Wall clock time and date at job start Tue Mar 31 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99437 * 2 1 4 4 H 1.48502 * 109.47155 * 269.99718 * 3 2 1 5 5 H 1.48497 * 109.47651 * 30.00107 * 3 2 1 6 6 H 1.48507 * 109.46942 * 150.00568 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99499 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99830 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.30993 * 120.00033 * 127.00514 * 11 10 9 13 13 C 1.50701 * 120.00239 * 7.55330 * 12 11 10 14 14 N 1.46505 * 109.47208 * 127.15517 * 13 12 11 15 15 C 1.34777 * 119.99844 * 180.02562 * 14 13 12 16 16 O 1.21272 * 120.00267 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99431 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.46570 * 180.02562 * 17 15 14 19 19 N 1.46902 * 109.46891 * 180.02562 * 18 17 15 20 20 C 1.47012 * 110.99693 * 293.63328 * 19 18 17 21 21 C 1.53104 * 109.25922 * 177.60893 * 20 19 18 22 22 O 1.43016 * 109.25457 * 56.84503 * 21 20 19 23 23 C 1.43008 * 113.74417 * 301.33272 * 22 21 20 24 24 C 1.47016 * 110.99941 * 170.00137 * 19 18 17 25 25 H 0.96993 * 120.00045 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99658 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47342 * 59.99751 * 10 9 7 28 28 H 1.09001 * 109.46574 * 299.99810 * 10 9 7 29 29 H 1.08005 * 120.00025 * 306.99670 * 11 10 9 30 30 H 1.08003 * 120.00438 * 187.55312 * 12 11 10 31 31 H 1.09001 * 109.47160 * 7.16138 * 13 12 11 32 32 H 1.08994 * 109.47394 * 247.15878 * 13 12 11 33 33 H 0.97003 * 119.99896 * 0.02562 * 14 13 12 34 34 H 1.08994 * 109.47394 * 300.00286 * 17 15 14 35 35 H 1.09002 * 109.46849 * 60.00886 * 17 15 14 36 36 H 1.09006 * 109.47267 * 299.99665 * 18 17 15 37 37 H 1.08994 * 109.47203 * 59.99909 * 18 17 15 38 38 H 1.09001 * 109.51145 * 297.54183 * 20 19 18 39 39 H 1.09004 * 109.50891 * 57.67425 * 20 19 18 40 40 H 1.08997 * 109.50288 * 296.91806 * 21 20 19 41 41 H 1.08994 * 109.54528 * 176.80681 * 21 20 19 42 42 H 1.09000 * 109.50788 * 298.73858 * 23 22 21 43 43 H 1.09000 * 109.54665 * 178.62933 * 23 22 21 44 44 H 1.09000 * 109.50507 * 302.32585 * 24 19 18 45 45 H 1.08998 * 109.50738 * 62.41295 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0791 -4.8022 -0.0012 12 6 1.1728 -5.7435 -0.9073 13 6 2.3550 -5.7753 -1.8413 14 7 2.9768 -7.1012 -1.7971 15 6 4.0592 -7.3635 -2.5562 16 8 4.5187 -6.5020 -3.2754 17 6 4.6984 -8.7275 -2.5111 18 6 5.8995 -8.7594 -3.4583 19 7 6.5222 -10.0891 -3.4149 20 6 7.1181 -10.3489 -2.0963 21 6 7.7017 -11.7642 -2.0758 22 8 8.6527 -11.8975 -3.1356 23 6 8.1061 -11.6519 -4.4341 24 6 7.5266 -10.2355 -4.4784 25 1 -0.4850 0.8400 0.0004 26 1 0.3558 -2.3880 -0.0005 27 1 2.6850 -3.7144 0.8894 28 1 2.6850 -3.7143 -0.8906 29 1 0.3000 -4.8471 0.7455 30 1 0.4029 -6.4969 -0.9850 31 1 3.0814 -5.0230 -1.5338 32 1 2.0213 -5.5642 -2.8572 33 1 2.6095 -7.7902 -1.2215 34 1 5.0316 -8.9393 -1.4951 35 1 3.9720 -9.4795 -2.8194 36 1 5.5666 -8.5475 -4.4745 37 1 6.6256 -8.0074 -3.1497 38 1 7.9110 -9.6255 -1.9062 39 1 6.3514 -10.2602 -1.3265 40 1 6.9004 -12.4903 -2.2125 41 1 8.1946 -11.9416 -1.1200 42 1 7.3165 -12.3748 -4.6393 43 1 8.8911 -11.7476 -5.1843 44 1 7.0581 -10.0641 -5.4475 45 1 8.3256 -9.5098 -4.3268 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754184881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:04 Heat of formation + Delta-G solvation = -42.575482 kcal Electronic energy + Delta-G solvation = -23075.042923 eV Core-core repulsion = 19514.565972 eV Total energy + Delta-G solvation = -3560.476951 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.19500 -39.53187 -36.76986 -36.22909 -34.52048 -32.90865 -31.91261 -31.41473 -30.39942 -27.74128 -26.27827 -24.86577 -24.47132 -22.79913 -22.49793 -20.81384 -20.37472 -18.73027 -17.53211 -16.94961 -16.60511 -16.36414 -16.28406 -16.01465 -15.49169 -15.32123 -15.19817 -14.64724 -14.39223 -14.20495 -13.72234 -13.46113 -13.24968 -13.07022 -12.78372 -12.62466 -12.51798 -12.33277 -11.88801 -11.80440 -11.70402 -11.25987 -10.96911 -10.92913 -10.81483 -10.44529 -10.11655 -10.04966 -9.99054 -9.78618 -9.19317 -9.03848 -8.84387 -8.61978 -6.93329 -5.77910 -3.07213 2.23022 2.58398 3.08016 3.43290 3.44287 3.49280 3.50890 3.60881 4.38879 4.48729 4.52547 4.60631 4.67442 4.72475 4.77287 4.87910 4.93130 5.04526 5.06602 5.18778 5.26361 5.28118 5.37059 5.42143 5.47064 5.55123 5.58940 5.64058 5.67885 5.87414 5.94926 6.23081 6.31364 6.49193 6.50091 6.52159 6.56372 6.70641 6.85324 7.12273 7.45809 7.69231 8.17472 8.40518 9.51894 10.07589 10.42972 11.44821 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.044942 B =13830.001634 C =14321.733322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.109 4.109 12 C -0.200 4.200 13 C 0.140 3.860 14 N -0.724 5.724 15 C 0.510 3.490 16 O -0.541 6.541 17 C -0.136 4.136 18 C 0.070 3.930 19 N -0.539 5.539 20 C 0.011 3.989 21 C 0.064 3.936 22 O -0.387 6.387 23 C 0.064 3.936 24 C 0.017 3.983 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.479 -27.795 -5.299 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.128 4.128 12 C -0.219 4.219 13 C 0.018 3.982 14 N -0.375 5.375 15 C 0.295 3.705 16 O -0.418 6.418 17 C -0.177 4.177 18 C -0.058 4.058 19 N -0.264 5.264 20 C -0.117 4.117 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.111 4.111 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.780 -27.419 -5.872 30.415 hybrid contribution 0.022 1.358 0.446 1.429 sum 11.802 -26.061 -5.426 29.119 Atomic orbital electron populations 1.69665 1.05129 1.25733 1.57604 1.24766 0.95580 0.97778 1.02865 0.86154 0.78625 0.83606 0.77597 1.21612 1.21720 1.20706 1.19244 0.91095 0.83981 1.42898 0.91071 1.42268 1.05902 0.99497 1.89525 1.20010 0.92996 0.84787 0.98729 1.23298 0.99066 0.94732 0.95751 1.22590 0.98850 1.02135 0.98337 1.20566 0.94059 0.84069 0.99546 1.46055 1.30631 1.15368 1.45450 1.20568 0.80290 0.89859 0.79771 1.90738 1.62726 1.48237 1.40118 1.21611 0.98890 0.95168 1.01989 1.21825 0.95006 0.88213 1.00727 1.62208 1.31068 1.29727 1.03414 1.22887 0.98877 0.97885 0.92077 1.22672 0.92462 0.95193 0.90988 1.87991 1.36490 1.90910 1.15164 1.22670 0.98625 0.94801 0.85196 1.22784 0.94269 0.97983 0.96056 0.93465 0.78154 0.95451 0.94688 0.86878 0.87051 0.89354 0.91113 0.76710 0.88985 0.88042 0.89614 0.93532 0.93662 0.89294 0.92198 0.88409 0.92194 0.88394 0.89358 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.83 5.59 -61.09 -0.34 -19.17 16 10 C 0.16 3.29 6.35 -5.19 -0.03 3.26 16 11 C -0.11 -1.75 9.63 -36.02 -0.35 -2.10 16 12 C -0.20 -2.66 9.63 -36.02 -0.35 -3.01 16 13 C 0.14 1.96 5.76 -5.19 -0.03 1.93 16 14 N -0.72 -7.88 5.55 -61.47 -0.34 -8.22 16 15 C 0.51 6.10 7.83 -10.98 -0.09 6.02 16 16 O -0.54 -8.98 15.98 5.56 0.09 -8.90 16 17 C -0.14 -1.09 5.64 -27.88 -0.16 -1.24 16 18 C 0.07 0.64 4.25 -3.82 -0.02 0.62 16 19 N -0.54 -4.26 4.73 -234.30 -1.11 -5.36 16 20 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 21 C 0.06 0.42 7.01 37.21 0.26 0.68 16 22 O -0.39 -3.36 10.83 -35.23 -0.38 -3.74 16 23 C 0.06 0.43 7.01 37.21 0.26 0.69 16 24 C 0.02 0.13 5.65 -3.71 -0.02 0.11 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.38 10.40 7.66 -40.82 -0.31 10.08 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.73 5.29 -51.93 -0.27 0.46 16 29 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 31 H 0.09 1.46 5.30 -51.93 -0.28 1.18 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 3.06 8.46 -40.82 -0.35 2.71 16 34 H 0.09 0.58 6.52 -51.93 -0.34 0.24 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.85 7.99 -51.93 -0.42 0.43 16 37 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.50 6.38 -51.93 -0.33 0.17 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -34.35 365.57 -8.98 -43.33 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.33 Total: 7.16 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.78 Total: -0.54 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -1.07 Total: -60.56 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.29 Total: -12.63 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.35 -8.98 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754184881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.754 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds