Wall clock time and date at job start Tue Mar 31 2020 03:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47573 * 2 1 4 4 H 1.08998 * 109.47205 * 305.00451 * 3 2 1 5 5 C 1.53005 * 109.47146 * 65.00244 * 3 2 1 6 6 C 1.50705 * 109.47270 * 185.00133 * 3 2 1 7 7 O 1.21277 * 119.99936 * 359.97438 * 6 3 2 8 8 N 1.34774 * 119.99573 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99623 * 179.97438 * 8 6 3 10 10 C 1.53001 * 109.47318 * 175.58674 * 9 8 6 11 11 N 1.46905 * 115.54932 * 279.62026 * 10 9 8 12 12 C 1.46893 * 110.99896 * 294.62287 * 11 10 9 13 13 C 1.50697 * 109.47183 * 179.59862 * 12 11 10 14 14 O 1.21290 * 120.00475 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99882 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99573 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00594 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99586 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99697 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46946 * 60.00179 * 20 18 16 22 22 H 1.48497 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47433 * 300.00154 * 20 18 16 24 24 C 1.52999 * 117.50151 * 133.94528 * 10 9 8 25 25 C 1.52999 * 117.49656 * 65.28380 * 10 9 8 26 26 H 1.09007 * 109.46942 * 299.99875 * 1 2 3 27 27 H 1.08997 * 109.46916 * 59.99764 * 1 2 3 28 28 H 1.08997 * 109.47461 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47082 * 240.00078 * 2 1 3 30 30 H 1.09000 * 109.47415 * 120.00173 * 2 1 3 31 31 H 1.08995 * 109.47073 * 59.99531 * 5 3 2 32 32 H 1.09002 * 109.46458 * 300.00059 * 5 3 2 33 33 H 1.08997 * 109.47290 * 180.02562 * 5 3 2 34 34 H 0.96993 * 120.00671 * 359.97438 * 8 6 3 35 35 H 1.08994 * 109.47460 * 295.59010 * 9 8 6 36 36 H 1.09006 * 109.46688 * 55.58897 * 9 8 6 37 37 H 1.00907 * 110.99595 * 170.67266 * 11 10 9 38 38 H 1.09000 * 109.47516 * 299.59890 * 12 11 10 39 39 H 1.08997 * 109.47125 * 59.59742 * 12 11 10 40 40 H 0.97000 * 119.99932 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00009 * 179.97438 * 19 18 16 42 42 H 1.09004 * 117.49357 * 359.97438 * 24 10 9 43 43 H 1.08995 * 117.49691 * 145.02327 * 24 10 9 44 44 H 1.08998 * 117.50114 * 214.97924 * 25 10 9 45 45 H 1.08995 * 117.49952 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6354 2.1265 1.3074 6 6 3.5420 1.4441 -0.1239 7 8 4.1451 0.3950 -0.2038 8 7 4.2150 2.6116 -0.1448 9 6 5.6751 2.6133 -0.2647 10 6 6.1762 4.0547 -0.3748 11 7 6.0685 4.6628 -1.7078 12 6 6.9425 3.9792 -2.6704 13 6 6.7979 4.6229 -4.0253 14 8 6.0416 5.5593 -4.1744 15 7 7.5099 4.1586 -5.0714 16 6 7.3779 4.7438 -6.3041 17 1 6.7039 5.5771 -6.4370 18 6 8.1115 4.2648 -7.3827 19 7 8.9313 3.2506 -7.2212 20 14 7.9323 5.0627 -9.0621 21 1 8.3174 6.4943 -8.9737 22 1 8.8163 4.3721 -10.0351 23 1 6.5213 4.9567 -9.5126 24 6 7.3739 4.4544 0.4893 25 6 5.9741 4.9674 0.8364 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0699 1.5874 2.1492 32 1 0.5491 2.1252 1.3969 33 1 1.9984 3.1543 1.3072 34 1 3.7328 3.4507 -0.0805 35 1 6.1126 2.1429 0.6159 36 1 5.9671 2.0580 -1.1561 37 1 6.2724 5.6504 -1.6722 38 1 7.9782 4.0570 -2.3399 39 1 6.6599 2.9285 -2.7353 40 1 8.1150 3.4099 -4.9521 41 1 9.4431 2.9160 -7.9741 42 1 7.8046 3.6904 1.1366 43 1 8.0817 5.1687 0.0689 44 1 5.7617 6.0191 0.6443 45 1 5.4838 4.5411 1.7115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670746708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:48 Heat of formation + Delta-G solvation = -89.086770 kcal Electronic energy + Delta-G solvation = -24017.842686 eV Core-core repulsion = 20455.348855 eV Total energy + Delta-G solvation = -3562.493832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.11736 -40.30502 -39.25633 -36.35771 -36.04333 -35.22857 -33.94280 -33.22077 -30.81423 -28.32679 -28.01455 -25.97848 -25.88982 -23.48417 -22.54438 -21.20264 -20.98271 -20.35574 -19.93093 -18.28649 -17.79854 -17.17757 -17.01856 -16.53250 -16.42440 -16.28552 -15.83155 -15.55307 -15.28531 -14.91285 -14.67946 -14.37225 -14.16582 -13.89027 -13.67232 -13.52800 -13.35741 -12.97516 -12.94563 -12.87155 -12.54270 -12.47444 -12.45629 -12.40886 -12.14001 -11.89399 -11.68339 -11.58136 -11.52033 -11.22372 -10.72545 -10.35140 -10.05210 -10.04408 -9.28970 -8.48652 -5.98132 1.38420 1.40340 1.51684 1.67203 2.01081 2.12920 2.26807 2.65325 3.02662 3.18368 3.41239 3.59871 3.70875 3.78824 3.89293 4.01294 4.01954 4.24805 4.40642 4.42106 4.49325 4.54965 4.58302 4.61951 4.67797 4.75165 4.75695 4.80934 4.98767 5.00472 5.06041 5.12510 5.20698 5.22369 5.38004 5.38292 5.46074 5.52006 5.83085 6.03777 6.32623 6.56180 6.60422 7.09189 7.28278 7.52261 8.06639 8.68623 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.003140 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.766149 B = 8916.301386 C =10046.695405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.108 4.108 4 H 0.107 0.893 5 C -0.139 4.139 6 C 0.508 3.492 7 O -0.592 6.592 8 N -0.707 5.707 9 C 0.169 3.831 10 C 0.020 3.980 11 N -0.636 5.636 12 C 0.067 3.933 13 C 0.439 3.561 14 O -0.620 6.620 15 N -0.573 5.573 16 C -0.336 4.336 17 H 0.081 0.919 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.994 3.006 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.199 4.199 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.351 0.649 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.395 0.605 41 H 0.278 0.722 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -1.732 20.184 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.125 0.875 5 C -0.196 4.196 6 C 0.296 3.704 7 O -0.473 6.473 8 N -0.358 5.358 9 C 0.044 3.956 10 C -0.072 4.072 11 N -0.267 5.267 12 C -0.065 4.065 13 C 0.226 3.774 14 O -0.507 6.507 15 N -0.210 5.210 16 C -0.465 4.465 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.239 4.239 25 C -0.179 4.179 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.172 0.828 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.229 0.771 41 H 0.088 0.912 42 H 0.130 0.870 43 H 0.113 0.887 44 H 0.124 0.876 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.981 -2.298 19.685 22.657 hybrid contribution 1.347 0.453 -0.934 1.700 sum -9.634 -1.845 18.751 21.162 Atomic orbital electron populations 1.21814 0.93505 1.02410 1.02812 1.21310 0.96975 0.94193 1.01822 1.21404 0.89365 0.99653 1.02501 0.87505 1.21817 1.03485 1.00405 0.93886 1.21339 0.91382 0.83006 0.74652 1.90669 1.71554 1.33118 1.51912 1.45867 1.07300 1.09083 1.73555 1.20618 0.80715 0.92935 1.01301 1.21790 1.04170 0.94707 0.86544 1.59804 1.55348 1.07242 1.04302 1.21453 0.96642 0.98986 0.89407 1.20758 0.83300 0.86227 0.87086 1.90482 1.41975 1.32521 1.85702 1.41941 1.39211 1.31747 1.08074 1.19656 1.24931 1.15539 0.86394 0.90106 1.26087 0.95240 0.96737 1.03262 1.69673 1.26831 1.25571 1.34120 0.84969 0.78418 0.78297 0.76548 1.19443 1.19514 1.19681 1.23687 0.91885 1.04438 1.03909 1.23259 0.98512 0.99574 0.96589 0.90823 0.92320 0.92243 0.93660 0.92268 0.92521 0.89417 0.90895 0.74935 0.90192 0.93306 0.82850 0.91491 0.89088 0.77121 0.91248 0.87038 0.88703 0.87630 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.27 16 2 C -0.10 -2.00 4.75 30.59 0.15 -1.86 16 3 C -0.11 -1.93 2.73 -11.54 -0.03 -1.96 16 4 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.14 -1.60 8.84 71.98 0.64 -0.96 16 6 C 0.51 12.87 7.15 87.66 0.63 13.50 16 7 O -0.59 -20.26 15.92 -3.02 -0.05 -20.31 16 8 N -0.71 -15.49 5.41 -463.05 -2.50 -17.99 16 9 C 0.17 4.03 5.68 86.38 0.49 4.52 16 10 C 0.02 0.44 1.81 3.53 0.01 0.45 16 11 N -0.64 -19.12 6.29 -474.16 -2.98 -22.10 16 12 C 0.07 2.37 6.01 85.56 0.51 2.88 16 13 C 0.44 21.12 7.82 87.65 0.69 21.81 16 14 O -0.62 -34.17 15.79 -3.06 -0.05 -34.22 16 15 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 16 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 17 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 19 N -0.92 -50.64 13.05 21.67 0.28 -50.36 16 20 Si 0.99 43.30 29.55 68.60 2.03 45.32 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 C -0.20 -3.49 10.07 30.62 0.31 -3.18 16 25 C -0.14 -2.18 9.89 30.62 0.30 -1.87 16 26 H 0.07 0.73 6.57 -2.38 -0.02 0.72 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 1.08 7.96 -2.39 -0.02 1.06 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.72 6.56 -2.39 -0.02 0.71 16 33 H 0.07 0.67 7.56 -2.39 -0.02 0.65 16 34 H 0.41 7.35 7.83 -92.71 -0.73 6.63 16 35 H 0.08 1.75 7.94 -2.39 -0.02 1.73 16 36 H 0.05 1.46 6.52 -2.38 -0.02 1.44 16 37 H 0.35 10.83 8.32 -89.69 -0.75 10.08 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 3.17 6.62 -2.39 -0.02 3.16 16 40 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 41 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.11 1.68 8.08 -2.38 -0.02 1.66 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.49 372.81 -0.42 -72.91 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -1.19 Total: 45.11 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 5.66 Total: 13.29 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -6.83 Total: -122.10 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.10 Total: -54.53 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -72.49 -0.42 -72.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.178 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds