Wall clock time and date at job start Tue Mar 31 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 C 1.50699 * 110.44052 * 304.82516 * 3 2 1 5 5 O 1.21278 * 120.00449 * 125.17310 * 4 3 2 6 6 N 1.34777 * 119.99654 * 305.17684 * 4 3 2 7 7 C 1.46495 * 120.00155 * 174.90273 * 6 4 3 8 8 C 1.53005 * 109.47229 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.46807 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.46921 * 304.99914 * 9 8 7 11 11 C 1.53002 * 109.46543 * 184.99831 * 9 8 7 12 12 N 1.46499 * 109.47159 * 65.00199 * 9 8 7 13 13 C 1.36938 * 119.99628 * 204.99818 * 12 9 8 14 14 H 1.07997 * 120.00111 * 359.97438 * 13 12 9 15 15 C 1.38815 * 119.99661 * 180.02562 * 13 12 9 16 16 N 1.31622 * 120.00163 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99809 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47299 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.46994 * 300.00029 * 17 15 13 20 20 H 1.48502 * 109.47102 * 59.99744 * 17 15 13 21 21 C 1.54638 * 110.48446 * 67.36663 * 3 2 1 22 22 C 1.54475 * 101.76742 * 94.01297 * 21 3 2 23 23 N 1.46764 * 105.47347 * 25.41517 * 22 21 3 24 24 C 1.34652 * 111.33750 * 342.87165 * 23 22 21 25 25 O 1.21279 * 125.07366 * 180.51901 * 24 23 22 26 26 H 1.09006 * 109.47078 * 55.09615 * 1 2 3 27 27 H 1.08999 * 109.46896 * 175.09590 * 1 2 3 28 28 H 1.08993 * 109.47387 * 295.09828 * 1 2 3 29 29 H 1.09005 * 109.47456 * 240.00646 * 2 1 3 30 30 H 1.08989 * 109.47466 * 120.00212 * 2 1 3 31 31 H 0.97001 * 120.00282 * 354.90022 * 6 4 3 32 32 H 1.09003 * 109.47253 * 59.99935 * 7 6 4 33 33 H 1.08999 * 109.47266 * 300.00256 * 7 6 4 34 34 H 1.08997 * 109.47003 * 60.00347 * 8 7 6 35 35 H 1.09002 * 109.47062 * 299.99619 * 8 7 6 36 36 H 1.08993 * 109.47580 * 299.99679 * 11 9 8 37 37 H 1.08997 * 109.47008 * 60.00220 * 11 9 8 38 38 H 1.09002 * 109.46678 * 179.97438 * 11 9 8 39 39 H 0.97000 * 120.00595 * 24.99862 * 12 9 8 40 40 H 0.96996 * 119.99905 * 0.02562 * 16 15 13 41 41 H 1.09003 * 110.96716 * 212.13509 * 21 3 2 42 42 H 1.08996 * 110.96520 * 335.85124 * 21 3 2 43 43 H 1.09000 * 110.24661 * 144.41734 * 22 21 3 44 44 H 1.09008 * 110.24147 * 266.41964 * 22 21 3 45 45 H 0.97003 * 124.34957 * 162.98670 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4551 2.2075 -1.1592 5 8 0.8580 3.2445 -0.9620 6 7 1.5955 1.7391 -2.4151 7 6 0.9332 2.4212 -3.5296 8 6 1.2532 1.6924 -4.8363 9 6 0.5620 2.4053 -6.0004 10 1 -0.5059 2.4828 -5.7962 11 6 0.7786 1.6074 -7.2878 12 7 1.1281 3.7474 -6.1565 13 6 0.3866 4.7395 -6.7406 14 1 -0.6153 4.5324 -7.0865 15 6 0.9232 6.0111 -6.8890 16 7 2.1445 6.2633 -6.4679 17 14 -0.0879 7.3643 -7.6864 18 1 0.7063 8.6184 -7.7250 19 1 -0.4481 6.9631 -9.0701 20 1 -1.3262 7.5872 -6.8975 21 6 1.6948 2.1385 1.3370 22 6 2.9837 1.9049 2.1558 23 7 4.0528 1.7388 1.1641 24 6 3.5515 1.4698 -0.0563 25 8 4.2129 1.2786 -1.0547 26 1 -0.3633 0.5881 -0.8428 27 1 -0.3633 -1.0239 -0.0879 28 1 -0.3634 0.4359 0.9306 29 1 1.8934 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.1352 0.9503 -2.5811 32 1 1.2906 3.4492 -3.5905 33 1 -0.1446 2.4204 -3.3673 34 1 0.8961 0.6644 -4.7758 35 1 2.3311 1.6938 -4.9985 36 1 1.8464 1.5299 -7.4919 37 1 0.3574 0.6088 -7.1716 38 1 0.2858 2.1150 -8.1170 39 1 2.0281 3.9333 -5.8462 40 1 2.6697 5.5606 -6.0542 41 1 1.5151 3.2032 1.1875 42 1 0.8374 1.6636 1.8140 43 1 3.1887 2.7669 2.7907 44 1 2.8876 1.0037 2.7614 45 1 4.9995 1.8116 1.3625 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700324772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:00 Heat of formation + Delta-G solvation = -74.788926 kcal Electronic energy + Delta-G solvation = -25005.150785 eV Core-core repulsion = 21443.276954 eV Total energy + Delta-G solvation = -3561.873831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46519 -38.92657 -36.94806 -36.50222 -34.71658 -34.21435 -32.36446 -30.08729 -29.28558 -28.19744 -27.59305 -23.88662 -23.69024 -23.03887 -21.67908 -21.58734 -20.21652 -19.18007 -17.81220 -17.35342 -16.87915 -16.51971 -15.90309 -15.26720 -14.96938 -14.76769 -14.49906 -14.39299 -13.81382 -13.79134 -13.66410 -13.50351 -13.24759 -12.79985 -12.56427 -12.38250 -12.24874 -12.05013 -12.03134 -11.48928 -11.38233 -11.15579 -11.00845 -10.84972 -10.63515 -10.49965 -10.18605 -10.07142 -9.90051 -9.68135 -9.45965 -9.07982 -8.87679 -8.77804 -6.95663 -6.01175 -3.00920 2.14245 2.62503 3.01908 3.31809 3.57116 3.61406 3.78528 3.87725 4.06244 4.36721 4.55946 4.67966 4.74778 4.86320 4.92371 5.02193 5.15439 5.28718 5.32128 5.36477 5.48549 5.58692 5.61984 5.69600 5.73425 5.79288 5.82162 5.96932 6.06067 6.14664 6.33635 6.37300 6.39790 6.46028 6.61150 6.62937 6.69786 6.85549 7.04738 7.63455 7.88971 7.89095 8.30334 8.84228 9.31325 10.17768 10.32676 11.47143 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.003549 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.409323 B = 7888.616481 C = 8360.107224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C -0.118 4.118 4 C 0.534 3.466 5 O -0.531 6.531 6 N -0.715 5.715 7 C 0.123 3.877 8 C -0.134 4.134 9 C 0.180 3.820 10 H 0.050 0.950 11 C -0.163 4.163 12 N -0.735 5.735 13 C -0.329 4.329 14 H 0.064 0.936 15 C -0.045 4.045 16 N -0.944 5.944 17 Si 1.079 2.921 18 H -0.286 1.286 19 H -0.296 1.296 20 H -0.295 1.295 21 C -0.120 4.120 22 C 0.101 3.899 23 N -0.729 5.729 24 C 0.533 3.467 25 O -0.515 6.515 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.401 0.599 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.366 0.634 40 H 0.255 0.745 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 -16.372 19.385 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.125 4.125 4 C 0.317 3.683 5 O -0.407 6.407 6 N -0.365 5.365 7 C 0.001 3.999 8 C -0.173 4.173 9 C 0.070 3.930 10 H 0.068 0.932 11 C -0.223 4.223 12 N -0.378 5.378 13 C -0.461 4.461 14 H 0.082 0.918 15 C -0.243 4.243 16 N -0.589 5.589 17 Si 0.910 3.090 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.223 1.223 21 C -0.157 4.157 22 C -0.023 4.023 23 N -0.385 5.385 24 C 0.317 3.683 25 O -0.389 6.389 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.236 0.764 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.200 0.800 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.762 -14.139 18.406 23.222 hybrid contribution 0.990 -1.952 0.564 2.260 sum 0.228 -16.091 18.970 24.876 Atomic orbital electron populations 1.21853 0.94066 1.02464 1.02887 1.21393 0.97292 0.91353 1.03597 1.21762 0.94565 0.99053 0.97149 1.19554 0.80209 0.84949 0.83589 1.90733 1.42585 1.22804 1.84607 1.46035 1.51658 1.32205 1.06599 1.21444 0.96938 0.97698 0.83842 1.22083 1.01729 0.98866 0.94598 1.20081 0.96356 0.85677 0.90874 0.93220 1.22405 1.00929 0.98269 1.00675 1.42472 1.16298 1.05767 1.73293 1.20017 0.98375 0.91984 1.35676 0.91830 1.25727 0.98812 0.97983 1.01740 1.70869 1.09714 1.35315 1.43035 0.83260 0.74304 0.76093 0.75348 1.21118 1.22386 1.22299 1.22750 0.97437 1.03799 0.91756 1.22149 0.86642 1.02208 0.91348 1.46150 1.09837 1.72914 1.09621 1.20383 0.89327 0.75413 0.83194 1.90797 1.65641 1.49078 1.33380 0.92005 0.91717 0.91936 0.90580 0.90401 0.76409 0.90095 0.91703 0.91746 0.91604 0.93639 0.94456 0.92682 0.80014 0.93405 0.87813 0.88355 0.89718 0.90756 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C -0.10 -0.81 4.86 -26.73 -0.13 -0.94 16 3 C -0.12 -1.31 0.49 -155.67 -0.08 -1.38 16 4 C 0.53 8.26 4.99 -10.99 -0.05 8.20 16 5 O -0.53 -10.21 15.48 5.56 0.09 -10.12 16 6 N -0.71 -10.85 5.23 -60.29 -0.32 -11.17 16 7 C 0.12 2.19 5.57 -4.04 -0.02 2.17 16 8 C -0.13 -2.21 4.87 -26.73 -0.13 -2.34 16 9 C 0.18 3.64 2.89 -67.93 -0.20 3.44 16 10 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 11 C -0.16 -3.00 9.49 37.16 0.35 -2.64 16 12 N -0.73 -18.74 4.57 -53.42 -0.24 -18.98 16 13 C -0.33 -9.47 9.93 -15.06 -0.15 -9.62 16 14 H 0.06 1.80 7.83 -52.49 -0.41 1.38 16 15 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 16 N -0.94 -30.21 13.70 55.49 0.76 -29.45 16 17 Si 1.08 26.81 29.92 -169.99 -5.09 21.73 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.12 -1.02 5.88 -25.10 -0.15 -1.17 16 22 C 0.10 0.60 7.78 -3.12 -0.02 0.58 16 23 N -0.73 -6.27 6.25 -59.14 -0.37 -6.64 16 24 C 0.53 6.59 7.19 -10.75 -0.08 6.52 16 25 O -0.51 -8.25 17.25 5.56 0.10 -8.15 16 26 H 0.06 0.64 6.95 -51.93 -0.36 0.28 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.44 6.69 -51.93 -0.35 0.09 16 29 H 0.08 0.65 7.63 -51.93 -0.40 0.25 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.40 5.39 7.44 -40.82 -0.30 5.09 16 32 H 0.08 1.79 7.75 -51.93 -0.40 1.38 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.37 9.80 6.63 -40.82 -0.27 9.53 16 40 H 0.25 8.09 6.77 -40.82 -0.28 7.82 16 41 H 0.10 1.14 6.96 -51.93 -0.36 0.78 16 42 H 0.10 0.62 6.38 -51.93 -0.33 0.29 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 45 H 0.41 2.87 8.96 -40.82 -0.37 2.50 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -36.64 362.13 -7.28 -43.92 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.27 Total: 12.93 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.40 Total: 0.48 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.17 Total: -66.24 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 26.81 SS G_CDS: -5.09 Total: 21.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.64 -7.28 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700324772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.868 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds