Wall clock time and date at job start Tue Mar 31 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 N 1.46491 * 109.47316 * 174.99736 * 6 4 2 8 8 C 1.34777 * 120.00179 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00263 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99875 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.43911 * 300.70052 * 10 8 7 12 12 C 1.54632 * 110.48434 * 178.15892 * 10 8 7 13 13 C 1.54474 * 101.76756 * 216.52728 * 12 10 8 14 14 N 1.46766 * 105.47163 * 25.41537 * 13 12 10 15 15 C 1.46501 * 124.34854 * 162.98047 * 14 13 12 16 16 C 1.34650 * 111.33880 * 342.87171 * 14 13 12 17 17 O 1.21282 * 125.07390 * 180.53290 * 16 14 13 18 18 N 1.46507 * 109.46688 * 299.99730 * 4 2 1 19 19 C 1.36934 * 119.99910 * 85.00020 * 18 4 2 20 20 H 1.08005 * 119.99985 * 359.97438 * 19 18 4 21 21 C 1.38811 * 120.00174 * 179.97438 * 19 18 4 22 22 N 1.31622 * 119.99790 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00587 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47103 * 89.99594 * 23 21 19 25 25 H 1.48497 * 109.47148 * 210.00402 * 23 21 19 26 26 H 1.48506 * 109.46740 * 329.99973 * 23 21 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47097 * 295.00233 * 6 4 2 35 35 H 1.09001 * 109.46547 * 54.99718 * 6 4 2 36 36 H 0.97008 * 120.00144 * 0.02562 * 7 6 4 37 37 H 1.09002 * 110.97259 * 334.64985 * 12 10 8 38 38 H 1.09000 * 110.96863 * 98.37201 * 12 10 8 39 39 H 1.09002 * 110.24819 * 144.41795 * 13 12 10 40 40 H 1.08999 * 110.24927 * 266.41818 * 13 12 10 41 41 H 1.09001 * 109.47260 * 89.99866 * 15 14 13 42 42 H 1.08998 * 109.47228 * 210.00362 * 15 14 13 43 43 H 1.08999 * 109.47026 * 330.00233 * 15 14 13 44 44 H 0.96993 * 119.99727 * 264.99832 * 18 4 2 45 45 H 0.96998 * 120.00370 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 7 4.0584 -1.5128 -2.3810 8 6 5.3834 -1.6532 -2.5833 9 8 6.1716 -1.1241 -1.8285 10 6 5.8858 -2.4686 -3.7469 11 1 5.5218 -3.4938 -3.6786 12 6 7.4311 -2.4452 -3.7971 13 6 7.6965 -2.4182 -5.3186 14 7 6.4965 -1.8195 -5.9148 15 6 6.4336 -1.2705 -7.2716 16 6 5.4596 -1.8415 -5.0560 17 8 4.3477 -1.4202 -5.2950 18 7 1.5517 -2.1025 -1.2493 19 6 0.3102 -2.3897 -1.7504 20 1 -0.3092 -1.5980 -2.1453 21 6 -0.1524 -3.6985 -1.7509 22 7 0.6023 -4.6633 -1.2691 23 14 -1.8457 -4.0906 -2.4351 24 1 -1.7362 -4.3912 -3.8853 25 1 -2.4054 -5.2692 -1.7260 26 1 -2.7417 -2.9228 -2.2380 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 3.9330 0.3032 -1.3394 35 1 3.9336 -1.1547 -0.3183 36 1 3.4280 -1.9357 -2.9850 37 1 7.8235 -1.5489 -3.3166 38 1 7.8497 -3.3435 -3.3434 39 1 8.5719 -1.8069 -5.5380 40 1 7.8393 -3.4313 -5.6947 41 1 6.1373 -2.0552 -7.9677 42 1 5.7031 -0.4621 -7.3029 43 1 7.4136 -0.8857 -7.5536 44 1 2.1078 -2.8134 -0.8943 45 1 0.2793 -5.5780 -1.2698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698975462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:29 Heat of formation + Delta-G solvation = -66.033881 kcal Electronic energy + Delta-G solvation = -25160.965356 eV Core-core repulsion = 21599.471172 eV Total energy + Delta-G solvation = -3561.494184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87074 -38.83884 -37.19411 -36.45854 -33.76452 -33.06888 -32.90633 -30.36257 -28.73905 -27.40360 -26.86463 -26.01809 -23.84253 -22.56911 -21.49726 -20.51741 -19.64530 -19.07147 -17.50790 -17.11186 -16.81429 -16.19287 -15.62670 -15.28388 -14.96432 -14.51112 -14.01120 -13.89957 -13.71801 -13.60090 -13.41916 -13.10947 -13.00688 -12.71614 -12.55316 -12.39313 -12.09899 -11.97826 -11.83210 -11.57802 -11.20406 -10.99181 -10.90842 -10.76120 -10.59936 -10.26091 -10.05326 -9.96953 -9.85632 -9.59591 -9.47725 -8.89775 -8.86506 -8.53873 -6.97345 -5.76968 -3.05338 2.38121 2.70636 3.03678 3.43959 3.50165 3.50590 3.59869 4.16112 4.30580 4.59096 4.76797 4.81378 5.03125 5.12720 5.17627 5.35003 5.35961 5.39700 5.45902 5.52092 5.59751 5.68369 5.69688 5.81802 5.94212 5.97118 6.05906 6.22720 6.29564 6.30933 6.43094 6.50838 6.59903 6.69179 6.73141 6.86870 6.98584 7.13292 7.34648 7.72623 7.97268 8.04974 8.40597 8.56575 9.52724 10.07231 10.43541 11.45190 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004643 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.524062 B = 6028.598787 C = 7178.765296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.169 3.831 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.696 5.696 8 C 0.528 3.472 9 O -0.552 6.552 10 C -0.150 4.150 11 H 0.137 0.863 12 C -0.115 4.115 13 C 0.103 3.897 14 N -0.626 5.626 15 C 0.098 3.902 16 C 0.527 3.473 17 O -0.507 6.507 18 N -0.720 5.720 19 C -0.232 4.232 20 H 0.073 0.927 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.282 1.282 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.417 0.583 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.474 5.868 -7.193 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.011 4.011 7 N -0.347 5.347 8 C 0.312 3.688 9 O -0.432 6.432 10 C -0.175 4.175 11 H 0.154 0.846 12 C -0.153 4.153 13 C -0.020 4.020 14 N -0.362 5.362 15 C -0.044 4.044 16 C 0.313 3.687 17 O -0.381 6.381 18 N -0.362 5.362 19 C -0.363 4.363 20 H 0.091 0.909 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.207 1.207 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.208 6.494 -6.955 17.100 hybrid contribution -1.066 -0.855 -0.571 1.481 sum 13.142 5.639 -7.526 16.160 Atomic orbital electron populations 1.21817 0.94933 1.03914 0.98964 1.21721 0.96926 0.94378 1.00004 1.21940 1.00460 0.97375 1.00903 1.20551 0.89300 0.88226 0.96040 0.92755 1.21757 0.95825 0.94829 0.88661 1.45971 1.06529 1.51798 1.30369 1.19622 0.83020 0.80915 0.85252 1.90652 1.55573 1.49349 1.47595 1.22170 0.98955 1.02862 0.93497 0.84568 1.22576 0.92246 1.05761 0.94730 1.22168 0.87778 0.98718 0.93349 1.48137 1.12336 1.60943 1.14772 1.21540 1.02704 0.99016 0.81150 1.20422 0.84335 0.78481 0.85501 1.90802 1.20583 1.47180 1.79576 1.42433 1.18108 1.01870 1.73745 1.19211 0.92674 0.92405 1.32040 0.90920 1.24706 0.98332 0.95856 1.01884 1.69659 1.36910 0.99794 1.51622 0.86260 0.84316 0.77563 0.78499 1.21804 1.21931 1.20745 0.89481 0.95032 0.94060 0.91899 0.93192 0.93582 0.93081 0.91667 0.91802 0.74509 0.88145 0.88580 0.90108 0.90844 0.92521 0.90612 0.91061 0.78165 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.26 37.16 0.31 -2.29 16 2 C -0.11 -1.93 2.69 -90.62 -0.24 -2.17 16 3 C -0.15 -2.21 8.84 37.16 0.33 -1.88 16 4 C 0.17 3.31 2.18 -67.93 -0.15 3.16 16 5 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 6 C 0.11 2.06 4.73 -4.05 -0.02 2.04 16 7 N -0.70 -12.76 5.10 -60.30 -0.31 -13.07 16 8 C 0.53 9.04 7.14 -10.98 -0.08 8.97 16 9 O -0.55 -10.46 15.50 5.56 0.09 -10.38 16 10 C -0.15 -2.02 3.32 -91.78 -0.30 -2.33 16 11 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16 12 C -0.12 -1.13 6.46 -25.10 -0.16 -1.29 16 13 C 0.10 0.80 7.35 -3.12 -0.02 0.78 16 14 N -0.63 -6.91 3.34 -180.22 -0.60 -7.51 16 15 C 0.10 0.85 10.96 59.85 0.66 1.50 16 16 C 0.53 7.78 7.45 -10.76 -0.08 7.70 16 17 O -0.51 -9.47 16.58 5.56 0.09 -9.38 16 18 N -0.72 -16.98 4.44 -53.42 -0.24 -17.21 16 19 C -0.23 -6.08 7.57 -15.06 -0.11 -6.19 16 20 H 0.07 1.88 7.39 -52.48 -0.39 1.49 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.18 13.06 55.49 0.72 -26.46 16 23 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 34 H 0.07 1.12 6.71 -51.93 -0.35 0.78 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.42 8.27 7.50 -40.82 -0.31 7.97 16 37 H 0.10 1.13 7.03 -51.93 -0.36 0.76 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -32.13 362.36 -7.20 -39.33 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.42 Total: 14.58 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 0.02 Total: 7.58 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.42 Total: -64.26 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.18 Total: -19.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.13 -7.20 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698975462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.699 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds