Wall clock time and date at job start Tue Mar 31 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48502 * 109.46738 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47601 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.46936 * 60.00378 * 3 2 1 7 7 C 1.38811 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99769 * 197.01127 * 7 2 1 9 9 N 1.36934 * 120.00010 * 17.00595 * 7 2 1 10 10 C 1.47083 * 120.88160 * 206.57459 * 9 7 2 11 11 C 1.53236 * 108.52330 * 231.21108 * 10 9 7 12 12 N 1.46900 * 109.33677 * 306.16556 * 11 10 9 13 13 C 1.46903 * 110.99810 * 187.25348 * 12 11 10 14 14 C 1.53000 * 109.46931 * 170.00576 * 13 12 11 15 15 N 1.46504 * 109.46912 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99528 * 179.97438 * 15 14 13 17 17 O 1.21274 * 120.00320 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99482 * 179.97438 * 16 15 14 19 19 H 1.08999 * 109.87156 * 56.01026 * 18 16 15 20 20 C 1.54102 * 109.88171 * 295.00175 * 18 16 15 21 21 C 1.54813 * 104.30370 * 238.33135 * 20 18 16 22 22 C 1.55228 * 101.98538 * 339.25859 * 21 20 18 23 23 O 1.43748 * 110.00238 * 177.09287 * 18 16 15 24 24 C 1.46902 * 111.26652 * 63.10992 * 12 11 10 25 25 C 1.47081 * 120.88444 * 26.60137 * 9 7 2 26 26 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62987 * 111.49521 * 10 9 7 28 28 H 1.09006 * 109.62458 * 350.92240 * 10 9 7 29 29 H 1.09002 * 109.49349 * 186.21076 * 11 10 9 30 30 H 1.09003 * 109.49375 * 66.12821 * 11 10 9 31 31 H 1.08998 * 109.47101 * 50.00003 * 13 12 11 32 32 H 1.09010 * 109.47135 * 290.00149 * 13 12 11 33 33 H 1.08993 * 109.47389 * 60.00168 * 14 13 12 34 34 H 1.08997 * 109.47029 * 299.99413 * 14 13 12 35 35 H 0.96997 * 119.99862 * 359.97438 * 15 14 13 36 36 H 1.09002 * 110.48880 * 357.07090 * 20 18 16 37 37 H 1.08999 * 110.49051 * 119.58854 * 20 18 16 38 38 H 1.08998 * 110.90587 * 97.38254 * 21 20 18 39 39 H 1.09000 * 110.90380 * 220.98572 * 21 20 18 40 40 H 1.08995 * 110.51921 * 278.38443 * 22 21 20 41 41 H 1.09001 * 110.64015 * 155.43688 * 22 21 20 42 42 H 1.09001 * 109.49710 * 56.85002 * 24 12 11 43 43 H 1.08997 * 109.49056 * 176.93152 * 24 12 11 44 44 H 1.08997 * 109.62568 * 248.50301 * 25 9 7 45 45 H 1.08997 * 109.62430 * 9.07890 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3619 -0.3479 10 6 1.8309 -3.6611 0.1654 11 6 2.0030 -4.6189 -1.0182 12 7 0.7557 -4.6640 -1.7929 13 6 0.8199 -5.6980 -2.8344 14 6 -0.5674 -5.8874 -3.4512 15 7 -0.5034 -6.9190 -4.4895 16 6 -1.6147 -7.2565 -5.1733 17 8 -2.6675 -6.7060 -4.9295 18 6 -1.5488 -8.3173 -6.2418 19 1 -1.1488 -9.2407 -5.8229 20 6 -0.6550 -7.8378 -7.4019 21 6 -1.5807 -7.8833 -8.6419 22 6 -2.6893 -8.8671 -8.1807 23 8 -2.8599 -8.5534 -6.7818 24 6 0.4409 -3.3515 -2.3728 25 6 0.2047 -2.3417 -1.2447 26 1 -0.4850 0.8401 0.0004 27 1 1.0918 -4.0640 0.8581 28 1 2.7854 -3.5353 0.6765 29 1 2.2372 -5.6169 -0.6476 30 1 2.8145 -4.2675 -1.6555 31 1 1.1530 -6.6375 -2.3936 32 1 1.5229 -5.3905 -3.6088 33 1 -0.9004 -4.9479 -3.8921 34 1 -1.2703 -6.1949 -2.6770 35 1 0.3386 -7.3590 -4.6848 36 1 -0.3089 -6.8200 -7.2214 37 1 0.1926 -8.5103 -7.5337 38 1 -1.9979 -6.8985 -8.8523 39 1 -1.0490 -8.2726 -9.5102 40 1 -2.3607 -9.8988 -8.3055 41 1 -3.6140 -8.6887 -8.7295 42 1 1.2741 -3.0177 -2.9912 43 1 -0.4578 -3.4302 -2.9845 44 1 -0.6906 -2.6177 -0.6876 45 1 0.0842 -1.3436 -1.6658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752359894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:03 Heat of formation + Delta-G solvation = -45.787237 kcal Electronic energy + Delta-G solvation = -24262.117664 eV Core-core repulsion = 20701.501441 eV Total energy + Delta-G solvation = -3560.616223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.53523 -38.76060 -38.05693 -35.41671 -34.02180 -32.55312 -31.51488 -30.36365 -29.94682 -28.50658 -25.92939 -24.02217 -23.13555 -22.55927 -22.14040 -21.34871 -20.54235 -19.11806 -17.81172 -16.93881 -16.81815 -16.41275 -15.66277 -15.32676 -15.08210 -14.84910 -14.37309 -14.29914 -14.08422 -13.80427 -13.60070 -13.43307 -13.40958 -12.93957 -12.55597 -12.21630 -12.07489 -11.69847 -11.64808 -11.43740 -11.39305 -11.26626 -11.06244 -10.75802 -10.46060 -10.42936 -10.30904 -10.05638 -9.75416 -9.70629 -9.58203 -9.12018 -8.50844 -7.89972 -6.66572 -5.77313 -3.18736 2.46051 2.70037 3.37401 3.45084 3.47197 3.63772 4.04528 4.27844 4.37637 4.46726 4.51614 4.58932 4.75277 4.91661 4.98422 5.14790 5.15912 5.25100 5.32951 5.40126 5.42148 5.45109 5.49819 5.59706 5.81467 5.89511 5.94636 6.05387 6.09957 6.19358 6.28057 6.32188 6.40931 6.53588 6.68255 6.92105 7.23704 7.32133 7.53669 7.63649 7.69708 7.81792 8.09519 8.44009 9.21736 9.85182 10.43646 11.31531 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.208581 B =10815.543374 C =11152.067312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.046 3.954 14 C 0.121 3.879 15 N -0.727 5.727 16 C 0.510 3.490 17 O -0.516 6.516 18 C 0.061 3.939 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.154 4.154 22 C 0.044 3.956 23 O -0.347 6.347 24 C 0.031 3.969 25 C 0.178 3.822 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -19.236 -16.214 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.083 4.083 14 C -0.002 4.002 15 N -0.382 5.382 16 C 0.294 3.706 17 O -0.390 6.390 18 C -0.001 4.001 19 H 0.112 0.888 20 C -0.187 4.187 21 C -0.192 4.192 22 C -0.033 4.033 23 O -0.265 6.265 24 C -0.098 4.098 25 C 0.052 3.948 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.125 -18.763 -15.559 24.376 hybrid contribution 1.718 0.814 -0.779 2.055 sum 1.843 -17.949 -16.338 24.341 Atomic orbital electron populations 1.70040 1.05198 1.25398 1.54026 1.25038 0.95316 0.98381 1.01070 0.86230 0.79266 0.84022 0.77295 1.20343 1.21591 1.21692 1.19224 0.92572 0.84779 1.41585 0.91605 1.44141 1.34176 1.01257 1.52361 1.20982 0.97845 0.86498 0.92542 1.22627 0.89252 0.99517 0.96900 1.61872 1.34675 1.05805 1.23106 1.22192 0.94942 0.96966 0.94235 1.21401 0.98180 0.90869 0.89731 1.45872 1.11300 1.41860 1.39117 1.20398 0.84042 0.83758 0.82373 1.90756 1.29242 1.53060 1.65901 1.22625 0.85735 0.97413 0.94280 0.88794 1.22960 0.98601 1.03436 0.93654 1.23189 0.96855 1.01295 0.97864 1.23691 0.99705 0.97895 0.82020 1.89031 1.24447 1.90146 1.22845 1.23007 0.98813 0.89189 0.98788 1.20868 0.89008 0.96585 0.88384 0.93626 0.95567 0.92545 0.91964 0.95359 0.90842 0.95008 0.91008 0.90329 0.76867 0.89777 0.89463 0.90075 0.89679 0.91804 0.88444 0.95606 0.91768 0.95422 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 11.15 55.49 0.62 -25.89 16 2 C 0.00 0.01 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.11 16 8 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 9 N -0.60 -15.19 3.04 -172.01 -0.52 -15.71 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 11 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.17 4.63 -234.31 -1.08 -10.25 16 13 C 0.05 0.59 5.08 -3.82 -0.02 0.57 16 14 C 0.12 1.62 5.61 -4.04 -0.02 1.59 16 15 N -0.73 -7.62 5.53 -60.29 -0.33 -7.95 16 16 C 0.51 6.53 6.95 -10.98 -0.08 6.45 16 17 O -0.52 -9.34 16.53 -13.94 -0.23 -9.57 16 18 C 0.06 0.57 3.84 -27.31 -0.10 0.46 16 19 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -0.95 6.60 -25.20 -0.17 -1.11 16 21 C -0.15 -0.94 7.17 -24.60 -0.18 -1.12 16 22 C 0.04 0.31 7.72 38.34 0.30 0.61 16 23 O -0.35 -4.08 10.75 -54.73 -0.59 -4.66 16 24 C 0.03 0.61 5.46 -3.70 -0.02 0.58 16 25 C 0.18 4.34 5.42 -3.60 -0.02 4.32 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 29 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 32 H 0.03 0.39 8.13 -51.92 -0.42 -0.03 16 33 H 0.07 1.09 6.40 -51.93 -0.33 0.76 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.40 2.75 8.47 -40.82 -0.35 2.40 16 36 H 0.08 0.60 7.69 -51.93 -0.40 0.20 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 1.17 6.16 -51.93 -0.32 0.85 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -34.49 355.90 -9.97 -44.46 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.58 Total: -1.62 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.59 Total: 9.07 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -1.32 Total: -59.80 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.82 Total: -14.24 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.49 -9.97 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752359894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.325 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds