Wall clock time and date at job start Tue Mar 31 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99566 * 2 1 4 4 N 1.34770 * 120.00253 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00108 * 179.97438 * 4 2 1 6 6 H 1.09002 * 109.46675 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46995 * 59.99854 * 5 4 2 8 8 C 1.53001 * 109.47247 * 63.72974 * 7 5 4 9 9 C 1.52995 * 109.47394 * 65.82882 * 8 7 5 10 10 C 1.52999 * 109.47047 * 185.83545 * 8 7 5 11 11 C 1.50693 * 109.47131 * 299.99688 * 5 4 2 12 12 O 1.21279 * 120.00360 * 19.99933 * 11 5 4 13 13 N 1.34775 * 119.99965 * 200.00124 * 11 5 4 14 14 C 1.46501 * 120.00162 * 180.02562 * 13 11 5 15 15 C 1.53952 * 113.74307 * 253.74035 * 14 13 11 16 16 N 1.47813 * 86.03642 * 222.08123 * 15 14 13 17 17 C 1.36936 * 134.45420 * 204.64088 * 16 15 14 18 18 H 1.07995 * 119.99608 * 179.87195 * 17 16 15 19 19 C 1.38811 * 119.99829 * 359.86854 * 17 16 15 20 20 N 1.31610 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99671 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47466 * 90.00102 * 21 19 17 23 23 H 1.48500 * 109.47624 * 209.99937 * 21 19 17 24 24 H 1.48504 * 109.47502 * 330.00155 * 21 19 17 25 25 C 1.47577 * 91.05133 * 24.54801 * 16 15 14 26 26 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47478 * 300.00084 * 1 2 3 28 28 H 1.09002 * 109.47264 * 59.99928 * 1 2 3 29 29 H 0.97002 * 120.00128 * 359.71929 * 4 2 1 30 30 H 1.09000 * 109.46881 * 183.72341 * 7 5 4 31 31 H 1.08993 * 109.47440 * 303.72443 * 7 5 4 32 32 H 1.09005 * 109.46635 * 305.83087 * 8 7 5 33 33 H 1.09005 * 109.47062 * 60.00467 * 9 8 7 34 34 H 1.09004 * 109.47113 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47541 * 300.00406 * 9 8 7 36 36 H 1.09000 * 109.47024 * 60.42354 * 10 8 7 37 37 H 1.09004 * 109.47172 * 180.42524 * 10 8 7 38 38 H 1.08998 * 109.46944 * 300.42516 * 10 8 7 39 39 H 0.97001 * 120.00356 * 359.97438 * 13 11 5 40 40 H 1.09004 * 112.94086 * 25.32829 * 14 13 11 41 41 H 1.09001 * 113.76335 * 336.35051 * 15 14 13 42 42 H 1.09004 * 113.76687 * 107.74158 * 15 14 13 43 43 H 0.97008 * 119.99867 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.77195 * 221.15002 * 25 16 15 45 45 H 1.09002 * 113.77295 * 89.75492 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0092 -2.1948 -0.0010 7 6 4.1563 -0.4460 1.2481 8 6 3.7249 -1.2197 2.4956 9 6 4.4258 -2.5794 2.5203 10 6 4.1080 -0.4256 3.7460 11 6 4.1477 -0.4565 -1.2316 12 8 3.4191 0.3051 -1.8316 13 7 5.4062 -0.6673 -1.6653 14 6 5.8943 0.0240 -2.8612 15 6 6.0138 -0.8856 -4.0975 16 7 7.2966 -0.1972 -4.3529 17 6 8.0570 0.0312 -5.4686 18 1 8.9834 0.5803 -5.3875 19 6 7.6369 -0.4430 -6.7037 20 7 6.5077 -1.1118 -6.8025 21 14 8.6738 -0.1308 -8.2258 22 1 9.6391 -1.2451 -8.4044 23 1 7.7913 -0.0449 -9.4170 24 1 9.4156 1.1458 -8.0662 25 6 7.4276 0.1470 -2.9238 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6960 -2.0072 0.0032 30 1 5.2443 -0.3879 1.2149 31 1 3.7396 0.5605 1.2825 32 1 2.6451 -1.3678 2.4759 33 1 5.5055 -2.4314 2.5401 34 1 4.1187 -3.1304 3.4094 35 1 4.1529 -3.1452 1.6295 36 1 3.6026 0.5401 3.7321 37 1 3.8074 -0.9802 4.6350 38 1 5.1868 -0.2709 3.7618 39 1 5.9892 -1.2761 -1.1852 40 1 5.3707 0.9603 -3.0542 41 1 6.1229 -1.9429 -3.8561 42 1 5.2542 -0.6975 -4.8564 43 1 6.2144 -1.4435 -7.6656 44 1 7.7948 1.1579 -2.7472 45 1 7.9531 -0.6063 -2.3368 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692255914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:13 Heat of formation + Delta-G solvation = -26.516152 kcal Electronic energy + Delta-G solvation = -24946.378288 eV Core-core repulsion = 21386.597722 eV Total energy + Delta-G solvation = -3559.780566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.01 seconds Orbital eigenvalues (eV) -40.49341 -38.75825 -37.35717 -36.66836 -34.03322 -33.40287 -31.83040 -30.76644 -28.47535 -27.41945 -27.31366 -24.81303 -24.70099 -22.82511 -21.19619 -20.21903 -19.66984 -19.31250 -17.53793 -16.78305 -16.68726 -16.05994 -15.48691 -15.18008 -14.93812 -14.66020 -14.47592 -14.10948 -13.81071 -13.61868 -13.49412 -12.87047 -12.68544 -12.58410 -12.46170 -12.38006 -12.02209 -11.88933 -11.78192 -11.41942 -11.39464 -11.00263 -10.97596 -10.88382 -10.85105 -10.73321 -10.37909 -10.04051 -9.84900 -9.52016 -9.48000 -8.79423 -8.73831 -8.32613 -6.90129 -5.75956 -3.09703 2.75803 3.01070 3.20196 3.40146 3.44653 3.47461 3.67021 4.46354 4.60228 4.64763 4.69579 4.87531 4.94542 5.04949 5.09326 5.23325 5.24030 5.37237 5.40638 5.48234 5.50298 5.52894 5.62712 5.63731 5.70977 5.77126 5.84011 6.00226 6.06393 6.13000 6.20690 6.25580 6.42229 6.45153 6.61162 6.83860 7.25825 7.41184 7.52611 7.58250 7.96037 7.98887 8.39760 8.70977 9.04181 9.70537 10.57727 11.40793 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022719 B = 0.003335 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.131068 B = 8394.075619 C = 9103.637953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.515 3.485 3 O -0.513 6.513 4 N -0.721 5.721 5 C 0.133 3.867 6 H 0.106 0.894 7 C -0.128 4.128 8 C -0.092 4.092 9 C -0.151 4.151 10 C -0.146 4.146 11 C 0.497 3.503 12 O -0.513 6.513 13 N -0.718 5.718 14 C 0.095 3.905 15 C 0.155 3.845 16 N -0.607 5.607 17 C -0.225 4.225 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.112 3.888 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.401 0.599 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.393 0.607 40 H 0.108 0.892 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.254 0.746 44 H 0.049 0.951 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -4.918 21.521 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.301 3.699 3 O -0.387 6.387 4 N -0.375 5.375 5 C 0.024 3.976 6 H 0.123 0.877 7 C -0.166 4.166 8 C -0.110 4.110 9 C -0.209 4.209 10 C -0.204 4.204 11 C 0.280 3.720 12 O -0.386 6.386 13 N -0.370 5.370 14 C -0.010 4.010 15 C 0.028 3.972 16 N -0.334 5.334 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.565 5.565 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.015 4.015 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.227 0.773 40 H 0.126 0.874 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.520 -3.554 20.702 23.062 hybrid contribution 0.719 -0.873 -0.727 1.344 sum -8.801 -4.427 19.975 22.272 Atomic orbital electron populations 1.21818 0.92299 1.03695 1.05013 1.20585 0.90147 0.83640 0.75480 1.90721 1.70073 1.31153 1.46759 1.45726 1.05451 1.09001 1.77297 1.20927 0.81858 1.00776 0.94080 0.87658 1.22008 1.01357 1.01484 0.91784 1.21058 1.00427 0.95071 0.94464 1.21938 1.00846 0.96539 1.01549 1.21815 1.01619 1.00001 0.96930 1.20759 0.82533 0.82904 0.85772 1.90744 1.55551 1.35276 1.57071 1.46108 1.13540 1.47300 1.30029 1.23827 0.94696 0.98048 0.84415 1.22701 0.89242 0.93252 0.91969 1.45714 1.23530 1.63350 1.00797 1.18991 1.02184 1.30050 0.84021 0.90067 1.24814 0.97725 1.00238 0.97586 1.69834 1.21770 1.41150 1.23783 0.86091 0.79071 0.77831 0.82575 1.21596 1.21579 1.20535 1.22869 0.92773 0.98264 0.87545 0.91012 0.89244 0.88827 0.76500 0.90703 0.88925 0.91168 0.92408 0.92789 0.92595 0.92696 0.92848 0.92603 0.77349 0.87382 0.95492 0.90661 0.93583 0.93326 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.39 36.01 0.37 -1.06 16 2 C 0.51 6.62 6.70 -10.99 -0.07 6.54 16 3 O -0.51 -9.17 12.96 -17.93 -0.23 -9.40 16 4 N -0.72 -7.39 4.50 -54.94 -0.25 -7.64 16 5 C 0.13 1.48 2.88 -69.09 -0.20 1.29 16 6 H 0.11 0.87 6.43 -51.93 -0.33 0.54 16 7 C -0.13 -1.34 3.99 -26.73 -0.11 -1.45 16 8 C -0.09 -0.73 2.86 -90.62 -0.26 -0.98 16 9 C -0.15 -0.98 8.97 37.16 0.33 -0.65 16 10 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 11 C 0.50 8.16 6.82 -10.99 -0.07 8.08 16 12 O -0.51 -10.94 13.30 -17.93 -0.24 -11.18 16 13 N -0.72 -11.36 5.37 -55.33 -0.30 -11.66 16 14 C 0.10 1.94 4.40 -70.13 -0.31 1.63 16 15 C 0.15 3.80 7.33 -2.83 -0.02 3.78 16 16 N -0.61 -15.97 3.70 -177.86 -0.66 -16.63 16 17 C -0.22 -6.44 10.70 -15.06 -0.16 -6.61 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.90 11.39 55.49 0.63 -27.27 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.11 2.32 8.69 -2.97 -0.03 2.29 16 26 H 0.07 0.39 7.91 -51.93 -0.41 -0.02 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.40 2.67 8.67 -40.82 -0.35 2.32 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.28 6.07 -51.93 -0.32 0.97 16 32 H 0.07 0.56 7.55 -51.93 -0.39 0.17 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.33 6.51 -51.93 -0.34 -0.01 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.39 4.90 8.71 -40.82 -0.36 4.55 16 40 H 0.11 2.47 7.51 -51.93 -0.39 2.08 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -37.35 362.72 -8.33 -45.68 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.46 Total: 3.38 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.28 Total: 11.78 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.57 Total: -63.19 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.47 Total: -20.58 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.35 -8.33 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692255914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.166 kcal (2) G-P(sol) polarization free energy of solvation -37.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds