Wall clock time and date at job start Tue Mar 31 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 N 1.46491 * 109.47316 * 174.99736 * 6 4 2 8 8 C 1.34777 * 120.00179 * 179.97438 * 7 6 4 9 9 O 1.21278 * 120.00263 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99875 * 179.97438 * 8 7 6 11 11 H 1.09001 * 110.43911 * 300.70052 * 10 8 7 12 12 C 1.54632 * 110.48434 * 178.15892 * 10 8 7 13 13 C 1.54474 * 101.76756 * 216.52728 * 12 10 8 14 14 N 1.46766 * 105.47163 * 25.41537 * 13 12 10 15 15 C 1.46501 * 124.34854 * 162.98047 * 14 13 12 16 16 C 1.34650 * 111.33880 * 342.87171 * 14 13 12 17 17 O 1.21282 * 125.07390 * 180.53290 * 16 14 13 18 18 N 1.46507 * 109.46688 * 299.99730 * 4 2 1 19 19 C 1.36934 * 119.99910 * 85.00020 * 18 4 2 20 20 H 1.08005 * 119.99985 * 359.97438 * 19 18 4 21 21 C 1.38811 * 120.00174 * 179.97438 * 19 18 4 22 22 N 1.31622 * 119.99790 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00587 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47103 * 89.99594 * 23 21 19 25 25 H 1.48497 * 109.47148 * 210.00402 * 23 21 19 26 26 H 1.48506 * 109.46740 * 329.99973 * 23 21 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47097 * 295.00233 * 6 4 2 35 35 H 1.09001 * 109.46547 * 54.99718 * 6 4 2 36 36 H 0.97008 * 120.00144 * 0.02562 * 7 6 4 37 37 H 1.09002 * 110.97259 * 334.64985 * 12 10 8 38 38 H 1.09000 * 110.96863 * 98.37201 * 12 10 8 39 39 H 1.09002 * 110.24819 * 144.41795 * 13 12 10 40 40 H 1.08999 * 110.24927 * 266.41818 * 13 12 10 41 41 H 1.09001 * 109.47260 * 89.99866 * 15 14 13 42 42 H 1.08998 * 109.47228 * 210.00362 * 15 14 13 43 43 H 1.08999 * 109.47026 * 330.00233 * 15 14 13 44 44 H 0.96993 * 119.99727 * 264.99832 * 18 4 2 45 45 H 0.96998 * 120.00370 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 7 4.0584 -1.5128 -2.3810 8 6 5.3834 -1.6532 -2.5833 9 8 6.1716 -1.1241 -1.8285 10 6 5.8858 -2.4686 -3.7469 11 1 5.5218 -3.4938 -3.6786 12 6 7.4311 -2.4452 -3.7971 13 6 7.6965 -2.4182 -5.3186 14 7 6.4965 -1.8195 -5.9148 15 6 6.4336 -1.2705 -7.2716 16 6 5.4596 -1.8415 -5.0560 17 8 4.3477 -1.4202 -5.2950 18 7 1.5517 -2.1025 -1.2493 19 6 0.3102 -2.3897 -1.7504 20 1 -0.3092 -1.5980 -2.1453 21 6 -0.1524 -3.6985 -1.7509 22 7 0.6023 -4.6633 -1.2691 23 14 -1.8457 -4.0906 -2.4351 24 1 -1.7362 -4.3912 -3.8853 25 1 -2.4054 -5.2692 -1.7260 26 1 -2.7417 -2.9228 -2.2380 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 3.9330 0.3032 -1.3394 35 1 3.9336 -1.1547 -0.3183 36 1 3.4280 -1.9357 -2.9850 37 1 7.8235 -1.5489 -3.3166 38 1 7.8497 -3.3435 -3.3434 39 1 8.5719 -1.8069 -5.5380 40 1 7.8393 -3.4313 -5.6947 41 1 6.1373 -2.0552 -7.9677 42 1 5.7031 -0.4621 -7.3029 43 1 7.4136 -0.8857 -7.5536 44 1 2.1078 -2.8134 -0.8943 45 1 0.2793 -5.5780 -1.2698 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698975462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:28 Heat of formation + Delta-G solvation = -89.038856 kcal Electronic energy + Delta-G solvation = -25161.962926 eV Core-core repulsion = 21599.471172 eV Total energy + Delta-G solvation = -3562.491754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96261 -40.17077 -38.75340 -37.53403 -35.25986 -34.92629 -33.82867 -32.18677 -30.06604 -28.60725 -27.71619 -27.43696 -25.63500 -23.89655 -22.76020 -21.72819 -20.97553 -20.43164 -19.21560 -18.41496 -17.89363 -17.34601 -17.03624 -16.85383 -16.17210 -15.95941 -15.56127 -15.23597 -14.99400 -14.93602 -14.73527 -14.60572 -14.17277 -13.79579 -13.70266 -13.46610 -13.43093 -13.13783 -12.92211 -12.87339 -12.72483 -12.67391 -12.45405 -12.30481 -12.01858 -12.01368 -11.78014 -11.47493 -11.30218 -11.14384 -10.92091 -10.79894 -10.01517 -9.74800 -8.96402 -7.88460 -5.15112 1.22823 1.48307 1.49326 1.54566 1.56452 2.02434 2.33137 2.58927 3.22677 3.36742 3.44917 3.79834 3.85545 3.91192 3.98477 4.17653 4.27953 4.31194 4.36876 4.41241 4.44148 4.61589 4.64799 4.70792 4.74725 4.86095 4.91307 4.96089 5.00111 5.05001 5.13805 5.16682 5.24583 5.30825 5.49517 5.52961 5.58996 5.63771 5.76276 5.94958 6.32152 6.52387 6.99625 7.14034 7.40007 8.10247 8.36714 9.34577 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004643 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.524062 B = 6028.598787 C = 7178.765296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.172 3.828 5 H 0.045 0.955 6 C 0.122 3.878 7 N -0.705 5.705 8 C 0.523 3.477 9 O -0.572 6.572 10 C -0.151 4.151 11 H 0.145 0.855 12 C -0.108 4.108 13 C 0.104 3.896 14 N -0.620 5.620 15 C 0.091 3.909 16 C 0.514 3.486 17 O -0.561 6.561 18 N -0.726 5.726 19 C -0.216 4.216 20 H 0.075 0.925 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.958 3.042 24 H -0.293 1.293 25 H -0.299 1.299 26 H -0.271 1.271 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.373 0.627 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.110 6.759 -7.988 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.063 3.937 5 H 0.063 0.937 6 C -0.003 4.003 7 N -0.354 5.354 8 C 0.309 3.691 9 O -0.453 6.453 10 C -0.175 4.175 11 H 0.163 0.837 12 C -0.146 4.146 13 C -0.018 4.018 14 N -0.353 5.353 15 C -0.050 4.050 16 C 0.301 3.699 17 O -0.439 6.439 18 N -0.365 5.365 19 C -0.348 4.348 20 H 0.092 0.908 21 C -0.263 4.263 22 N -0.618 5.618 23 Si 0.789 3.211 24 H -0.221 1.221 25 H -0.226 1.226 26 H -0.197 1.197 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.205 0.795 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.900 7.430 -7.769 19.193 hybrid contribution -1.489 -1.044 -0.339 1.850 sum 14.412 6.386 -8.108 17.726 Atomic orbital electron populations 1.21728 0.95428 1.01799 1.00205 1.21606 0.96410 0.96263 0.98297 1.21849 1.00927 0.94945 1.02099 1.20665 0.90277 0.86212 0.96572 0.93687 1.21648 0.94588 0.95463 0.88574 1.46078 1.07127 1.52026 1.30181 1.20237 0.82264 0.80688 0.85905 1.90629 1.55753 1.50279 1.48640 1.22245 1.01608 1.02248 0.91411 0.83744 1.22642 0.89044 1.06333 0.96577 1.22459 0.87167 1.00693 0.91438 1.48341 1.12254 1.59621 1.15103 1.21750 1.04300 0.98826 0.80078 1.20686 0.84392 0.78352 0.86492 1.90762 1.22773 1.49748 1.80632 1.42506 1.17256 1.03304 1.73478 1.19448 0.93197 0.92194 1.29947 0.90757 1.25340 1.01407 0.96064 1.03490 1.69795 1.38376 0.99687 1.53921 0.85352 0.81139 0.77207 0.77391 1.22082 1.22615 1.19652 0.93142 0.92720 0.93885 0.92607 0.92693 0.91687 0.92297 0.90468 0.92411 0.75481 0.89543 0.86091 0.87114 0.88098 0.91538 0.92582 0.87458 0.79462 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.26 71.98 0.59 -4.31 16 2 C -0.10 -3.62 2.69 -10.79 -0.03 -3.65 16 3 C -0.14 -3.85 8.84 71.98 0.64 -3.22 16 4 C 0.17 6.76 2.18 44.99 0.10 6.86 16 5 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 6 C 0.12 4.44 4.73 86.38 0.41 4.84 16 7 N -0.70 -26.46 5.10 -463.09 -2.36 -28.83 16 8 C 0.52 18.05 7.14 87.66 0.63 18.67 16 9 O -0.57 -21.58 15.50 -3.02 -0.05 -21.63 16 10 C -0.15 -3.97 3.32 -11.54 -0.04 -4.01 16 11 H 0.15 3.51 8.14 -2.39 -0.02 3.49 16 12 C -0.11 -1.86 6.46 31.65 0.20 -1.66 16 13 C 0.10 1.24 7.35 86.83 0.64 1.88 16 14 N -0.62 -12.43 3.34 -842.55 -2.81 -15.24 16 15 C 0.09 1.40 10.96 127.77 1.40 2.80 16 16 C 0.51 15.09 7.45 87.86 0.65 15.74 16 17 O -0.56 -21.61 16.58 -3.04 -0.05 -21.66 16 18 N -0.73 -35.02 4.44 -322.92 -1.43 -36.45 16 19 C -0.22 -11.50 7.57 84.03 0.64 -10.86 16 20 H 0.07 3.88 7.39 -2.91 -0.02 3.86 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 23 Si 0.96 46.18 29.55 68.60 2.03 48.21 16 24 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.05 2.21 6.01 -2.39 -0.01 2.20 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.53 6.54 -2.39 -0.02 1.52 16 34 H 0.08 2.62 6.71 -2.39 -0.02 2.61 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.41 16.89 7.50 -92.70 -0.69 16.19 16 37 H 0.09 1.78 7.03 -2.39 -0.02 1.76 16 38 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 1.09 7.94 -2.39 -0.02 1.08 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.37 19.67 7.80 -92.71 -0.72 18.95 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -71.84 362.36 1.48 -70.36 By element: Atomic # 1 Polarization: 43.71 SS G_CDS: -0.42 Total: 43.29 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.30 Total: 19.58 kcal Atomic # 7 Polarization: -131.82 SS G_CDS: -6.33 Total: -138.15 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.10 Total: -43.28 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -71.84 1.48 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698975462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.680 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds