Wall clock time and date at job start Tue Mar 31 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47586 * 2 1 4 4 C 1.50699 * 115.54695 * 294.74411 * 3 2 1 5 5 O 1.21287 * 120.00097 * 123.22928 * 4 3 2 6 6 N 1.34774 * 120.00415 * 303.22685 * 4 3 2 7 7 C 1.46499 * 120.00223 * 175.01583 * 6 4 3 8 8 C 1.53005 * 109.47096 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.46978 * 295.00609 * 8 7 6 10 10 C 1.52995 * 109.47201 * 175.00229 * 8 7 6 11 11 N 1.46902 * 109.46691 * 55.00046 * 8 7 6 12 12 C 1.46901 * 110.99768 * 204.99671 * 11 8 7 13 13 C 1.50703 * 109.47170 * 179.97438 * 12 11 8 14 14 O 1.21286 * 119.99834 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99774 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99851 * 180.02562 * 15 13 12 17 17 H 1.08006 * 119.99838 * 359.97438 * 16 15 13 18 18 C 1.38950 * 120.00291 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99619 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00082 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46930 * 60.00043 * 20 18 16 22 22 H 1.48498 * 109.46818 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46680 * 299.99915 * 20 18 16 24 24 C 1.52995 * 117.49957 * 80.41316 * 3 2 1 25 25 C 1.52998 * 117.50255 * 149.07591 * 3 2 1 26 26 H 1.09004 * 109.47027 * 295.85366 * 1 2 3 27 27 H 1.09004 * 109.46648 * 55.85008 * 1 2 3 28 28 H 1.08996 * 109.47578 * 175.84726 * 1 2 3 29 29 H 1.09004 * 109.46905 * 239.99579 * 2 1 3 30 30 H 1.09004 * 109.46618 * 119.99747 * 2 1 3 31 31 H 0.96997 * 119.99647 * 355.01642 * 6 4 3 32 32 H 1.09004 * 109.46966 * 60.00008 * 7 6 4 33 33 H 1.08991 * 109.47243 * 299.99765 * 7 6 4 34 34 H 1.09005 * 109.46835 * 299.99832 * 10 8 7 35 35 H 1.08994 * 109.47224 * 180.02562 * 10 8 7 36 36 H 1.08994 * 109.47632 * 59.99759 * 10 8 7 37 37 H 1.00896 * 111.00102 * 328.95104 * 11 8 7 38 38 H 1.08994 * 109.47544 * 300.00443 * 12 11 8 39 39 H 1.09008 * 109.46861 * 60.00576 * 12 11 8 40 40 H 0.97002 * 120.00403 * 0.02562 * 15 13 12 41 41 H 0.97000 * 119.99801 * 179.97438 * 19 18 16 42 42 H 1.09000 * 117.50001 * 215.00771 * 24 3 2 43 43 H 1.09003 * 117.50064 * 0.02562 * 24 3 2 44 44 H 1.09004 * 117.49747 * 359.97304 * 25 3 2 45 45 H 1.08992 * 117.50457 * 144.97225 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7203 2.2449 -1.2348 5 8 1.1103 3.2888 -1.1386 6 7 2.1119 1.8026 -2.4462 7 6 1.7078 2.5243 -3.6553 8 6 2.2815 1.8190 -4.8860 9 1 3.3696 1.8786 -4.8646 10 6 1.7583 2.4980 -6.1532 11 7 1.8682 0.4093 -4.8794 12 6 2.8137 -0.4200 -5.6385 13 6 2.3581 -1.8563 -5.6090 14 8 1.3452 -2.1591 -5.0145 15 7 3.0763 -2.8041 -6.2431 16 6 2.6616 -4.1107 -6.2167 17 1 1.7596 -4.3803 -5.6874 18 6 3.4023 -5.0881 -6.8701 19 7 4.5000 -4.7600 -7.5137 20 14 2.8376 -6.8683 -6.8334 21 1 1.4882 -6.9722 -7.4447 22 1 3.7944 -7.7069 -7.5992 23 1 2.7816 -7.3409 -5.4268 24 6 2.0626 2.1838 1.3381 25 6 3.3732 1.7204 0.6974 26 1 -0.3633 0.4482 0.9248 27 1 -0.3633 0.5769 -0.8505 28 1 -0.3634 -1.0249 -0.0744 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.6614 1.0065 -2.5174 32 1 2.0867 3.5455 -3.6127 33 1 0.6200 2.5428 -3.7209 34 1 0.6701 2.4383 -6.1745 35 1 2.1666 1.9953 -7.0298 36 1 2.0649 3.5439 -6.1580 37 1 1.7640 0.0674 -3.9359 38 1 2.8544 -0.0725 -6.6708 39 1 3.8044 -0.3443 -5.1903 40 1 3.8866 -2.5620 -6.7183 41 1 5.0173 -5.4423 -7.9695 42 1 1.8459 3.2520 1.3254 43 1 1.7143 1.6438 2.2186 44 1 3.8867 0.8756 1.1567 45 1 4.0191 2.4833 0.2630 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690619277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:43 Heat of formation + Delta-G solvation = -82.647011 kcal Electronic energy + Delta-G solvation = -24330.931713 eV Core-core repulsion = 20768.717130 eV Total energy + Delta-G solvation = -3562.214583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.35081 -40.20018 -38.60034 -37.65513 -35.96973 -34.98403 -33.26888 -32.84462 -32.03665 -28.20926 -27.77466 -25.82735 -25.07980 -23.65344 -23.14233 -21.68112 -21.14867 -20.44556 -19.88684 -18.19535 -17.63727 -17.23966 -16.92895 -16.82828 -16.41740 -16.14473 -15.82895 -15.64247 -15.15282 -14.89797 -14.80384 -14.34853 -14.15614 -13.72951 -13.56642 -13.46808 -13.37654 -13.27620 -12.94259 -12.81883 -12.65531 -12.58964 -12.41601 -12.40354 -12.14492 -12.11974 -11.90576 -11.48892 -11.38494 -11.00249 -10.81528 -10.33245 -10.19705 -10.00268 -9.38331 -8.45637 -5.94069 1.40470 1.42884 1.46577 1.53268 2.05146 2.07575 2.29660 2.73410 2.86859 3.22028 3.47846 3.56677 3.65199 3.74386 3.84703 3.98016 4.14843 4.25050 4.36101 4.38382 4.45391 4.51869 4.58112 4.59297 4.61117 4.72419 4.78382 4.91807 4.95191 4.98167 5.03180 5.05494 5.14177 5.20027 5.27749 5.31896 5.41942 5.44121 5.87977 6.09047 6.33833 6.37879 6.61313 7.11509 7.13923 7.57719 8.13006 8.71411 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.003377 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.599545 B = 8289.812254 C = 9420.645699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.175 4.175 4 C 0.551 3.449 5 O -0.579 6.579 6 N -0.720 5.720 7 C 0.122 3.878 8 C 0.079 3.921 9 H 0.069 0.931 10 C -0.137 4.137 11 N -0.679 5.679 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.622 6.622 15 N -0.572 5.572 16 C -0.334 4.334 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.064 0.936 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.343 0.657 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.397 0.603 41 H 0.277 0.723 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 13.377 11.803 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.178 4.178 4 C 0.339 3.661 5 O -0.459 6.459 6 N -0.371 5.371 7 C -0.001 4.001 8 C -0.030 4.030 9 H 0.087 0.913 10 C -0.195 4.195 11 N -0.315 5.315 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.209 5.209 16 C -0.463 4.463 17 H 0.097 0.903 18 C -0.211 4.211 19 N -0.561 5.561 20 Si 0.814 3.186 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.180 4.180 25 C -0.177 4.177 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.242 0.758 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.725 13.877 11.594 18.098 hybrid contribution 0.894 -1.188 -0.085 1.489 sum 1.620 12.690 11.509 17.208 Atomic orbital electron populations 1.21711 0.95861 1.01720 1.01392 1.21044 0.95735 0.91028 1.03726 1.21528 1.06324 0.97566 0.92383 1.19946 0.77309 0.84384 0.84490 1.90659 1.42574 1.25471 1.87195 1.45967 1.54093 1.31294 1.05794 1.21565 1.00021 0.96155 0.82392 1.21848 0.98788 0.87176 0.95229 0.91328 1.21745 1.01618 1.00411 0.95735 1.60123 1.49544 1.01514 1.20277 1.21621 0.94537 0.89245 1.01429 1.20857 0.85384 0.88341 0.82947 1.90502 1.28193 1.83390 1.48771 1.41911 1.24871 1.06737 1.47362 1.19621 1.09701 0.84186 1.32828 0.90340 1.25996 0.95543 1.03970 0.95579 1.69661 1.15836 1.36389 1.34174 0.85030 0.78045 0.76931 0.78605 1.19906 1.19567 1.19571 1.23047 1.00453 1.00589 0.93956 1.23213 0.89249 1.04099 1.01157 0.91733 0.95119 0.91984 0.91706 0.88615 0.75792 0.89814 0.92188 0.92816 0.92130 0.90058 0.83688 0.87729 0.91014 0.76960 0.91313 0.89266 0.86079 0.85531 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.83 71.98 0.71 -2.53 16 2 C -0.08 -1.47 5.79 30.59 0.18 -1.29 16 3 C -0.17 -3.43 1.91 -52.93 -0.10 -3.53 16 4 C 0.55 14.08 6.46 87.66 0.57 14.64 16 5 O -0.58 -18.97 16.51 -3.05 -0.05 -19.02 16 6 N -0.72 -16.18 4.97 -463.06 -2.30 -18.48 16 7 C 0.12 2.73 5.32 86.38 0.46 3.19 16 8 C 0.08 1.69 2.81 44.91 0.13 1.82 16 9 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 10 C -0.14 -2.70 9.41 71.98 0.68 -2.03 16 11 N -0.68 -19.96 5.93 -495.56 -2.94 -22.90 16 12 C 0.06 2.02 5.97 85.56 0.51 2.54 16 13 C 0.44 19.95 7.82 87.66 0.69 20.64 16 14 O -0.62 -33.46 15.78 -3.05 -0.05 -33.50 16 15 N -0.57 -28.36 5.29 -306.98 -1.62 -29.98 16 16 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 17 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 20 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 C -0.14 -2.41 9.76 30.62 0.30 -2.11 16 25 C -0.14 -2.03 9.93 30.62 0.30 -1.73 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.03 0.79 7.59 -2.39 -0.02 0.78 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.33 7.98 -2.38 -0.02 1.31 16 30 H 0.10 1.39 8.09 -2.38 -0.02 1.37 16 31 H 0.41 8.23 7.21 -92.71 -0.67 7.56 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.06 1.23 7.45 -2.39 -0.02 1.21 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.34 10.59 6.41 -89.70 -0.58 10.02 16 38 H 0.10 3.02 7.43 -2.39 -0.02 3.00 16 39 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 40 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 41 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 42 H 0.09 1.78 7.85 -2.39 -0.02 1.76 16 43 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -70.01 375.09 0.07 -69.93 By element: Atomic # 1 Polarization: 47.31 SS G_CDS: -0.97 Total: 46.35 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.69 Total: 11.76 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -6.58 Total: -119.71 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.10 Total: -52.52 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -70.01 0.07 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690619277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.716 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds