Wall clock time and date at job start Tue Mar 31 2020 03:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47573 * 2 1 4 4 H 1.08998 * 109.47205 * 305.00451 * 3 2 1 5 5 C 1.53005 * 109.47146 * 65.00244 * 3 2 1 6 6 C 1.50705 * 109.47270 * 185.00133 * 3 2 1 7 7 O 1.21277 * 119.99936 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99573 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99623 * 179.97438 * 8 6 3 10 10 C 1.53001 * 109.47318 * 175.58674 * 9 8 6 11 11 N 1.46905 * 115.54932 * 279.62026 * 10 9 8 12 12 C 1.46893 * 110.99896 * 294.62287 * 11 10 9 13 13 C 1.50697 * 109.47183 * 179.59862 * 12 11 10 14 14 O 1.21290 * 120.00475 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99882 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99573 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00594 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99586 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46946 * 60.00179 * 20 18 16 22 22 H 1.48497 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47433 * 300.00154 * 20 18 16 24 24 C 1.52999 * 117.50151 * 133.94528 * 10 9 8 25 25 C 1.52999 * 117.49656 * 65.28380 * 10 9 8 26 26 H 1.09007 * 109.46942 * 299.99875 * 1 2 3 27 27 H 1.08997 * 109.46916 * 59.99764 * 1 2 3 28 28 H 1.08997 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47082 * 240.00078 * 2 1 3 30 30 H 1.09000 * 109.47415 * 120.00173 * 2 1 3 31 31 H 1.08995 * 109.47073 * 59.99531 * 5 3 2 32 32 H 1.09002 * 109.46458 * 300.00059 * 5 3 2 33 33 H 1.08997 * 109.47290 * 180.02562 * 5 3 2 34 34 H 0.96993 * 120.00671 * 359.97438 * 8 6 3 35 35 H 1.08994 * 109.47460 * 295.59010 * 9 8 6 36 36 H 1.09006 * 109.46688 * 55.58897 * 9 8 6 37 37 H 1.00907 * 110.99595 * 170.67266 * 11 10 9 38 38 H 1.09000 * 109.47516 * 299.59890 * 12 11 10 39 39 H 1.08997 * 109.47125 * 59.59742 * 12 11 10 40 40 H 0.97000 * 119.99932 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00009 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.49357 * 359.97438 * 24 10 9 43 43 H 1.08995 * 117.49691 * 145.02327 * 24 10 9 44 44 H 1.08998 * 117.50114 * 214.97924 * 25 10 9 45 45 H 1.08995 * 117.49952 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6354 2.1265 1.3074 6 6 3.5420 1.4441 -0.1239 7 8 4.1451 0.3950 -0.2038 8 7 4.2150 2.6116 -0.1448 9 6 5.6751 2.6133 -0.2647 10 6 6.1762 4.0547 -0.3748 11 7 6.0685 4.6628 -1.7078 12 6 6.9425 3.9792 -2.6704 13 6 6.7979 4.6229 -4.0253 14 8 6.0416 5.5593 -4.1744 15 7 7.5099 4.1586 -5.0714 16 6 7.3779 4.7438 -6.3041 17 1 6.7039 5.5771 -6.4370 18 6 8.1115 4.2648 -7.3827 19 7 8.9313 3.2506 -7.2212 20 14 7.9323 5.0627 -9.0621 21 1 8.3174 6.4943 -8.9737 22 1 8.8163 4.3721 -10.0351 23 1 6.5213 4.9567 -9.5126 24 6 7.3739 4.4544 0.4893 25 6 5.9741 4.9674 0.8364 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5874 2.1492 32 1 0.5491 2.1252 1.3969 33 1 1.9984 3.1543 1.3072 34 1 3.7328 3.4507 -0.0805 35 1 6.1126 2.1429 0.6159 36 1 5.9671 2.0580 -1.1561 37 1 6.2724 5.6504 -1.6722 38 1 7.9782 4.0570 -2.3399 39 1 6.6599 2.9285 -2.7353 40 1 8.1150 3.4099 -4.9521 41 1 9.4431 2.9160 -7.9741 42 1 7.8046 3.6904 1.1366 43 1 8.0817 5.1687 0.0689 44 1 5.7617 6.0191 0.6443 45 1 5.4838 4.5411 1.7115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670746708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:49 Heat of formation + Delta-G solvation = -64.256823 kcal Electronic energy + Delta-G solvation = -24016.765979 eV Core-core repulsion = 20455.348855 eV Total energy + Delta-G solvation = -3561.417125 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11319 -38.88169 -37.79220 -35.56203 -34.25450 -33.97029 -32.61906 -31.19277 -30.12772 -27.21227 -26.54333 -25.27663 -24.08415 -22.67095 -21.72599 -20.08903 -19.46011 -19.23503 -17.89937 -17.26037 -16.45735 -16.14259 -15.67165 -15.43853 -15.23366 -14.54394 -14.47250 -14.12091 -14.03971 -13.93224 -13.67576 -13.25722 -13.06088 -12.59766 -12.48971 -12.36450 -12.18792 -11.86286 -11.77391 -11.70563 -11.64458 -11.48358 -11.09149 -11.01143 -10.86561 -10.84008 -10.44772 -10.32642 -10.20798 -9.70363 -9.50823 -9.03248 -8.45354 -8.09808 -7.97043 -6.41994 -3.83134 2.66501 3.02870 3.19751 3.25693 3.29792 3.65509 3.88550 4.05145 4.24919 4.47648 4.52179 4.58830 4.66508 4.72816 4.83414 5.10521 5.11141 5.17293 5.24730 5.27904 5.33914 5.45534 5.51409 5.55630 5.61528 5.67610 5.71154 5.71473 5.75054 5.84519 5.89746 5.93907 5.99302 6.05027 6.17459 6.24887 6.42870 7.11202 7.50069 7.54429 7.55838 8.04822 8.24183 8.59995 9.16747 9.53098 10.04124 10.75586 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003140 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.766149 B = 8916.301386 C =10046.695405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.112 4.112 4 H 0.099 0.901 5 C -0.144 4.144 6 C 0.515 3.485 7 O -0.546 6.546 8 N -0.716 5.716 9 C 0.166 3.834 10 C 0.038 3.962 11 N -0.626 5.626 12 C 0.050 3.950 13 C 0.440 3.560 14 O -0.585 6.585 15 N -0.561 5.561 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.206 4.206 25 C -0.166 4.166 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.354 0.646 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 -2.523 18.829 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.133 4.133 4 H 0.117 0.883 5 C -0.202 4.202 6 C 0.302 3.698 7 O -0.423 6.423 8 N -0.367 5.367 9 C 0.042 3.958 10 C -0.055 4.055 11 N -0.257 5.257 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.470 6.470 15 N -0.198 5.198 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.247 4.247 25 C -0.204 4.204 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.299 -3.103 18.299 21.226 hybrid contribution 1.133 0.703 -0.576 1.453 sum -9.165 -2.400 17.722 20.096 Atomic orbital electron populations 1.21847 0.95569 1.01827 1.01869 1.21330 0.95250 0.94247 1.03473 1.21357 0.91946 0.99424 1.00616 0.88317 1.21819 1.02303 1.00202 0.95835 1.20672 0.89965 0.83498 0.75708 1.90694 1.70378 1.31516 1.49706 1.45886 1.07478 1.08892 1.74494 1.20697 0.80148 0.92727 1.02204 1.21875 1.01489 0.94638 0.87532 1.59861 1.55732 1.07464 1.02651 1.21683 0.94896 0.99432 0.92196 1.19749 0.85030 0.87095 0.85541 1.90518 1.40816 1.30940 1.84685 1.41849 1.38488 1.31451 1.08000 1.19652 1.23884 1.14930 0.84602 0.87967 1.25272 0.96061 0.96448 1.00097 1.69603 1.26674 1.24993 1.32904 0.85914 0.78319 0.79023 0.80938 1.19916 1.20948 1.19849 1.23645 0.91828 1.04390 1.04840 1.23148 0.99477 0.99823 0.97954 0.92530 0.92601 0.92544 0.91046 0.91467 0.92208 0.91239 0.92139 0.76096 0.91237 0.90406 0.82574 0.93466 0.89463 0.77415 0.91763 0.88431 0.88406 0.88182 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -1.01 4.75 -26.73 -0.13 -1.14 16 3 C -0.11 -1.06 2.73 -91.77 -0.25 -1.31 16 4 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.14 -1.01 8.84 37.16 0.33 -0.68 16 6 C 0.52 6.57 7.15 -10.98 -0.08 6.49 16 7 O -0.55 -9.08 15.92 5.56 0.09 -8.99 16 8 N -0.72 -8.20 5.41 -60.29 -0.33 -8.53 16 9 C 0.17 2.05 5.68 -4.04 -0.02 2.03 16 10 C 0.04 0.45 1.81 -131.60 -0.24 0.21 16 11 N -0.63 -9.65 6.29 -101.22 -0.64 -10.29 16 12 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 13 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 14 O -0.59 -15.77 15.79 5.55 0.09 -15.68 16 15 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 16 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 19 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 20 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.21 -2.08 10.07 -26.69 -0.27 -2.35 16 25 C -0.17 -1.53 9.89 -26.69 -0.26 -1.80 16 26 H 0.06 0.36 6.57 -51.93 -0.34 0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 33 H 0.06 0.37 7.56 -51.93 -0.39 -0.02 16 34 H 0.40 3.97 7.83 -40.82 -0.32 3.65 16 35 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.08 1.14 6.52 -51.93 -0.34 0.81 16 37 H 0.35 5.59 8.32 -39.29 -0.33 5.26 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.51 6.62 -51.93 -0.34 1.16 16 40 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.73 372.81 -7.73 -40.46 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -7.29 Total: 15.90 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.92 Total: 3.78 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.30 Total: -57.24 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.18 Total: -24.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.73 -7.73 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds