Wall clock time and date at job start Tue Mar 31 2020 03:07:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86795 * 120.00045 * 2 1
4 4 H 1.48498 * 109.47056 * 5.51263 * 3 2 1
5 5 H 1.48507 * 109.47213 * 245.50875 * 3 2 1
6 6 H 1.48500 * 109.47281 * 125.51178 * 3 2 1
7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99730 * 3.80470 * 7 2 1
9 9 N 1.36939 * 119.99958 * 183.80020 * 7 2 1
10 10 C 1.47426 * 125.64732 * 326.92286 * 9 7 2
11 11 C 1.54905 * 104.83145 * 204.09408 * 10 9 7
12 12 C 1.55160 * 101.58194 * 322.98985 * 11 10 9
13 13 C 1.47019 * 125.64650 * 146.61829 * 9 7 2
14 14 H 1.08998 * 109.88376 * 59.56153 * 13 9 7
15 15 C 1.52996 * 109.88107 * 298.38836 * 13 9 7
16 16 N 1.46507 * 109.47024 * 59.10573 * 15 13 9
17 17 C 1.34766 * 119.99992 * 186.55633 * 16 15 13
18 18 O 1.21276 * 120.00472 * 359.97438 * 17 16 15
19 19 C 1.50705 * 120.00041 * 179.97438 * 17 16 15
20 20 C 1.52994 * 109.47601 * 179.97438 * 19 17 16
21 21 C 1.52997 * 109.47692 * 179.97438 * 20 19 17
22 22 C 1.52996 * 109.47332 * 180.02562 * 21 20 19
23 23 C 1.50700 * 109.46942 * 180.02562 * 22 21 20
24 24 N 1.34780 * 120.00077 * 179.97438 * 23 22 21
25 25 O 1.21281 * 120.00119 * 359.97438 * 23 22 21
26 26 H 0.97000 * 119.99963 * 185.05522 * 1 2 3
27 27 H 1.09005 * 110.36951 * 322.92952 * 10 9 7
28 28 H 1.09000 * 110.36808 * 85.25360 * 10 9 7
29 29 H 1.09000 * 111.00995 * 81.06335 * 11 10 9
30 30 H 1.09006 * 111.00674 * 204.91797 * 11 10 9
31 31 H 1.08996 * 110.71979 * 153.86613 * 12 11 10
32 32 H 1.08998 * 110.72100 * 276.96100 * 12 11 10
33 33 H 1.08997 * 109.47247 * 179.09974 * 15 13 9
34 34 H 1.09000 * 109.47726 * 299.10565 * 15 13 9
35 35 H 0.97000 * 119.99861 * 6.55448 * 16 15 13
36 36 H 1.09002 * 109.47020 * 299.99981 * 19 17 16
37 37 H 1.09007 * 109.46754 * 59.99772 * 19 17 16
38 38 H 1.09002 * 109.47119 * 300.00167 * 20 19 17
39 39 H 1.08997 * 109.46947 * 59.99667 * 20 19 17
40 40 H 1.09002 * 109.47052 * 300.00303 * 21 20 19
41 41 H 1.09007 * 109.46632 * 60.00039 * 21 20 19
42 42 H 1.08999 * 109.47203 * 299.99575 * 22 21 20
43 43 H 1.08997 * 109.47203 * 59.99825 * 22 21 20
44 44 H 0.97000 * 119.99812 * 0.02562 * 24 23 22
45 45 H 0.96999 * 120.00467 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 1.2908 2.7432 0.1345
5 1 3.0004 1.7562 -1.2742
6 1 3.2020 1.6398 1.1396
7 6 2.0103 -1.2022 0.0005
8 1 1.4720 -2.1364 -0.0611
9 7 3.3774 -1.2035 0.0791
10 6 4.2718 -0.1796 -0.4911
11 6 5.6267 -0.9033 -0.6908
12 6 5.6744 -1.8248 0.5566
13 6 4.1960 -2.2228 0.7516
14 1 4.0146 -3.1994 0.3026
15 6 3.8571 -2.2614 2.2431
16 7 2.4349 -2.5692 2.4129
17 6 1.8777 -2.5255 3.6392
18 8 2.5537 -2.2319 4.6024
19 6 0.4146 -2.8415 3.8139
20 6 0.0394 -2.7205 5.2922
21 6 -1.4461 -3.0406 5.4694
22 6 -1.8213 -2.9189 6.9476
23 6 -3.2844 -3.2349 7.1222
24 7 -3.8415 -3.1918 8.3487
25 8 -3.9606 -3.5280 6.1590
26 1 -0.4850 -0.8368 0.0740
27 1 3.8849 0.1719 -1.4477
28 1 4.3853 0.6537 0.2023
29 1 5.6249 -1.4896 -1.6097
30 1 6.4538 -0.1933 -0.6838
31 1 6.2904 -2.7031 0.3639
32 1 6.0438 -1.2795 1.4251
33 1 4.4559 -3.0299 2.7320
34 1 4.0750 -1.2917 2.6905
35 1 1.8942 -2.8043 1.6426
36 1 -0.1809 -2.1403 3.2290
37 1 0.2190 -3.8578 3.4718
38 1 0.6349 -3.4218 5.8767
39 1 0.2351 -1.7044 5.6346
40 1 -2.0412 -2.3389 4.8849
41 1 -1.6421 -4.0567 5.1268
42 1 -1.2263 -3.6204 7.5324
43 1 -1.6253 -1.9028 7.2898
44 1 -3.3008 -2.9570 9.1190
45 1 -4.7834 -3.3948 8.4610
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001691102515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:23
Heat of formation + Delta-G solvation = -78.923014 kcal
Electronic energy + Delta-G solvation = -24386.534482 eV
Core-core repulsion = 20824.481383 eV
Total energy + Delta-G solvation = -3562.053098 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-39.65310 -39.16098 -37.87109 -35.03974 -33.84866 -33.76026 -32.80327 -30.80434
-29.87805 -29.21016 -25.86464 -24.45190 -23.25855 -21.50463 -20.97102 -20.40225
-19.69903 -19.12557 -17.63057 -17.43962 -16.77141 -16.18154 -16.08718 -15.70733
-15.16178 -15.02073 -14.92430 -13.99935 -13.95683 -13.48179 -13.32945 -13.22506
-12.94406 -12.38773 -12.32035 -12.24581 -11.72421 -11.46457 -11.35036 -11.16584
-11.03257 -10.99786 -10.95759 -10.61746 -10.50131 -10.43016 -10.09246 -9.90360
-9.87688 -9.39648 -9.25268 -9.14712 -8.69169 -8.20860 -7.05205 -6.30172
-3.48644 2.49936 3.31205 3.34730 3.38858 3.47719 3.65713 3.96442
4.53988 4.68821 4.86599 4.96962 4.97450 5.17560 5.26310 5.31514
5.40145 5.45566 5.47681 5.54876 5.62782 5.81107 5.87472 5.89649
5.95011 6.03917 6.11667 6.15709 6.16467 6.26782 6.34225 6.40834
6.42859 6.51972 6.57503 6.61060 6.75634 6.86540 7.10135 7.24342
7.80341 8.08891 8.26370 8.33296 8.91118 8.96448 9.45102 10.22811
11.06889
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.019358 B = 0.003373 C = 0.003035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.073773 B = 8299.521136 C = 9222.494993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.004 4.004
3 Si 1.073 2.927
4 H -0.301 1.301
5 H -0.289 1.289
6 H -0.289 1.289
7 C -0.326 4.326
8 H 0.067 0.933
9 N -0.603 5.603
10 C 0.094 3.906
11 C -0.130 4.130
12 C -0.124 4.124
13 C 0.145 3.855
14 H 0.042 0.958
15 C 0.118 3.882
16 N -0.699 5.699
17 C 0.509 3.491
18 O -0.570 6.570
19 C -0.141 4.141
20 C -0.099 4.099
21 C -0.107 4.107
22 C -0.141 4.141
23 C 0.514 3.486
24 N -0.862 5.862
25 O -0.541 6.541
26 H 0.263 0.737
27 H 0.061 0.939
28 H 0.031 0.969
29 H 0.066 0.934
30 H 0.064 0.936
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.047 0.953
34 H 0.060 0.940
35 H 0.409 0.591
36 H 0.098 0.902
37 H 0.086 0.914
38 H 0.066 0.934
39 H 0.069 0.931
40 H 0.073 0.927
41 H 0.069 0.931
42 H 0.094 0.906
43 H 0.095 0.905
44 H 0.401 0.599
45 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.964 -6.255 11.826 13.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.207 4.207
3 Si 0.906 3.094
4 H -0.229 1.229
5 H -0.217 1.217
6 H -0.217 1.217
7 C -0.454 4.454
8 H 0.085 0.915
9 N -0.330 5.330
10 C -0.031 4.031
11 C -0.168 4.168
12 C -0.162 4.162
13 C 0.038 3.962
14 H 0.059 0.941
15 C -0.009 4.009
16 N -0.351 5.351
17 C 0.296 3.704
18 O -0.451 6.451
19 C -0.181 4.181
20 C -0.137 4.137
21 C -0.145 4.145
22 C -0.181 4.181
23 C 0.300 3.700
24 N -0.425 5.425
25 O -0.417 6.417
26 H 0.073 0.927
27 H 0.079 0.921
28 H 0.048 0.952
29 H 0.085 0.915
30 H 0.082 0.918
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.065 0.935
34 H 0.078 0.922
35 H 0.248 0.752
36 H 0.116 0.884
37 H 0.104 0.896
38 H 0.084 0.916
39 H 0.088 0.912
40 H 0.091 0.909
41 H 0.088 0.912
42 H 0.112 0.888
43 H 0.114 0.886
44 H 0.229 0.771
45 H 0.229 0.771
Dipole moment (debyes) X Y Z Total
from point charges 1.861 -4.588 11.629 12.639
hybrid contribution -0.202 -1.669 0.195 1.693
sum 1.659 -6.257 11.824 13.480
Atomic orbital electron populations
1.70937 1.05903 1.29581 1.49183 1.26124 0.96409 1.01564 0.96557
0.83740 0.73526 0.75731 0.76382 1.22903 1.21678 1.21696 1.19779
0.79112 0.94602 1.51870 0.91527 1.44733 1.02138 1.25424 1.60729
1.22298 0.90179 0.93122 0.97453 1.22706 0.97858 0.98559 0.97713
1.22521 0.95841 0.99412 0.98463 1.21302 0.90549 0.94054 0.90294
0.94059 1.21825 0.81488 0.99652 0.97892 1.46083 1.11364 1.68390
1.09257 1.20593 0.89696 0.77029 0.83098 1.90599 1.64423 1.50167
1.39904 1.21619 0.93913 1.03711 0.98822 1.21287 0.94477 1.02892
0.95055 1.21394 0.96193 1.03257 0.93646 1.21697 0.91947 1.04062
1.00415 1.20910 0.90723 0.75774 0.82623 1.43953 1.14772 1.74196
1.09627 1.90764 1.64342 1.47345 1.39295 0.92708 0.92120 0.95181
0.91502 0.91760 0.91551 0.91416 0.93490 0.92178 0.75161 0.88384
0.89591 0.91552 0.91241 0.90850 0.91237 0.88796 0.88625 0.77129
0.77142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.03 13.70 55.49 0.76 -26.27 16
2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16
3 Si 1.07 26.41 24.69 -169.99 -4.20 22.21 16
4 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16
5 H -0.29 -6.59 5.97 56.52 0.34 -6.25 16
6 H -0.29 -7.01 6.40 56.52 0.36 -6.65 16
7 C -0.33 -8.41 8.37 -15.06 -0.13 -8.53 16
8 H 0.07 1.79 7.02 -52.49 -0.37 1.42 16
9 N -0.60 -13.66 2.91 -162.57 -0.47 -14.13 16
10 C 0.09 1.95 4.63 -2.53 -0.01 1.94 16
11 C -0.13 -2.09 7.09 -24.58 -0.17 -2.26 16
12 C -0.12 -1.92 6.48 -24.89 -0.16 -2.08 16
13 C 0.15 2.74 3.38 -66.95 -0.23 2.52 16
14 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16
15 C 0.12 2.27 5.23 -4.04 -0.02 2.25 16
16 N -0.70 -13.90 4.79 -60.29 -0.29 -14.19 16
17 C 0.51 10.01 7.83 -10.99 -0.09 9.92 16
18 O -0.57 -12.58 15.96 5.56 0.09 -12.49 16
19 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16
20 C -0.10 -1.38 4.50 -26.74 -0.12 -1.50 16
21 C -0.11 -1.33 4.50 -26.73 -0.12 -1.45 16
22 C -0.14 -1.34 5.70 -27.89 -0.16 -1.50 16
23 C 0.51 5.64 8.10 -10.98 -0.09 5.55 16
24 N -0.86 -5.75 8.87 31.22 0.28 -5.47 16
25 O -0.54 -8.57 16.82 5.56 0.09 -8.48 16
26 H 0.26 7.59 8.73 -40.82 -0.36 7.23 16
27 H 0.06 1.32 6.26 -51.93 -0.33 1.00 16
28 H 0.03 0.66 5.13 -51.93 -0.27 0.39 16
29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16
33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
34 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16
35 H 0.41 8.28 5.93 -40.82 -0.24 8.04 16
36 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16
37 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16
38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16
39 H 0.07 1.04 8.10 -51.93 -0.42 0.61 16
40 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16
41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16
42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
44 H 0.40 1.40 8.83 -40.82 -0.36 1.04 16
45 H 0.40 2.36 8.93 -40.82 -0.36 2.00 16
LS Contribution 356.66 15.07 5.37 5.37
Total: -1.00 -34.25 356.66 -7.41 -41.66
By element:
Atomic # 1 Polarization: 17.03 SS G_CDS: -7.50 Total: 9.53 kcal
Atomic # 6 Polarization: 3.80 SS G_CDS: -1.55 Total: 2.25 kcal
Atomic # 7 Polarization: -60.34 SS G_CDS: 0.28 Total: -60.06 kcal
Atomic # 8 Polarization: -21.15 SS G_CDS: 0.18 Total: -20.96 kcal
Atomic # 14 Polarization: 26.41 SS G_CDS: -4.20 Total: 22.21 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -34.25 -7.41 -41.66 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691102515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.263 kcal
(2) G-P(sol) polarization free energy of solvation -34.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.512 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds