Wall clock time and date at job start Tue Mar 31 2020 03:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99437 * 2 1 4 4 H 1.48502 * 109.47155 * 269.99718 * 3 2 1 5 5 H 1.48497 * 109.47651 * 30.00107 * 3 2 1 6 6 H 1.48507 * 109.46942 * 150.00568 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99499 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99830 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.30993 * 120.00033 * 127.00514 * 11 10 9 13 13 C 1.50701 * 120.00239 * 7.55330 * 12 11 10 14 14 N 1.46505 * 109.47208 * 127.15517 * 13 12 11 15 15 C 1.34777 * 119.99844 * 180.02562 * 14 13 12 16 16 O 1.21272 * 120.00267 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99431 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.46570 * 180.02562 * 17 15 14 19 19 N 1.46902 * 109.46891 * 180.02562 * 18 17 15 20 20 C 1.47012 * 110.99693 * 293.63328 * 19 18 17 21 21 C 1.53104 * 109.25922 * 177.60893 * 20 19 18 22 22 O 1.43016 * 109.25457 * 56.84503 * 21 20 19 23 23 C 1.43008 * 113.74417 * 301.33272 * 22 21 20 24 24 C 1.47016 * 110.99941 * 170.00137 * 19 18 17 25 25 H 0.96993 * 120.00045 * 359.97438 * 1 2 3 26 26 H 0.96995 * 119.99658 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47342 * 59.99751 * 10 9 7 28 28 H 1.09001 * 109.46574 * 299.99810 * 10 9 7 29 29 H 1.08005 * 120.00025 * 306.99670 * 11 10 9 30 30 H 1.08003 * 120.00438 * 187.55312 * 12 11 10 31 31 H 1.09001 * 109.47160 * 7.16138 * 13 12 11 32 32 H 1.08994 * 109.47394 * 247.15878 * 13 12 11 33 33 H 0.97003 * 119.99896 * 0.02562 * 14 13 12 34 34 H 1.08994 * 109.47394 * 300.00286 * 17 15 14 35 35 H 1.09002 * 109.46849 * 60.00886 * 17 15 14 36 36 H 1.09006 * 109.47267 * 299.99665 * 18 17 15 37 37 H 1.08994 * 109.47203 * 59.99909 * 18 17 15 38 38 H 1.09001 * 109.51145 * 297.54183 * 20 19 18 39 39 H 1.09004 * 109.50891 * 57.67425 * 20 19 18 40 40 H 1.08997 * 109.50288 * 296.91806 * 21 20 19 41 41 H 1.08994 * 109.54528 * 176.80681 * 21 20 19 42 42 H 1.09000 * 109.50788 * 298.73858 * 23 22 21 43 43 H 1.09000 * 109.54665 * 178.62933 * 23 22 21 44 44 H 1.09000 * 109.50507 * 302.32585 * 24 19 18 45 45 H 1.08998 * 109.50738 * 62.41295 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0791 -4.8022 -0.0012 12 6 1.1728 -5.7435 -0.9073 13 6 2.3550 -5.7753 -1.8413 14 7 2.9768 -7.1012 -1.7971 15 6 4.0592 -7.3635 -2.5562 16 8 4.5187 -6.5020 -3.2754 17 6 4.6984 -8.7275 -2.5111 18 6 5.8995 -8.7594 -3.4583 19 7 6.5222 -10.0891 -3.4149 20 6 7.1181 -10.3489 -2.0963 21 6 7.7017 -11.7642 -2.0758 22 8 8.6527 -11.8975 -3.1356 23 6 8.1061 -11.6519 -4.4341 24 6 7.5266 -10.2355 -4.4784 25 1 -0.4850 0.8400 0.0004 26 1 0.3558 -2.3880 -0.0005 27 1 2.6850 -3.7144 0.8894 28 1 2.6850 -3.7143 -0.8906 29 1 0.3000 -4.8471 0.7455 30 1 0.4029 -6.4969 -0.9850 31 1 3.0814 -5.0230 -1.5338 32 1 2.0213 -5.5642 -2.8572 33 1 2.6095 -7.7902 -1.2215 34 1 5.0316 -8.9393 -1.4951 35 1 3.9720 -9.4795 -2.8194 36 1 5.5666 -8.5475 -4.4745 37 1 6.6256 -8.0074 -3.1497 38 1 7.9110 -9.6255 -1.9062 39 1 6.3514 -10.2602 -1.3265 40 1 6.9004 -12.4903 -2.2125 41 1 8.1946 -11.9416 -1.1200 42 1 7.3165 -12.3748 -4.6393 43 1 8.8911 -11.7476 -5.1843 44 1 7.0581 -10.0641 -5.4475 45 1 8.3256 -9.5098 -4.3268 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754184881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:03 Heat of formation + Delta-G solvation = -69.901449 kcal Electronic energy + Delta-G solvation = -23076.227866 eV Core-core repulsion = 19514.565972 eV Total energy + Delta-G solvation = -3561.661894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.00498 -40.31163 -38.04374 -37.00117 -36.08992 -34.42918 -32.75823 -32.23779 -31.91381 -28.66875 -27.56556 -26.29877 -25.01490 -24.41716 -23.56205 -21.49404 -21.24658 -20.08491 -19.02508 -18.15788 -17.57596 -17.22898 -17.08507 -16.79262 -16.59984 -16.18652 -16.03703 -15.88899 -15.42570 -15.34890 -15.07147 -14.93279 -14.52408 -14.20884 -13.95879 -13.76304 -13.32926 -13.27875 -13.01958 -12.92502 -12.75479 -12.48917 -12.31725 -12.19128 -11.92472 -11.88037 -11.67313 -11.47264 -11.08341 -11.00690 -10.67322 -10.32946 -9.92371 -9.49776 -9.01449 -7.99637 -5.29227 1.04616 1.45004 1.47107 1.55584 1.63243 2.23631 2.54141 2.82106 2.98953 3.33614 3.73894 3.79342 3.87801 3.93594 4.04146 4.11110 4.12885 4.16144 4.20978 4.32635 4.35028 4.38011 4.50373 4.59861 4.64581 4.74726 4.82326 4.84130 4.86563 4.89669 4.90072 4.95524 5.03646 5.08036 5.39401 5.43709 5.57954 5.84338 5.85660 5.89602 6.19223 6.23149 6.58006 7.27450 7.29034 8.02776 8.27565 9.23624 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.002024 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.044942 B =13830.001634 C =14321.733322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.160 3.840 11 C -0.136 4.136 12 C -0.157 4.157 13 C 0.140 3.860 14 N -0.708 5.708 15 C 0.506 3.494 16 O -0.594 6.594 17 C -0.121 4.121 18 C 0.074 3.926 19 N -0.535 5.535 20 C 0.009 3.991 21 C 0.062 3.938 22 O -0.409 6.409 23 C 0.065 3.935 24 C 0.014 3.986 25 H 0.253 0.747 26 H 0.376 0.624 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.419 0.581 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.023 0.977 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.478 -30.041 -4.970 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.383 4.383 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.155 4.155 12 C -0.176 4.176 13 C 0.016 3.984 14 N -0.361 5.361 15 C 0.294 3.706 16 O -0.475 6.475 17 C -0.161 4.161 18 C -0.054 4.054 19 N -0.260 5.260 20 C -0.119 4.119 21 C -0.015 4.015 22 O -0.329 6.329 23 C -0.012 4.012 24 C -0.114 4.114 25 H 0.062 0.938 26 H 0.208 0.792 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.143 0.857 30 H 0.170 0.830 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.795 -29.734 -5.514 32.460 hybrid contribution 0.082 1.941 0.290 1.964 sum 11.878 -27.793 -5.224 30.673 Atomic orbital electron populations 1.69811 1.06531 1.26260 1.59100 1.25611 0.96530 1.01185 1.03375 0.85113 0.77715 0.79259 0.77502 1.21391 1.21684 1.19481 1.19625 0.91451 0.85385 1.41823 0.90927 1.42477 1.05703 1.00784 1.89459 1.20085 0.93801 0.84474 0.98144 1.23037 0.99510 0.94614 0.98388 1.22800 0.98245 1.01273 0.95300 1.20345 0.93892 0.85141 0.99008 1.45849 1.30213 1.14570 1.45464 1.21302 0.79878 0.90798 0.78615 1.90725 1.64182 1.50194 1.42364 1.21563 0.98558 0.92868 1.03112 1.21716 0.95060 0.88338 1.00335 1.62264 1.31263 1.28427 1.04053 1.22980 0.99025 0.97895 0.92003 1.22815 0.92588 0.94890 0.91173 1.87962 1.37756 1.90993 1.16140 1.22766 0.99267 0.94216 0.84938 1.22850 0.93887 0.98271 0.96376 0.93814 0.79205 0.95813 0.95107 0.85723 0.83049 0.92260 0.92195 0.74296 0.86537 0.85414 0.90844 0.95901 0.95167 0.87421 0.91308 0.87002 0.91438 0.87080 0.88605 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 2 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 3 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -39.00 5.59 -347.18 -1.94 -40.94 16 10 C 0.16 6.61 6.35 85.63 0.54 7.15 16 11 C -0.14 -4.19 9.63 25.65 0.25 -3.95 16 12 C -0.16 -3.78 9.63 25.65 0.25 -3.53 16 13 C 0.14 3.76 5.76 85.63 0.49 4.25 16 14 N -0.71 -13.84 5.55 -466.78 -2.59 -16.43 16 15 C 0.51 11.48 7.83 87.66 0.69 12.17 16 16 O -0.59 -20.02 15.98 -3.01 -0.05 -20.07 16 17 C -0.12 -1.63 5.64 29.85 0.17 -1.47 16 18 C 0.07 1.29 4.25 86.30 0.37 1.65 16 19 N -0.53 -7.70 4.73 -895.18 -4.23 -11.93 16 20 C 0.01 0.11 5.44 86.32 0.47 0.58 16 21 C 0.06 0.70 7.01 72.02 0.50 1.20 16 22 O -0.41 -6.57 10.83 -148.98 -1.61 -8.19 16 23 C 0.06 0.78 7.01 72.02 0.50 1.29 16 24 C 0.01 0.20 5.65 86.31 0.49 0.69 16 25 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.38 20.71 7.66 -92.71 -0.71 20.00 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 1.32 5.29 -2.39 -0.01 1.30 16 29 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.06 1.98 5.30 -2.39 -0.01 1.97 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.42 4.83 8.46 -92.71 -0.78 4.05 16 34 H 0.12 1.05 6.52 -2.39 -0.02 1.04 16 35 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.45 7.99 -2.38 -0.02 1.43 16 37 H 0.02 0.50 8.08 -2.39 -0.02 0.48 16 38 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.11 0.89 6.38 -2.38 -0.02 0.87 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.16 8.09 -2.39 -0.02 1.14 16 45 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -76.14 365.57 -2.59 -78.74 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.50 Total: 26.92 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 6.02 Total: 2.40 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -8.48 Total: -129.00 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.66 Total: -28.25 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.14 -2.59 -78.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754184881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.836 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds