Wall clock time and date at job start Tue Mar 31 2020 03:07:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86795 * 120.00045 * 2 1
4 4 H 1.48498 * 109.47056 * 5.51263 * 3 2 1
5 5 H 1.48507 * 109.47213 * 245.50875 * 3 2 1
6 6 H 1.48500 * 109.47281 * 125.51178 * 3 2 1
7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99730 * 3.80470 * 7 2 1
9 9 N 1.36939 * 119.99958 * 183.80020 * 7 2 1
10 10 C 1.47426 * 125.64732 * 326.92286 * 9 7 2
11 11 C 1.54905 * 104.83145 * 204.09408 * 10 9 7
12 12 C 1.55160 * 101.58194 * 322.98985 * 11 10 9
13 13 C 1.47019 * 125.64650 * 146.61829 * 9 7 2
14 14 H 1.08998 * 109.88376 * 59.56153 * 13 9 7
15 15 C 1.52996 * 109.88107 * 298.38836 * 13 9 7
16 16 N 1.46507 * 109.47024 * 59.10573 * 15 13 9
17 17 C 1.34766 * 119.99992 * 186.55633 * 16 15 13
18 18 O 1.21276 * 120.00472 * 359.97438 * 17 16 15
19 19 C 1.50705 * 120.00041 * 179.97438 * 17 16 15
20 20 C 1.52994 * 109.47601 * 179.97438 * 19 17 16
21 21 C 1.52997 * 109.47692 * 179.97438 * 20 19 17
22 22 C 1.52996 * 109.47332 * 180.02562 * 21 20 19
23 23 C 1.50700 * 109.46942 * 180.02562 * 22 21 20
24 24 N 1.34780 * 120.00077 * 179.97438 * 23 22 21
25 25 O 1.21281 * 120.00119 * 359.97438 * 23 22 21
26 26 H 0.97000 * 119.99963 * 185.05522 * 1 2 3
27 27 H 1.09005 * 110.36951 * 322.92952 * 10 9 7
28 28 H 1.09000 * 110.36808 * 85.25360 * 10 9 7
29 29 H 1.09000 * 111.00995 * 81.06335 * 11 10 9
30 30 H 1.09006 * 111.00674 * 204.91797 * 11 10 9
31 31 H 1.08996 * 110.71979 * 153.86613 * 12 11 10
32 32 H 1.08998 * 110.72100 * 276.96100 * 12 11 10
33 33 H 1.08997 * 109.47247 * 179.09974 * 15 13 9
34 34 H 1.09000 * 109.47726 * 299.10565 * 15 13 9
35 35 H 0.97000 * 119.99861 * 6.55448 * 16 15 13
36 36 H 1.09002 * 109.47020 * 299.99981 * 19 17 16
37 37 H 1.09007 * 109.46754 * 59.99772 * 19 17 16
38 38 H 1.09002 * 109.47119 * 300.00167 * 20 19 17
39 39 H 1.08997 * 109.46947 * 59.99667 * 20 19 17
40 40 H 1.09002 * 109.47052 * 300.00303 * 21 20 19
41 41 H 1.09007 * 109.46632 * 60.00039 * 21 20 19
42 42 H 1.08999 * 109.47203 * 299.99575 * 22 21 20
43 43 H 1.08997 * 109.47203 * 59.99825 * 22 21 20
44 44 H 0.97000 * 119.99812 * 0.02562 * 24 23 22
45 45 H 0.96999 * 120.00467 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 1.2908 2.7432 0.1345
5 1 3.0004 1.7562 -1.2742
6 1 3.2020 1.6398 1.1396
7 6 2.0103 -1.2022 0.0005
8 1 1.4720 -2.1364 -0.0611
9 7 3.3774 -1.2035 0.0791
10 6 4.2718 -0.1796 -0.4911
11 6 5.6267 -0.9033 -0.6908
12 6 5.6744 -1.8248 0.5566
13 6 4.1960 -2.2228 0.7516
14 1 4.0146 -3.1994 0.3026
15 6 3.8571 -2.2614 2.2431
16 7 2.4349 -2.5692 2.4129
17 6 1.8777 -2.5255 3.6392
18 8 2.5537 -2.2319 4.6024
19 6 0.4146 -2.8415 3.8139
20 6 0.0394 -2.7205 5.2922
21 6 -1.4461 -3.0406 5.4694
22 6 -1.8213 -2.9189 6.9476
23 6 -3.2844 -3.2349 7.1222
24 7 -3.8415 -3.1918 8.3487
25 8 -3.9606 -3.5280 6.1590
26 1 -0.4850 -0.8368 0.0740
27 1 3.8849 0.1719 -1.4477
28 1 4.3853 0.6537 0.2023
29 1 5.6249 -1.4896 -1.6097
30 1 6.4538 -0.1933 -0.6838
31 1 6.2904 -2.7031 0.3639
32 1 6.0438 -1.2795 1.4251
33 1 4.4559 -3.0299 2.7320
34 1 4.0750 -1.2917 2.6905
35 1 1.8942 -2.8043 1.6426
36 1 -0.1809 -2.1403 3.2290
37 1 0.2190 -3.8578 3.4718
38 1 0.6349 -3.4218 5.8767
39 1 0.2351 -1.7044 5.6346
40 1 -2.0412 -2.3389 4.8849
41 1 -1.6421 -4.0567 5.1268
42 1 -1.2263 -3.6204 7.5324
43 1 -1.6253 -1.9028 7.2898
44 1 -3.3008 -2.9570 9.1190
45 1 -4.7834 -3.3948 8.4610
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691102515.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:07:23
Heat of formation + Delta-G solvation = -106.017006 kcal
Electronic energy + Delta-G solvation = -24387.709365 eV
Core-core repulsion = 20824.481383 eV
Total energy + Delta-G solvation = -3563.227982 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.82232 -40.46353 -39.43386 -36.17745 -35.35806 -34.77267 -34.62942 -32.00291
-31.63694 -30.61696 -27.13967 -26.00346 -24.94088 -22.83077 -22.23673 -21.34985
-21.24210 -20.65977 -19.53133 -18.21010 -17.82094 -17.49179 -17.33661 -17.07892
-16.73360 -16.63006 -16.23444 -15.40468 -15.24659 -15.06818 -14.90232 -14.71514
-14.33647 -13.90579 -13.53425 -13.44004 -13.31041 -12.91641 -12.71544 -12.63627
-12.57827 -12.25664 -12.14405 -12.09426 -11.97522 -11.54932 -11.46826 -11.24999
-11.15839 -11.04175 -10.76395 -10.68371 -10.63942 -9.85329 -9.01493 -8.39493
-5.55887 1.39947 1.49145 1.66475 1.67238 1.73240 2.41669 2.53970
2.69592 3.20460 3.36307 3.80936 3.85476 3.89594 3.99547 4.02860
4.04869 4.16794 4.33339 4.34550 4.44817 4.48811 4.58629 4.67730
4.76004 4.77481 4.81504 4.81921 4.89075 5.01680 5.04180 5.05251
5.15998 5.27919 5.29941 5.43116 5.48121 5.65891 5.78502 5.91979
6.25546 6.48756 6.70830 6.88827 7.34890 7.38249 7.48244 8.24618
8.94326
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.019358 B = 0.003373 C = 0.003035
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1446.073773 B = 8299.521136 C = 9222.494993
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.958 5.958
2 C -0.057 4.057
3 Si 1.102 2.898
4 H -0.318 1.318
5 H -0.261 1.261
6 H -0.286 1.286
7 C -0.295 4.295
8 H 0.051 0.949
9 N -0.623 5.623
10 C 0.081 3.919
11 C -0.117 4.117
12 C -0.115 4.115
13 C 0.142 3.858
14 H 0.048 0.952
15 C 0.119 3.881
16 N -0.705 5.705
17 C 0.503 3.497
18 O -0.594 6.594
19 C -0.137 4.137
20 C -0.088 4.088
21 C -0.101 4.101
22 C -0.136 4.136
23 C 0.511 3.489
24 N -0.839 5.839
25 O -0.600 6.600
26 H 0.252 0.748
27 H 0.047 0.953
28 H 0.022 0.978
29 H 0.077 0.923
30 H 0.095 0.905
31 H 0.102 0.898
32 H 0.074 0.926
33 H 0.069 0.931
34 H 0.035 0.965
35 H 0.406 0.594
36 H 0.080 0.920
37 H 0.108 0.892
38 H 0.077 0.923
39 H 0.057 0.943
40 H 0.049 0.951
41 H 0.065 0.935
42 H 0.123 0.877
43 H 0.113 0.887
44 H 0.419 0.581
45 H 0.405 0.595
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.453 -7.076 12.835 15.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.600 5.600
2 C -0.253 4.253
3 Si 0.932 3.068
4 H -0.248 1.248
5 H -0.187 1.187
6 H -0.214 1.214
7 C -0.425 4.425
8 H 0.068 0.932
9 N -0.350 5.350
10 C -0.043 4.043
11 C -0.155 4.155
12 C -0.153 4.153
13 C 0.035 3.965
14 H 0.066 0.934
15 C -0.007 4.007
16 N -0.356 5.356
17 C 0.291 3.709
18 O -0.477 6.477
19 C -0.177 4.177
20 C -0.126 4.126
21 C -0.139 4.139
22 C -0.176 4.176
23 C 0.297 3.703
24 N -0.403 5.403
25 O -0.481 6.481
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.040 0.960
29 H 0.096 0.904
30 H 0.113 0.887
31 H 0.120 0.880
32 H 0.093 0.907
33 H 0.088 0.912
34 H 0.053 0.947
35 H 0.244 0.756
36 H 0.098 0.902
37 H 0.126 0.874
38 H 0.095 0.905
39 H 0.076 0.924
40 H 0.068 0.932
41 H 0.084 0.916
42 H 0.141 0.859
43 H 0.131 0.869
44 H 0.251 0.749
45 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges 4.409 -5.420 12.679 14.477
hybrid contribution -0.923 -1.505 -0.075 1.767
sum 3.487 -6.926 12.604 14.798
Atomic orbital electron populations
1.71005 1.07016 1.28985 1.53034 1.26965 0.96477 1.04213 0.97693
0.83390 0.72730 0.72967 0.77737 1.24760 1.18665 1.21366 1.19682
0.80982 0.93486 1.48315 0.93168 1.44912 1.01543 1.26627 1.61883
1.22402 0.92525 0.93040 0.96310 1.22676 0.95646 0.98793 0.98388
1.22553 0.93414 1.00832 0.98509 1.21509 0.92460 0.93195 0.89342
0.93445 1.21838 0.81475 0.98997 0.98375 1.46204 1.11837 1.68259
1.09285 1.21155 0.90859 0.76284 0.82607 1.90573 1.65333 1.51300
1.40497 1.21661 0.91227 1.04403 1.00393 1.21207 0.95536 1.02488
0.93397 1.21270 0.94608 1.02274 0.95788 1.21677 0.91427 1.05954
0.98500 1.21158 0.91096 0.75106 0.82948 1.43758 1.15310 1.72209
1.08996 1.90747 1.65594 1.50374 1.41339 0.93836 0.93510 0.96001
0.90443 0.88659 0.87975 0.90723 0.91246 0.94691 0.75572 0.90191
0.87377 0.90468 0.92385 0.93187 0.91606 0.85918 0.86879 0.74936
0.76433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -58.63 13.70 21.65 0.30 -58.33 16
2 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16
3 Si 1.10 53.98 24.69 68.60 1.69 55.68 16
4 H -0.32 -16.37 7.11 99.48 0.71 -15.67 16
5 H -0.26 -11.44 5.97 99.48 0.59 -10.85 16
6 H -0.29 -13.68 6.40 99.48 0.64 -13.04 16
7 C -0.30 -15.42 8.37 84.03 0.70 -14.71 16
8 H 0.05 2.77 7.02 -2.91 -0.02 2.75 16
9 N -0.62 -27.53 2.91 -668.25 -1.94 -29.47 16
10 C 0.08 3.20 4.63 86.85 0.40 3.61 16
11 C -0.12 -3.26 7.09 31.99 0.23 -3.03 16
12 C -0.11 -3.07 6.48 31.79 0.21 -2.86 16
13 C 0.14 5.02 3.38 45.35 0.15 5.17 16
14 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
15 C 0.12 4.45 5.23 86.38 0.45 4.90 16
16 N -0.71 -28.04 4.79 -463.07 -2.22 -30.26 16
17 C 0.50 19.85 7.83 87.66 0.69 20.54 16
18 O -0.59 -26.10 15.96 -3.02 -0.05 -26.14 16
19 C -0.14 -4.46 5.70 29.85 0.17 -4.29 16
20 C -0.09 -2.43 4.50 30.59 0.14 -2.29 16
21 C -0.10 -2.51 4.50 30.59 0.14 -2.37 16
22 C -0.14 -2.36 5.70 29.85 0.17 -2.19 16
23 C 0.51 10.72 8.10 87.66 0.71 11.43 16
24 N -0.84 -9.61 8.87 -173.53 -1.54 -11.15 16
25 O -0.60 -19.31 16.82 -3.03 -0.05 -19.36 16
26 H 0.25 15.32 8.73 -92.71 -0.81 14.51 16
27 H 0.05 1.95 6.26 -2.38 -0.01 1.94 16
28 H 0.02 0.92 5.13 -2.39 -0.01 0.91 16
29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
30 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16
31 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16
32 H 0.07 1.93 7.83 -2.39 -0.02 1.91 16
33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
34 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16
35 H 0.41 16.68 5.93 -92.71 -0.55 16.13 16
36 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16
37 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16
38 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16
39 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16
40 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16
41 H 0.07 1.67 8.10 -2.38 -0.02 1.65 16
42 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16
43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
44 H 0.42 1.77 8.83 -92.71 -0.82 0.95 16
45 H 0.40 4.15 8.93 -92.71 -0.83 3.33 16
Total: -1.00 -77.26 356.66 -0.59 -77.86
By element:
Atomic # 1 Polarization: 31.46 SS G_CDS: -1.41 Total: 30.05 kcal
Atomic # 6 Polarization: 6.51 SS G_CDS: 4.62 Total: 11.13 kcal
Atomic # 7 Polarization: -123.80 SS G_CDS: -5.41 Total: -129.21 kcal
Atomic # 8 Polarization: -45.41 SS G_CDS: -0.10 Total: -45.51 kcal
Atomic # 14 Polarization: 53.98 SS G_CDS: 1.69 Total: 55.68 kcal
Total: -77.26 -0.59 -77.86 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691102515.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.160 kcal
(2) G-P(sol) polarization free energy of solvation -77.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.857 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.017 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds