Wall clock time and date at job start Tue Mar 31 2020 04:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47596 * 2 1 4 4 H 1.09001 * 109.47228 * 305.00335 * 3 2 1 5 5 N 1.46501 * 109.47126 * 64.99637 * 3 2 1 6 6 C 1.34776 * 120.00241 * 275.00296 * 5 3 2 7 7 C 1.50703 * 120.00063 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00157 * 359.97438 * 6 5 3 9 9 C 1.50696 * 109.47398 * 184.99931 * 3 2 1 10 10 O 1.21279 * 120.00226 * 240.00091 * 9 3 2 11 11 N 1.34778 * 119.99725 * 60.00082 * 9 3 2 12 12 C 1.46501 * 119.99794 * 179.97438 * 11 9 3 13 13 C 1.52994 * 109.47166 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.85266 * 316.19942 * 13 12 11 15 15 C 1.54056 * 113.62173 * 87.50679 * 13 12 11 16 16 C 1.53782 * 86.98725 * 139.97621 * 15 13 12 17 17 H 1.09000 * 113.61782 * 219.97846 * 16 15 13 18 18 N 1.46506 * 113.60942 * 89.16262 * 16 15 13 19 19 C 1.36938 * 119.99589 * 105.86540 * 18 16 15 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99817 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99673 * 359.71804 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47071 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47211 * 119.99797 * 23 21 19 26 26 H 1.48493 * 109.47327 * 239.99664 * 23 21 19 27 27 C 1.53781 * 87.17496 * 334.57365 * 16 15 13 28 28 H 1.08996 * 109.47613 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46890 * 300.00476 * 1 2 3 30 30 H 1.09004 * 109.46883 * 59.99584 * 1 2 3 31 31 H 1.09004 * 109.46979 * 239.99997 * 2 1 3 32 32 H 1.08998 * 109.47273 * 119.99836 * 2 1 3 33 33 H 0.97001 * 119.99949 * 95.00598 * 5 3 2 34 34 H 1.09004 * 109.46557 * 60.00078 * 7 6 5 35 35 H 1.08993 * 109.47158 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.47064 * 300.00336 * 7 6 5 37 37 H 0.96995 * 120.00407 * 0.02562 * 11 9 3 38 38 H 1.09003 * 109.47135 * 59.99847 * 12 11 9 39 39 H 1.09002 * 109.47596 * 299.99896 * 12 11 9 40 40 H 1.09000 * 113.60755 * 25.47248 * 15 13 12 41 41 H 1.08996 * 113.69699 * 254.49922 * 15 13 12 42 42 H 0.96999 * 120.00080 * 285.86030 * 18 16 15 43 43 H 0.97000 * 120.00043 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.61637 * 140.01866 * 27 16 15 45 45 H 1.09001 * 113.61227 * 270.83937 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6645 1.3669 7 6 0.0363 3.3378 2.6548 8 8 -0.3392 2.6328 0.4341 9 6 3.5419 1.4442 -0.1238 10 8 4.2217 1.9434 0.7477 11 7 4.1297 0.8910 -1.2032 12 6 5.5897 0.8932 -1.3238 13 6 5.9945 0.2085 -2.6307 14 1 5.4361 -0.7085 -2.8188 15 6 6.0416 1.1632 -3.8389 16 6 7.3119 0.4154 -4.2772 17 1 8.0879 1.0691 -4.6756 18 7 7.0452 -0.7406 -5.1367 19 6 7.3139 -0.6730 -6.4778 20 1 7.7220 0.2325 -6.9019 21 6 7.0607 -1.7682 -7.2924 22 7 6.5677 -2.8733 -6.7747 23 14 7.4265 -1.6759 -9.1218 24 1 7.9760 -0.3359 -9.4497 25 1 8.4194 -2.7201 -9.4815 26 1 6.1746 -1.8982 -9.8888 27 6 7.5150 0.0490 -2.7975 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1232 1.9978 34 1 0.7278 4.1530 2.8678 35 1 -0.9747 3.7338 2.5598 36 1 0.0674 2.6131 3.4684 37 1 3.5861 0.4921 -1.9004 38 1 6.0247 0.3544 -0.4819 39 1 5.9528 1.9210 -1.3241 40 1 6.2194 2.2035 -3.5665 41 1 5.2044 1.0417 -4.5261 42 1 6.6785 -1.5538 -4.7559 43 1 6.3911 -3.6387 -7.3438 44 1 7.8663 -0.9714 -2.6446 45 1 8.0961 0.7846 -2.2413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691523788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:09 Heat of formation + Delta-G solvation = -54.343567 kcal Electronic energy + Delta-G solvation = -23932.473030 eV Core-core repulsion = 20371.485777 eV Total energy + Delta-G solvation = -3560.987254 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72986 -39.43484 -38.51193 -35.60749 -34.86744 -33.32604 -32.75663 -30.28675 -30.01760 -28.28724 -26.27787 -25.10748 -23.72024 -22.41812 -21.78832 -20.91747 -20.48461 -18.57439 -17.90437 -17.33072 -17.04183 -16.28240 -16.00447 -15.59370 -15.33586 -14.88469 -14.37574 -14.26942 -14.15575 -13.79976 -13.65405 -13.35197 -12.96730 -12.88587 -12.77771 -12.40451 -12.33595 -12.16933 -11.96239 -11.76592 -11.43273 -11.15715 -11.08034 -10.88695 -10.54651 -10.25420 -10.16321 -10.14830 -9.89259 -9.73282 -9.55926 -9.32865 -9.12412 -8.92369 -7.03774 -5.84350 -3.13448 2.30582 2.40353 2.64719 3.24402 3.39360 3.45532 3.47508 4.34601 4.51911 4.52783 4.62645 4.75831 4.91936 4.97702 4.99641 5.03334 5.10053 5.17309 5.27372 5.41630 5.49834 5.52900 5.55560 5.63864 5.72764 5.79192 5.82515 5.88800 6.03906 6.07400 6.16061 6.17473 6.28662 6.32321 6.53607 6.69960 6.84074 6.99483 7.20762 7.31993 7.66477 7.92079 7.98484 8.34855 9.45727 10.02802 10.36945 11.38133 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.002583 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.975378 B =10838.890417 C =11469.622167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.125 3.875 4 H 0.115 0.885 5 N -0.713 5.713 6 C 0.512 3.488 7 C -0.173 4.173 8 O -0.541 6.541 9 C 0.509 3.491 10 O -0.544 6.544 11 N -0.716 5.716 12 C 0.131 3.869 13 C -0.120 4.120 14 H 0.094 0.906 15 C -0.169 4.169 16 C 0.167 3.833 17 H 0.061 0.939 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.147 4.147 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.410 0.590 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.405 0.595 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 8.825 19.138 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.133 0.867 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.233 4.233 8 O -0.418 6.418 9 C 0.294 3.706 10 O -0.422 6.422 11 N -0.367 5.367 12 C 0.008 3.992 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.210 4.210 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.186 4.186 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.247 0.753 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.118 9.186 18.881 23.308 hybrid contribution 0.097 -0.501 -0.837 0.981 sum -10.021 8.685 18.044 22.392 Atomic orbital electron populations 1.21796 0.93915 1.01143 1.03205 1.21928 0.97882 0.93817 1.03274 1.20887 0.91629 0.95821 0.89998 0.86744 1.45793 1.17139 1.57703 1.16062 1.20776 0.81063 0.77849 0.90371 1.21910 1.04337 1.01870 0.95179 1.90746 1.51170 1.58870 1.41038 1.20542 0.89865 0.78005 0.82174 1.90683 1.65287 1.45789 1.40436 1.46027 1.08805 1.59286 1.22564 1.21532 0.78454 1.00988 0.98251 1.22772 0.98155 0.99800 0.93163 0.88783 1.23943 1.02899 0.97203 0.96956 1.21052 0.94194 0.90303 0.88958 0.92042 1.42177 1.75620 1.11758 1.04912 1.19330 1.35458 0.98481 0.84022 0.90935 1.24768 1.01770 0.96072 0.98296 1.69668 1.50298 1.03473 1.34604 0.86098 0.77467 0.77274 0.85234 1.20489 1.21814 1.21823 1.23420 0.93949 1.01841 0.99430 0.92958 0.92479 0.91790 0.90255 0.91169 0.75347 0.89261 0.88854 0.89366 0.75991 0.91647 0.91433 0.91417 0.91413 0.78121 0.93470 0.91286 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.52 37.15 0.32 -1.04 16 2 C -0.13 -1.14 5.55 -26.73 -0.15 -1.29 16 3 C 0.13 1.23 2.67 -69.08 -0.18 1.05 16 4 H 0.11 1.21 7.58 -51.93 -0.39 0.82 16 5 N -0.71 -6.41 4.90 -54.93 -0.27 -6.68 16 6 C 0.51 4.79 6.51 -10.98 -0.07 4.72 16 7 C -0.17 -0.94 10.32 36.01 0.37 -0.57 16 8 O -0.54 -6.96 14.23 5.56 0.08 -6.88 16 9 C 0.51 5.93 7.22 -10.99 -0.08 5.85 16 10 O -0.54 -7.84 15.84 5.56 0.09 -7.76 16 11 N -0.72 -7.92 5.42 -60.30 -0.33 -8.25 16 12 C 0.13 1.61 5.51 -4.04 -0.02 1.59 16 13 C -0.12 -1.69 3.65 -89.66 -0.33 -2.01 16 14 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 15 C -0.17 -2.70 7.45 -25.77 -0.19 -2.89 16 16 C 0.17 3.16 4.55 -67.11 -0.31 2.85 16 17 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 18 N -0.71 -16.99 5.31 -52.63 -0.28 -17.27 16 19 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C -0.15 -2.24 7.38 -25.91 -0.19 -2.43 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 5.65 -51.93 -0.29 0.29 16 30 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.08 0.63 7.43 -51.93 -0.39 0.25 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.41 3.31 7.79 -40.82 -0.32 3.00 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.41 3.92 7.83 -40.82 -0.32 3.60 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 40 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.38 9.78 7.90 -40.82 -0.32 9.46 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -32.44 367.80 -7.99 -40.44 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.45 Total: 11.98 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.08 Total: -1.33 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.15 Total: -58.95 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.17 Total: -14.64 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.44 -7.99 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691523788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.908 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds