Wall clock time and date at job start Tue Mar 31 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47453 * 2 1 4 4 C 1.50702 * 109.46826 * 119.99665 * 2 1 3 5 5 N 1.34771 * 120.00087 * 299.72237 * 4 2 1 6 6 O 1.21285 * 119.99783 * 120.00445 * 4 2 1 7 7 C 1.50691 * 109.47372 * 239.99511 * 2 1 3 8 8 O 1.21283 * 119.99995 * 3.15558 * 7 2 1 9 9 N 1.34777 * 120.00517 * 183.14630 * 7 2 1 10 10 C 1.46925 * 120.62827 * 356.19596 * 9 7 2 11 11 C 1.53197 * 108.77801 * 126.36502 * 10 9 7 12 12 C 1.53036 * 109.31347 * 54.63526 * 11 10 9 13 13 C 1.53041 * 109.53566 * 298.64040 * 12 11 10 14 14 H 1.08998 * 109.49608 * 301.40578 * 13 12 11 15 15 C 1.53002 * 109.49505 * 181.35063 * 13 12 11 16 16 N 1.46499 * 109.47402 * 64.99656 * 15 13 12 17 17 C 1.36937 * 119.99893 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99969 * 179.97438 * 17 16 15 20 20 N 1.31614 * 120.00025 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47285 * 90.00277 * 21 19 17 23 23 H 1.48502 * 109.47008 * 210.00303 * 21 19 17 24 24 H 1.48501 * 109.46861 * 330.00153 * 21 19 17 25 25 C 1.46924 * 120.63679 * 175.91336 * 9 7 2 26 26 H 1.09002 * 109.47456 * 295.07134 * 1 2 3 27 27 H 1.09007 * 109.47147 * 55.07061 * 1 2 3 28 28 H 1.09000 * 109.47489 * 175.07013 * 1 2 3 29 29 H 1.09001 * 109.47414 * 185.63969 * 3 2 1 30 30 H 1.09006 * 109.46697 * 305.64200 * 3 2 1 31 31 H 1.09001 * 109.47237 * 65.63074 * 3 2 1 32 32 H 0.97000 * 120.00039 * 180.27672 * 5 4 2 33 33 H 0.97002 * 119.99897 * 0.27880 * 5 4 2 34 34 H 1.08997 * 109.58830 * 246.15001 * 10 9 7 35 35 H 1.09002 * 109.58983 * 6.43339 * 10 9 7 36 36 H 1.08998 * 109.49829 * 174.58858 * 11 10 9 37 37 H 1.09001 * 109.49265 * 294.68140 * 11 10 9 38 38 H 1.09004 * 109.46052 * 58.65430 * 12 11 10 39 39 H 1.08994 * 109.46351 * 178.63335 * 12 11 10 40 40 H 1.09003 * 109.46924 * 184.99920 * 15 13 12 41 41 H 1.08997 * 109.47163 * 304.99316 * 15 13 12 42 42 H 0.97001 * 120.00166 * 359.97438 * 16 15 13 43 43 H 0.97002 * 120.00288 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58216 * 353.41657 * 25 9 7 45 45 H 1.08994 * 109.58932 * 113.84441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7112 -0.2466 2.4546 6 8 2.7295 -1.6964 1.1193 7 6 2.0323 -0.7105 -1.2303 8 8 1.2457 -1.1211 -2.0571 9 7 3.3557 -0.8894 -1.4121 10 6 4.3247 -0.3254 -0.4626 11 6 5.2493 -1.4464 0.0227 12 6 5.8835 -2.1383 -1.1860 13 6 4.7866 -2.7587 -2.0544 14 1 4.2135 -3.4719 -1.4620 15 6 5.4237 -3.4789 -3.2445 16 7 6.2210 -4.6091 -2.7616 17 6 6.8896 -5.4055 -3.6526 18 1 6.8295 -5.2003 -4.7112 19 6 7.6456 -6.4761 -3.1950 20 7 7.7193 -6.7259 -1.9049 21 14 8.5582 -7.5622 -4.4103 22 1 9.9210 -7.0169 -4.6350 23 1 8.6599 -8.9393 -3.8641 24 1 7.8191 -7.5937 -5.6979 25 6 3.8566 -1.6574 -2.5601 26 1 -0.3634 0.4355 0.9308 27 1 -0.3634 0.5884 -0.8426 28 1 -0.3634 -1.0238 -0.0883 29 1 3.1253 1.4441 -0.1010 30 1 1.5965 1.9846 -0.8352 31 1 1.7614 1.9264 0.9361 32 1 2.0378 -0.7015 3.2466 33 1 1.1535 0.5421 2.5435 34 1 4.9145 0.4461 -0.9573 35 1 3.7952 0.1075 0.3862 36 1 6.0324 -1.0249 0.6529 37 1 4.6717 -2.1719 0.5956 38 1 6.4405 -1.4072 -1.7720 39 1 6.5606 -2.9205 -0.8428 40 1 4.6411 -3.8441 -3.9095 41 1 6.0669 -2.7858 -3.7867 42 1 6.2760 -4.7928 -1.8108 43 1 8.2472 -7.4742 -1.5852 44 1 3.0184 -2.1054 -3.0937 45 1 4.4074 -0.9966 -3.2295 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690409727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:08 Heat of formation + Delta-G solvation = -59.040485 kcal Electronic energy + Delta-G solvation = -25698.701104 eV Core-core repulsion = 22137.510177 eV Total energy + Delta-G solvation = -3561.190927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40122 -38.99138 -37.66401 -35.15775 -34.88288 -33.48312 -32.48731 -31.52926 -29.85647 -27.78011 -25.92714 -25.40968 -24.09758 -22.72568 -22.07206 -21.05214 -19.55298 -19.13150 -18.04664 -17.05462 -17.00209 -16.40520 -15.74394 -15.24811 -14.99794 -14.79008 -14.33528 -14.20302 -13.85856 -13.70292 -13.49374 -13.02532 -12.92754 -12.82726 -12.62141 -12.57197 -12.38613 -12.15766 -11.96211 -11.76710 -11.39810 -10.82700 -10.78152 -10.69684 -10.45738 -10.21051 -10.11180 -10.08205 -9.93025 -9.86510 -9.68757 -9.54404 -8.79093 -8.43262 -6.82203 -5.68149 -2.96107 2.26114 2.46825 3.01342 3.26135 3.49096 3.53918 3.56064 4.09592 4.37108 4.45522 4.62239 4.66795 4.90203 5.03996 5.13541 5.18913 5.25266 5.32962 5.37369 5.38418 5.48011 5.60905 5.65742 5.67449 5.76348 5.86223 5.99351 6.09526 6.17782 6.23699 6.31114 6.36352 6.50555 6.67132 6.73108 6.82099 6.91421 6.93925 7.05202 7.49304 7.77859 7.95218 8.17935 8.50926 9.61861 10.21290 10.56317 11.54923 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029048 B = 0.003437 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.693976 B = 8145.585446 C = 8445.181289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.154 4.154 4 C 0.523 3.477 5 N -0.852 5.852 6 O -0.510 6.510 7 C 0.539 3.461 8 O -0.539 6.539 9 N -0.588 5.588 10 C 0.110 3.890 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.105 4.105 14 H 0.075 0.925 15 C 0.160 3.840 16 N -0.730 5.730 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.121 3.879 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 21.985 10.264 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.112 4.112 3 C -0.212 4.212 4 C 0.306 3.694 5 N -0.417 5.417 6 O -0.384 6.384 7 C 0.325 3.675 8 O -0.416 6.416 9 N -0.319 5.319 10 C -0.013 4.013 11 C -0.174 4.174 12 C -0.146 4.146 13 C -0.125 4.125 14 H 0.094 0.906 15 C 0.032 3.968 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.001 4.001 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.228 0.772 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.343 21.057 9.376 26.634 hybrid contribution 0.494 -0.488 0.214 0.726 sum -12.849 20.569 9.590 26.080 Atomic orbital electron populations 1.21659 0.89845 1.04177 1.02609 1.21100 0.99633 0.97690 0.92797 1.22211 1.03138 0.92000 1.03824 1.20102 0.79851 0.84696 0.84733 1.43791 1.56181 1.33907 1.07847 1.90872 1.35860 1.25273 1.86379 1.19634 0.82258 0.79294 0.86329 1.90692 1.54920 1.50861 1.45142 1.47845 1.05028 1.52554 1.26449 1.21971 0.91114 0.96135 0.92057 1.22011 0.98251 0.98497 0.98674 1.21500 0.97560 0.99979 0.95565 1.21561 0.96194 0.96502 0.98207 0.90625 1.20589 0.93296 0.89724 0.93187 1.42356 1.57135 1.31042 1.06930 1.19250 1.21646 1.06152 0.89731 0.91224 1.24729 1.01199 0.99268 0.95927 1.69666 1.45218 1.31628 1.11793 0.86188 0.79792 0.80038 0.80188 1.21814 1.21836 1.20792 1.21551 0.98370 0.93185 0.86996 0.91749 0.90508 0.91073 0.90227 0.90452 0.90983 0.76356 0.77160 0.92014 0.90352 0.91839 0.89246 0.92544 0.90457 0.96286 0.96285 0.78167 0.93608 0.89144 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 7.74 37.15 0.29 -0.74 16 2 C -0.11 -1.02 0.60 -156.82 -0.09 -1.12 16 3 C -0.15 -0.97 8.08 37.16 0.30 -0.67 16 4 C 0.52 5.30 5.08 -10.99 -0.06 5.24 16 5 N -0.85 -4.64 8.59 31.22 0.27 -4.38 16 6 O -0.51 -7.49 12.55 5.55 0.07 -7.42 16 7 C 0.54 7.82 6.03 -10.99 -0.07 7.76 16 8 O -0.54 -9.58 15.38 5.55 0.09 -9.49 16 9 N -0.59 -8.44 2.69 -173.04 -0.47 -8.90 16 10 C 0.11 1.32 3.88 -3.71 -0.01 1.31 16 11 C -0.14 -1.95 5.78 -26.61 -0.15 -2.10 16 12 C -0.11 -1.83 5.06 -26.69 -0.13 -1.96 16 13 C -0.11 -1.93 2.36 -90.72 -0.21 -2.14 16 14 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.46 5.66 -4.04 -0.02 3.44 16 16 N -0.73 -19.49 5.32 -59.91 -0.32 -19.81 16 17 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 21 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.12 1.94 5.68 -3.93 -0.02 1.92 16 26 H 0.06 0.31 7.44 -51.93 -0.39 -0.08 16 27 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 29 H 0.08 0.54 4.93 -51.93 -0.26 0.28 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.24 7.40 -51.93 -0.38 -0.14 16 32 H 0.40 1.94 8.93 -40.82 -0.36 1.58 16 33 H 0.40 0.93 7.54 -40.82 -0.31 0.62 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.80 3.15 -51.93 -0.16 0.64 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.49 5.93 -51.93 -0.31 1.19 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.52 7.15 -51.93 -0.37 1.15 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 10.78 6.85 -40.82 -0.28 10.50 16 43 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.09 1.57 7.03 -51.93 -0.36 1.21 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -36.52 343.68 -6.87 -43.39 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.95 Total: 8.49 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.44 Total: 3.30 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.21 Total: -61.57 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.16 Total: -16.92 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.52 -6.87 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690409727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.651 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds