08994 * 109.58441 * 54.65749 * 5 3 2 34 34 H 1.08994 * 109.46805 * 300.00073 * 9 7 6 35 35 H 1.09004 * 109.47027 * 59.99674 * 9 7 6 36 36 H 0.96993 * 120.00156 * 359.97438 * 10 9 7 37 37 H 1.09003 * 109.47158 * 60.00735 * 12 11 10 38 38 H 1.09002 * 109.47240 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47576 * 300.00203 * 12 11 10 40 40 H 1.09001 * 109.58193 * 173.40333 * 14 6 5 41 41 H 1.09005 * 109.58520 * 293.67952 * 14 6 5 42 42 H 1.09006 * 109.47941 * 185.40260 * 15 14 6 43 43 H 1.09005 * 109.50334 * 65.31890 * 15 14 6 44 44 H 0.96996 * 120.00499 * 95.02336 * 18 16 15 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9822 -0.8411 5 6 1.6383 2.1269 1.3104 6 7 2.2449 3.4646 1.3505 7 6 1.4855 4.5566 1.5678 8 8 0.2895 4.4406 1.7322 9 6 2.1225 5.9218 1.6066 10 7 1.0931 6.9341 1.8552 11 6 1.4330 8.2360 1.9320 12 6 0.3741 9.2774 2.1871 13 8 2.5910 8.5696 1.7947 14 6 3.6950 3.5890 1.1497 15 6 4.0733 2.8883 -0.1586 16 6 3.5652 1.4451 -0.1256 17 1 3.8546 0.9371 -1.0456 18 7 4.1506 0.7477 1.0220 19 6 5.3882 0.1715 0.9146 20 1 5.9325 0.2310 -0.0163 21 6 5.9431 -0.4888 2.0021 22 7 5.2795 -0.5616 3.1365 23 14 7.6311 -1.2754 1.8553 24 1 7.9945 -1.9120 3.1467 25 1 7.6063 -2.3046 0.7852 26 1 8.6347 -0.2342 1.5176 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5530 2.2162 1.3583 33 1 1.9941 1.5366 2.1548 34 1 2.8644 5.9539 2.4044 35 1 2.6072 6.1239 0.6514 36 1 0.1670 6.6673 1.9646 37 1 -0.1116 9.0754 3.1419 38 1 0.8348 10.2649 2.2153 39 1 -0.3670 9.2454 1.3885 40 1 3.9667 4.6430 1.0917 41 1 4.2207 3.1214 1.9823 42 1 5.1575 2.8899 -0.2716 43 1 3.6189 3.4149 -0.9980 44 1 3.6616 0.6941 1.8580 45 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670561991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:18 Heat of formation + Delta-G solvation = -91.763348 kcal Electronic energy + Delta-G solvation = -25145.964198 eV Core-core repulsion = 21583.354301 eV Total energy + Delta-G solvation = -3562.609897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63811 -40.47689 -39.22644 -35.96157 -35.62247 -35.27962 -33.42102 -31.54020 -31.02342 -30.10369 -28.21912 -26.05932 -25.25280 -25.03972 -22.17519 -21.67730 -21.06567 -19.75187 -19.25014 -18.50652 -17.79252 -17.15134 -17.10974 -16.58767 -16.36815 -16.03321 -15.78342 -15.56444 -15.03896 -14.81221 -14.76171 -14.46377 -14.15647 -14.06812 -13.79731 -13.61176 -13.30424 -13.08787 -12.93735 -12.87999 -12.81128 -12.63960 -12.37116 -12.17876 -12.11525 -11.83899 -11.58358 -11.44633 -11.12763 -11.09130 -11.01731 -10.78015 -10.28326 -9.66603 -8.91152 -7.87997 -5.13855 1.40513 1.50631 1.51114 1.56947 1.60883 1.70374 2.36789 2.60471 3.28954 3.45966 3.78869 3.86450 3.92447 4.02035 4.08831 4.20558 4.25557 4.31676 4.35515 4.44877 4.47492 4.56968 4.60819 4.68875 4.69455 4.83930 4.87702 4.99873 5.04032 5.07491 5.18083 5.20413 5.24468 5.29239 5.30048 5.41204 5.51853 5.60731 5.65620 6.32366 6.33973 6.48667 6.93836 7.17628 7.41795 8.18252 8.41374 9.34912 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.003972 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.769895 B = 7048.141055 C = 8187.432625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.091 4.091 4 H 0.087 0.913 5 C 0.125 3.875 6 N -0.594 5.594 7 C 0.512 3.488 8 O -0.572 6.572 9 C 0.103 3.897 10 N -0.715 5.715 11 C 0.507 3.493 12 C -0.164 4.164 13 O -0.596 6.596 14 C 0.115 3.885 15 C -0.143 4.143 16 C 0.171 3.829 17 H 0.047 0.953 18 N -0.724 5.724 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.072 4.072 22 N -0.968 5.968 23 Si 0.962 3.038 24 H -0.303 1.303 25 H -0.283 1.283 26 H -0.280 1.280 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.418 0.582 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.374 0.626 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.907 13.713 -5.988 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.105 0.895 5 C 0.002 3.998 6 N -0.325 5.325 7 C 0.301 3.699 8 O -0.452 6.452 9 C -0.025 4.025 10 N -0.370 5.370 11 C 0.297 3.703 12 C -0.223 4.223 13 O -0.477 6.477 14 C -0.007 4.007 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.065 0.935 18 N -0.365 5.365 19 C -0.359 4.359 20 H 0.093 0.907 21 C -0.264 4.264 22 N -0.619 5.619 23 Si 0.792 3.208 24 H -0.230 1.230 25 H -0.209 1.209 26 H -0.207 1.207 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.257 0.743 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.553 13.805 -6.076 18.999 hybrid contribution 0.858 -1.161 0.695 1.602 sum -10.695 12.644 -5.381 17.413 Atomic orbital electron populations 1.21784 0.94639 1.01919 1.01954 1.21341 0.96146 0.95208 1.01720 1.21660 0.95694 0.96484 0.97279 0.89469 1.21565 0.98848 0.81609 0.97751 1.48073 1.08940 1.06386 1.69137 1.20668 0.86667 0.86642 0.75945 1.90635 1.15644 1.86724 1.52227 1.21066 0.91843 0.84877 1.04673 1.45860 1.12266 1.05772 1.73106 1.21659 0.90592 0.83456 0.74638 1.21921 0.97653 0.96735 1.05958 1.90720 1.22950 1.81887 1.52175 1.21734 0.78406 1.01717 0.98834 1.22402 1.01583 0.97794 0.96579 1.20463 0.91166 0.91408 0.90731 0.93478 1.42575 1.18243 1.64283 1.11441 1.19523 0.94394 1.25277 0.96707 0.90746 1.25356 1.01697 1.03227 0.96121 1.69790 1.39573 1.49768 1.02800 0.85381 0.81092 0.78425 0.75858 1.22955 1.20909 1.20655 0.91736 0.92305 0.93043 0.92034 0.93779 0.89096 0.93238 0.88356 0.87406 0.74317 0.87225 0.88699 0.86989 0.88063 0.92549 0.91436 0.90361 0.79286 0.94423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.67 71.98 0.70 -2.86 16 2 C -0.11 -3.20 5.19 30.59 0.16 -3.04 16 3 C -0.09 -2.73 2.14 -10.71 -0.02 -2.75 16 4 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 5 C 0.12 3.92 5.03 86.36 0.43 4.36 16 6 N -0.59 -17.26 2.97 -818.95 -2.43 -19.69 16 7 C 0.51 14.04 7.77 87.66 0.68 14.72 16 8 O -0.57 -17.86 15.08 -3.05 -0.05 -17.91 16 9 C 0.10 2.35 4.50 85.63 0.39 2.74 16 10 N -0.71 -14.56 5.53 -466.79 -2.58 -17.15 16 11 C 0.51 10.63 7.94 87.65 0.70 11.32 16 12 C -0.16 -1.76 10.32 71.23 0.74 -1.03 16 13 O -0.60 -17.96 17.09 -3.05 -0.05 -18.01 16 14 C 0.12 3.35 6.08 86.35 0.52 3.88 16 15 C -0.14 -4.25 5.78 30.66 0.18 -4.07 16 16 C 0.17 5.95 2.53 45.02 0.11 6.06 16 17 H 0.05 1.70 8.08 -2.38 -0.02 1.68 16 18 N -0.72 -32.63 3.73 -322.81 -1.20 -33.83 16 19 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 20 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 21 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.97 -57.01 13.06 21.65 0.28 -56.72 16 23 Si 0.96 44.87 29.55 68.60 2.03 46.90 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.63 7.70 -2.39 -0.02 1.61 16 32 H 0.09 2.80 5.73 -2.39 -0.01 2.79 16 33 H 0.05 1.84 6.64 -2.39 -0.02 1.82 16 34 H 0.10 2.30 7.94 -2.39 -0.02 2.28 16 35 H 0.11 2.29 7.69 -2.38 -0.02 2.27 16 36 H 0.42 7.61 7.44 -92.71 -0.69 6.92 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.03 8.12 -2.39 -0.02 1.01 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.10 2.35 5.93 -2.39 -0.01 2.33 16 41 H 0.06 2.04 7.75 -2.38 -0.02 2.03 16 42 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 43 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.37 18.47 5.95 -92.71 -0.55 17.92 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -67.38 357.63 1.63 -65.75 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -0.24 Total: 35.61 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 5.88 Total: 15.06 kcal Atomic # 7 Polarization: -121.46 SS G_CDS: -5.93 Total: -127.40 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -0.10 Total: -35.92 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.38 1.63 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670561991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.017 kcal (2) G-P(sol) polarization free energy of solvation -67.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds