Wall clock time and date at job start Tue Mar 31 2020 03:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 C 1.53000 * 109.47386 * 120.00583 * 2 1 3 5 5 H 1.09000 * 109.46490 * 299.99811 * 4 2 1 6 6 C 1.52995 * 109.47114 * 179.97438 * 4 2 1 7 7 N 1.46507 * 109.46954 * 184.99559 * 6 4 2 8 8 C 1.34777 * 119.99836 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00091 * 0.02562 * 8 7 6 10 10 C 1.50696 * 119.99691 * 180.02562 * 8 7 6 11 11 C 1.52997 * 110.43795 * 59.29909 * 10 8 7 12 12 C 1.54628 * 110.48546 * 181.84148 * 10 8 7 13 13 C 1.54689 * 101.67300 * 94.09352 * 12 10 8 14 14 N 1.46763 * 105.53278 * 25.25780 * 13 12 10 15 15 C 1.34417 * 111.30289 * 343.07980 * 14 13 12 16 16 O 1.21284 * 124.94817 * 180.36868 * 15 14 13 17 17 N 1.46497 * 109.47147 * 59.99582 * 4 2 1 18 18 C 1.36945 * 119.99980 * 274.99992 * 17 4 2 19 19 H 1.08000 * 119.99695 * 0.02562 * 18 17 4 20 20 C 1.38809 * 120.00032 * 179.97438 * 18 17 4 21 21 N 1.31620 * 119.99996 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99976 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46608 * 89.99837 * 22 20 18 24 24 H 1.48493 * 109.47084 * 209.99762 * 22 20 18 25 25 H 1.48501 * 109.47114 * 330.00194 * 22 20 18 26 26 H 1.09000 * 109.46626 * 299.99992 * 1 2 3 27 27 H 1.08999 * 109.47329 * 59.99304 * 1 2 3 28 28 H 1.08990 * 109.47418 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46634 * 240.00045 * 2 1 3 30 30 H 1.09003 * 109.47031 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47218 * 300.00169 * 3 2 1 32 32 H 1.09000 * 109.46969 * 59.99878 * 3 2 1 33 33 H 1.09002 * 109.46806 * 65.00283 * 6 4 2 34 34 H 1.08994 * 109.47485 * 305.00069 * 6 4 2 35 35 H 0.96998 * 119.99798 * 0.02562 * 7 6 4 36 36 H 1.09002 * 109.47153 * 60.69901 * 11 10 8 37 37 H 1.09001 * 109.46832 * 300.70092 * 11 10 8 38 38 H 1.09004 * 109.47261 * 180.70073 * 11 10 8 39 39 H 1.09004 * 110.97063 * 212.13034 * 12 10 8 40 40 H 1.09000 * 110.97302 * 335.89336 * 12 10 8 41 41 H 1.09001 * 110.13891 * 266.28265 * 13 12 10 42 42 H 1.08999 * 110.29997 * 144.32005 * 13 12 10 43 43 H 0.97001 * 124.35182 * 163.10274 * 14 13 12 44 44 H 0.96996 * 120.00439 * 95.00485 * 17 4 2 45 45 H 0.97005 * 119.99640 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6767 -0.2075 2.1391 6 6 3.5700 -0.7219 1.2488 7 7 4.0584 -1.5142 2.3802 8 6 5.3834 -1.6555 2.5819 9 8 6.1716 -1.1263 1.8271 10 6 5.8857 -2.4709 3.7454 11 6 5.3737 -3.9095 3.6501 12 6 7.4310 -2.4486 3.7949 13 6 7.6960 -1.2797 4.7728 14 7 6.4943 -1.1878 5.6103 15 6 5.4606 -1.8432 5.0547 16 8 4.3490 -1.9208 5.5335 17 7 1.5517 -2.1025 1.2491 18 6 0.3101 -2.3898 1.7504 19 1 -0.3092 -1.5980 2.1454 20 6 -0.1529 -3.6984 1.7498 21 7 -1.3464 -3.9744 2.2312 22 14 0.9180 -5.0677 1.0659 23 1 1.7593 -5.6283 2.1538 24 1 0.0548 -6.1384 0.5060 25 1 1.7914 -4.5249 -0.0055 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.3018 1.3382 34 1 3.9330 -1.1563 0.3174 35 1 3.4280 -1.9371 2.9841 36 1 5.7371 -4.3642 2.7285 37 1 4.2837 -3.9079 3.6493 38 1 5.7356 -4.4814 4.5047 39 1 7.8222 -3.3852 4.1922 40 1 7.8499 -2.2390 2.8107 41 1 7.8413 -0.3524 4.2187 42 1 8.5696 -1.4926 5.3888 43 1 6.4513 -0.7145 6.4559 44 1 2.1077 -2.8136 0.8941 45 1 -1.6697 -4.8890 2.2311 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753838521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:36 Heat of formation + Delta-G solvation = -69.511328 kcal Electronic energy + Delta-G solvation = -25725.109543 eV Core-core repulsion = 22163.464566 eV Total energy + Delta-G solvation = -3561.644977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23671 -38.91236 -37.41266 -36.37242 -34.07667 -33.18309 -33.11072 -30.80245 -29.08858 -28.06995 -26.25677 -25.59861 -23.87803 -22.47935 -21.81417 -21.20229 -19.80142 -19.12555 -17.85286 -17.45189 -17.15725 -15.89172 -15.59571 -15.25202 -15.07364 -14.52567 -14.08471 -13.98540 -13.94371 -13.72508 -13.56089 -13.08789 -12.89114 -12.77328 -12.52374 -12.36974 -12.29188 -12.14651 -11.64055 -11.57105 -11.33981 -11.17573 -11.06553 -10.86522 -10.66080 -10.23465 -10.15130 -10.06681 -9.94981 -9.64513 -9.46351 -9.29980 -8.92183 -8.78381 -7.31027 -5.78046 -3.14113 2.27884 2.67643 3.13667 3.35209 3.38439 3.42315 3.45131 4.06138 4.20568 4.54149 4.57293 4.82084 4.88367 5.11844 5.15282 5.25025 5.28031 5.44284 5.55038 5.57938 5.59005 5.68299 5.69973 5.76943 5.82249 5.89787 6.05140 6.08188 6.18762 6.29836 6.39070 6.49621 6.55127 6.58719 6.61931 6.77541 6.81297 7.01711 7.35319 7.73048 7.97476 8.06427 8.32092 8.39946 9.17515 9.89634 10.08575 11.39676 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013755 B = 0.005603 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.133321 B = 4995.683201 C = 6102.986435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.174 3.826 5 H 0.063 0.937 6 C 0.109 3.891 7 N -0.705 5.705 8 C 0.531 3.469 9 O -0.544 6.544 10 C -0.119 4.119 11 C -0.133 4.133 12 C -0.117 4.117 13 C 0.101 3.899 14 N -0.730 5.730 15 C 0.529 3.471 16 O -0.507 6.507 17 N -0.745 5.745 18 C -0.240 4.240 19 H 0.095 0.905 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.877 3.123 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.278 1.278 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.416 0.584 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.412 0.588 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.579 5.620 2.622 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.064 3.936 5 H 0.081 0.919 6 C -0.015 4.015 7 N -0.357 5.357 8 C 0.315 3.685 9 O -0.422 6.422 10 C -0.126 4.126 11 C -0.191 4.191 12 C -0.155 4.155 13 C -0.024 4.024 14 N -0.387 5.387 15 C 0.313 3.687 16 O -0.381 6.381 17 N -0.388 5.388 18 C -0.369 4.369 19 H 0.113 0.887 20 C -0.188 4.188 21 N -0.577 5.577 22 Si 0.707 3.293 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.204 1.204 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.251 0.749 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.263 5.898 2.345 19.334 hybrid contribution 0.386 -1.044 0.119 1.120 sum 18.649 4.854 2.463 19.427 Atomic orbital electron populations 1.21822 0.94332 1.04293 0.99211 1.21698 0.97361 0.94483 0.99430 1.21938 1.00324 0.97241 1.01186 1.20533 0.89008 0.87262 0.96782 0.91891 1.21851 0.95887 0.95187 0.88543 1.46064 1.06637 1.52165 1.30796 1.19636 0.82971 0.80700 0.85221 1.90653 1.55449 1.48824 1.47314 1.21623 0.98613 0.98657 0.93732 1.21725 1.03229 0.90930 1.03181 1.22729 0.91870 0.98786 1.02071 1.22142 0.87563 0.99717 0.92940 1.46135 1.12447 1.55262 1.24848 1.20354 0.84398 0.78296 0.85642 1.90839 1.20617 1.59886 1.66744 1.42814 1.18583 1.02535 1.74874 1.19045 0.91380 0.94148 1.32371 0.88742 1.24641 0.96394 0.96823 1.00924 1.69691 1.17645 1.19101 1.51308 0.86669 0.80295 0.83254 0.79048 1.20984 1.21873 1.20382 0.93762 0.94975 0.89248 0.92000 0.93146 0.93396 0.93000 0.91118 0.91666 0.74590 0.90836 0.90327 0.91060 0.89272 0.87269 0.90589 0.89983 0.74911 0.80589 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.26 37.16 0.31 -2.25 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 3 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 4 C 0.17 3.18 2.18 -67.93 -0.15 3.03 16 5 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 6 C 0.11 1.80 4.73 -4.04 -0.02 1.78 16 7 N -0.71 -11.82 5.25 -60.29 -0.32 -12.14 16 8 C 0.53 8.32 6.55 -10.99 -0.07 8.25 16 9 O -0.54 -9.29 15.46 5.55 0.09 -9.20 16 10 C -0.12 -1.54 0.74 -155.67 -0.12 -1.66 16 11 C -0.13 -1.68 8.31 37.16 0.31 -1.37 16 12 C -0.12 -1.08 6.05 -24.99 -0.15 -1.23 16 13 C 0.10 0.80 7.79 -3.01 -0.02 0.78 16 14 N -0.73 -7.42 6.24 -59.09 -0.37 -7.79 16 15 C 0.53 7.45 7.13 -10.86 -0.08 7.37 16 16 O -0.51 -9.16 17.83 5.55 0.10 -9.06 16 17 N -0.75 -16.33 4.24 -53.43 -0.23 -16.56 16 18 C -0.24 -6.29 8.05 -15.06 -0.12 -6.42 16 19 H 0.09 2.68 7.62 -52.49 -0.40 2.28 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 22 Si 0.88 21.46 27.74 -169.99 -4.71 16.75 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.45 6.52 56.52 0.37 -6.09 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.97 6.01 -51.93 -0.31 1.65 16 29 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.09 6.71 -51.93 -0.35 0.74 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.42 7.60 7.54 -40.82 -0.31 7.29 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.19 7.59 -51.93 -0.39 0.79 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.63 7.91 -51.93 -0.41 0.22 16 40 H 0.11 1.08 6.93 -51.93 -0.36 0.72 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.41 3.41 8.96 -40.82 -0.37 3.04 16 44 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -32.31 357.58 -6.69 -39.00 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -7.29 Total: 16.60 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.12 Total: 4.62 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.14 Total: -64.09 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.31 -6.69 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753838521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.516 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds