Wall clock time and date at job start Tue Mar 31 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48502 * 109.46738 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47601 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.46936 * 60.00378 * 3 2 1 7 7 C 1.38811 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99769 * 197.01127 * 7 2 1 9 9 N 1.36934 * 120.00010 * 17.00595 * 7 2 1 10 10 C 1.47083 * 120.88160 * 206.57459 * 9 7 2 11 11 C 1.53236 * 108.52330 * 231.21108 * 10 9 7 12 12 N 1.46900 * 109.33677 * 306.16556 * 11 10 9 13 13 C 1.46903 * 110.99810 * 187.25348 * 12 11 10 14 14 C 1.53000 * 109.46931 * 170.00576 * 13 12 11 15 15 N 1.46504 * 109.46912 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99528 * 179.97438 * 15 14 13 17 17 O 1.21274 * 120.00320 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99482 * 179.97438 * 16 15 14 19 19 H 1.08999 * 109.87156 * 56.01026 * 18 16 15 20 20 C 1.54102 * 109.88171 * 295.00175 * 18 16 15 21 21 C 1.54813 * 104.30370 * 238.33135 * 20 18 16 22 22 C 1.55228 * 101.98538 * 339.25859 * 21 20 18 23 23 O 1.43748 * 110.00238 * 177.09287 * 18 16 15 24 24 C 1.46902 * 111.26652 * 63.10992 * 12 11 10 25 25 C 1.47081 * 120.88444 * 26.60137 * 9 7 2 26 26 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62987 * 111.49521 * 10 9 7 28 28 H 1.09006 * 109.62458 * 350.92240 * 10 9 7 29 29 H 1.09002 * 109.49349 * 186.21076 * 11 10 9 30 30 H 1.09003 * 109.49375 * 66.12821 * 11 10 9 31 31 H 1.08998 * 109.47101 * 50.00003 * 13 12 11 32 32 H 1.09010 * 109.47135 * 290.00149 * 13 12 11 33 33 H 1.08993 * 109.47389 * 60.00168 * 14 13 12 34 34 H 1.08997 * 109.47029 * 299.99413 * 14 13 12 35 35 H 0.96997 * 119.99862 * 359.97438 * 15 14 13 36 36 H 1.09002 * 110.48880 * 357.07090 * 20 18 16 37 37 H 1.08999 * 110.49051 * 119.58854 * 20 18 16 38 38 H 1.08998 * 110.90587 * 97.38254 * 21 20 18 39 39 H 1.09000 * 110.90380 * 220.98572 * 21 20 18 40 40 H 1.08995 * 110.51921 * 278.38443 * 22 21 20 41 41 H 1.09001 * 110.64015 * 155.43688 * 22 21 20 42 42 H 1.09001 * 109.49710 * 56.85002 * 24 12 11 43 43 H 1.08997 * 109.49056 * 176.93152 * 24 12 11 44 44 H 1.08997 * 109.62568 * 248.50301 * 25 9 7 45 45 H 1.08997 * 109.62430 * 9.07890 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3619 -0.3479 10 6 1.8309 -3.6611 0.1654 11 6 2.0030 -4.6189 -1.0182 12 7 0.7557 -4.6640 -1.7929 13 6 0.8199 -5.6980 -2.8344 14 6 -0.5674 -5.8874 -3.4512 15 7 -0.5034 -6.9190 -4.4895 16 6 -1.6147 -7.2565 -5.1733 17 8 -2.6675 -6.7060 -4.9295 18 6 -1.5488 -8.3173 -6.2418 19 1 -1.1488 -9.2407 -5.8229 20 6 -0.6550 -7.8378 -7.4019 21 6 -1.5807 -7.8833 -8.6419 22 6 -2.6893 -8.8671 -8.1807 23 8 -2.8599 -8.5534 -6.7818 24 6 0.4409 -3.3515 -2.3728 25 6 0.2047 -2.3417 -1.2447 26 1 -0.4850 0.8401 0.0004 27 1 1.0918 -4.0640 0.8581 28 1 2.7854 -3.5353 0.6765 29 1 2.2372 -5.6169 -0.6476 30 1 2.8145 -4.2675 -1.6555 31 1 1.1530 -6.6375 -2.3936 32 1 1.5229 -5.3905 -3.6088 33 1 -0.9004 -4.9479 -3.8921 34 1 -1.2703 -6.1949 -2.6770 35 1 0.3386 -7.3590 -4.6848 36 1 -0.3089 -6.8200 -7.2214 37 1 0.1926 -8.5103 -7.5337 38 1 -1.9979 -6.8985 -8.8523 39 1 -1.0490 -8.2726 -9.5102 40 1 -2.3607 -9.8988 -8.3055 41 1 -3.6140 -8.6887 -8.7295 42 1 1.2741 -3.0177 -2.9912 43 1 -0.4578 -3.4302 -2.9845 44 1 -0.6906 -2.6177 -0.6876 45 1 0.0842 -1.3436 -1.6658 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752359894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:02 Heat of formation + Delta-G solvation = -72.047950 kcal Electronic energy + Delta-G solvation = -24263.256414 eV Core-core repulsion = 20701.501441 eV Total energy + Delta-G solvation = -3561.754973 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37820 -39.91039 -39.27360 -36.85359 -35.49431 -33.46146 -33.02036 -31.66269 -31.30139 -29.71126 -27.55184 -25.22128 -24.46532 -24.15519 -22.68935 -22.61275 -21.47249 -20.82747 -18.80233 -18.56502 -17.63789 -17.41874 -16.93994 -16.51244 -16.30915 -16.04139 -15.74226 -15.54555 -15.32157 -15.11567 -14.94869 -14.75334 -14.58095 -14.38923 -14.07888 -13.22260 -13.02412 -12.87130 -12.76253 -12.68425 -12.65210 -12.56345 -12.21231 -12.17999 -12.04155 -11.88795 -11.86354 -11.56595 -11.43017 -11.16801 -10.61115 -10.54288 -10.17430 -9.30582 -8.69977 -7.88564 -5.33644 1.45311 1.46582 1.50680 1.57627 1.81841 2.49913 2.93075 3.13296 3.27160 3.49378 3.66559 3.71717 3.85355 3.88785 4.02746 4.06946 4.27194 4.29241 4.34230 4.41555 4.45330 4.53964 4.64166 4.70324 4.72527 4.78047 4.81818 4.91001 4.91542 4.98633 4.99483 5.03789 5.13996 5.19704 5.31734 5.36738 5.60452 5.66213 5.79396 6.13179 6.22731 6.36193 6.50791 7.11668 7.19233 7.82856 8.37152 9.18581 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002588 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.208581 B =10815.543374 C =11152.067312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.140 3.860 11 C 0.059 3.941 12 N -0.545 5.545 13 C 0.056 3.944 14 C 0.129 3.871 15 N -0.706 5.706 16 C 0.503 3.497 17 O -0.581 6.581 18 C 0.062 3.938 19 H 0.127 0.873 20 C -0.143 4.143 21 C -0.153 4.153 22 C 0.036 3.964 23 O -0.391 6.391 24 C 0.050 3.950 25 C 0.185 3.815 26 H 0.249 0.751 27 H 0.014 0.986 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.420 0.580 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.025 0.975 43 H 0.073 0.927 44 H -0.006 1.006 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -21.687 -17.831 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.070 4.070 12 N -0.270 5.270 13 C -0.072 4.072 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.290 3.710 17 O -0.460 6.460 18 C 0.001 3.999 19 H 0.144 0.856 20 C -0.180 4.180 21 C -0.191 4.191 22 C -0.039 4.039 23 O -0.310 6.310 24 C -0.079 4.079 25 C 0.059 3.941 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.012 0.988 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.021 -21.277 -17.194 27.522 hybrid contribution 0.812 1.499 -0.241 1.722 sum 3.833 -19.778 -17.435 26.643 Atomic orbital electron populations 1.70213 1.06805 1.25784 1.55666 1.25854 0.96074 1.01712 1.01454 0.85168 0.78655 0.79665 0.76727 1.18794 1.21756 1.21975 1.19593 0.92960 0.85892 1.40659 0.91113 1.44435 1.34115 1.02378 1.52997 1.21187 0.97552 0.85470 0.94301 1.22472 0.89023 1.00317 0.95207 1.61742 1.35176 1.05252 1.24847 1.22184 0.94678 0.96666 0.93661 1.21126 0.98156 0.90571 0.89703 1.45625 1.11974 1.40784 1.37729 1.21270 0.83312 0.83771 0.82636 1.90726 1.31708 1.55561 1.67968 1.22834 0.85730 0.97213 0.94117 0.85599 1.23026 0.99066 1.03780 0.92172 1.23211 0.96679 1.00264 0.98915 1.23941 1.00408 0.99532 0.80060 1.88991 1.26283 1.90496 1.25227 1.22597 0.99263 0.89492 0.96544 1.20591 0.87855 0.96351 0.89331 0.94143 0.96799 0.91746 0.87968 0.95143 0.87659 0.93170 0.93403 0.92518 0.74216 0.90696 0.85636 0.91924 0.86763 0.89292 0.88483 0.95673 0.90916 0.98809 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 11.15 21.65 0.24 -57.05 16 2 C -0.06 -3.19 4.94 84.86 0.42 -2.78 16 3 Si 0.97 45.49 29.59 68.60 2.03 47.52 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.26 -14.58 9.63 84.03 0.81 -13.77 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 9 N -0.62 -31.82 3.04 -698.12 -2.12 -33.94 16 10 C 0.14 5.84 6.69 86.35 0.58 6.41 16 11 C 0.06 1.87 5.62 86.38 0.49 2.35 16 12 N -0.54 -17.89 4.63 -895.23 -4.15 -22.03 16 13 C 0.06 1.27 5.08 86.30 0.44 1.71 16 14 C 0.13 3.29 5.61 86.38 0.48 3.78 16 15 N -0.71 -13.35 5.53 -463.06 -2.56 -15.91 16 16 C 0.50 12.55 6.95 87.66 0.61 13.16 16 17 O -0.58 -21.87 16.53 15.63 0.26 -21.61 16 18 C 0.06 1.02 3.84 30.22 0.12 1.13 16 19 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 20 C -0.14 -1.36 6.60 31.59 0.21 -1.15 16 21 C -0.15 -1.51 7.17 31.98 0.23 -1.28 16 22 C 0.04 0.46 7.72 72.75 0.56 1.02 16 23 O -0.39 -8.92 10.75 -130.33 -1.40 -10.32 16 24 C 0.05 1.97 5.46 86.38 0.47 2.44 16 25 C 0.18 9.40 5.42 86.35 0.47 9.87 16 26 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 2.52 7.95 -2.38 -0.02 2.50 16 29 H 0.10 2.49 7.99 -2.39 -0.02 2.47 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.81 7.97 -2.39 -0.02 1.79 16 32 H 0.05 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.05 1.46 6.40 -2.39 -0.02 1.45 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.42 4.17 8.47 -92.71 -0.79 3.39 16 36 H 0.07 0.87 7.69 -2.39 -0.02 0.85 16 37 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 2.70 6.16 -2.39 -0.01 2.69 16 44 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.05 3.14 6.12 -2.39 -0.01 3.13 16 Total: -1.00 -80.30 355.90 -1.63 -81.93 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.19 Total: 8.50 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 5.88 Total: 22.91 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -8.58 Total: -128.93 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.14 Total: -31.93 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -80.30 -1.63 -81.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752359894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.878 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds