Wall clock time and date at job start Tue Mar 31 2020 03:32:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.47517 * 2 1
4 4 C 1.52997 * 109.47260 * 120.00282 * 2 1 3
5 5 C 1.50703 * 109.47084 * 64.99711 * 4 2 1
6 6 O 1.21278 * 119.99985 * 0.02562 * 5 4 2
7 7 N 1.34779 * 119.99944 * 180.02562 * 5 4 2
8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4
9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5
10 10 H 1.08996 * 112.95911 * 74.66662 * 9 8 7
11 11 C 1.53941 * 113.75462 * 206.31130 * 9 8 7
12 12 C 1.53944 * 86.34063 * 138.03655 * 11 9 8
13 13 N 1.47966 * 113.75601 * 303.01422 * 9 8 7
14 14 C 1.46894 * 110.99463 * 108.10575 * 13 9 8
15 15 C 1.50701 * 109.47283 * 169.99760 * 14 13 9
16 16 O 1.21301 * 119.99409 * 359.97438 * 15 14 13
17 17 N 1.34772 * 120.00339 * 179.97438 * 15 14 13
18 18 C 1.37101 * 119.99950 * 179.97438 * 17 15 14
19 19 H 1.08003 * 119.99998 * 0.02562 * 18 17 15
20 20 C 1.38950 * 119.99832 * 179.97438 * 18 17 15
21 21 N 1.31407 * 120.00424 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99859 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.46968 * 0.02562 * 22 20 18
24 24 H 1.48495 * 109.47198 * 120.00138 * 22 20 18
25 25 H 1.48500 * 109.46918 * 240.00621 * 22 20 18
26 26 H 1.09000 * 109.47102 * 300.00018 * 1 2 3
27 27 H 1.09004 * 109.47094 * 59.99767 * 1 2 3
28 28 H 1.09001 * 109.47254 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47090 * 240.00538 * 2 1 3
30 30 H 1.08994 * 109.47556 * 180.02562 * 3 2 1
31 31 H 1.09001 * 109.47332 * 300.00691 * 3 2 1
32 32 H 1.09000 * 109.46950 * 59.99889 * 3 2 1
33 33 H 1.09002 * 109.47045 * 304.99744 * 4 2 1
34 34 H 1.09001 * 109.47375 * 184.99669 * 4 2 1
35 35 H 0.97000 * 119.99708 * 359.97438 * 7 5 4
36 36 H 1.09002 * 109.47391 * 59.99686 * 8 7 5
37 37 H 1.09001 * 109.46813 * 299.99742 * 8 7 5
38 38 H 1.08996 * 113.73112 * 252.39145 * 11 9 8
39 39 H 1.09000 * 113.73797 * 23.68423 * 11 9 8
40 40 H 1.08999 * 113.75583 * 90.58891 * 12 11 9
41 41 H 1.09001 * 113.76129 * 221.85155 * 12 11 9
42 42 H 1.08996 * 109.47495 * 289.99379 * 14 13 9
43 43 H 1.09004 * 109.47680 * 50.00054 * 14 13 9
44 44 H 0.96995 * 120.00427 * 0.02562 * 17 15 14
45 45 H 0.96996 * 120.00694 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 -2.1734 1.1888
6 8 1.0116 -2.5903 0.2398
7 7 1.9844 -3.0086 2.1894
8 6 1.5973 -4.4203 2.1304
9 6 2.1062 -5.1412 3.3802
10 1 1.5255 -4.9067 4.2724
11 6 2.3439 -6.6480 3.1734
12 6 3.6347 -6.4561 3.9900
13 7 3.5690 -5.0348 3.5758
14 6 3.8863 -4.1422 4.6985
15 6 5.3538 -4.2476 5.0248
16 8 6.0652 -4.9933 4.3852
17 7 5.8757 -3.5133 6.0272
18 6 7.2106 -3.6096 6.3243
19 1 7.8441 -4.2736 5.7548
20 6 7.7488 -2.8521 7.3574
21 7 6.9782 -2.0438 8.0500
22 14 9.5679 -2.9827 7.7618
23 1 10.2110 -3.9548 6.8415
24 1 10.2074 -1.6522 7.6014
25 1 9.7313 -3.4449 9.1636
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 1.8933 -0.5137 -0.8900
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6768 1.9563 0.8900
33 1 1.6054 -0.2618 2.1369
34 1 3.1264 -0.6444 1.2951
35 1 2.4884 -2.6751 2.9481
36 1 2.0326 -4.8797 1.2429
37 1 0.5110 -4.4974 2.0838
38 1 1.6042 -7.2803 3.6643
39 1 2.5196 -6.9259 2.1341
40 1 3.5027 -6.6059 5.0616
41 1 4.4929 -6.9945 3.5879
42 1 3.6480 -3.1146 4.4243
43 1 3.2987 -4.4313 5.5699
44 1 5.3068 -2.9172 6.5389
45 1 7.3538 -1.5153 8.7714
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754468751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:32:47
Heat of formation + Delta-G solvation = -55.174497 kcal
Electronic energy + Delta-G solvation = -24259.832056 eV
Core-core repulsion = 20698.808771 eV
Total energy + Delta-G solvation = -3561.023285 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.37630 -39.50570 -37.75871 -35.80421 -34.42847 -33.94644 -31.42284 -30.69386
-29.41018 -27.28297 -27.14486 -25.80941 -23.73763 -23.19853 -20.98645 -20.04534
-19.47743 -19.29728 -17.95695 -17.24441 -16.28160 -16.16418 -15.68223 -15.55954
-15.08939 -14.60006 -14.59518 -14.08461 -13.93498 -13.88941 -13.74050 -13.43246
-12.91182 -12.45572 -12.38311 -12.28196 -12.04541 -11.84363 -11.69132 -11.52762
-11.36909 -11.23419 -11.11635 -10.96410 -10.80167 -10.79024 -10.62773 -10.38099
-10.26790 -9.68129 -9.56301 -9.00291 -8.72464 -8.28784 -8.01808 -6.46998
-3.87859 2.68752 3.12421 3.15825 3.23784 3.30839 3.81190 3.91612
4.16824 4.48759 4.63202 4.72897 4.75012 4.81084 4.92090 4.99964
5.17019 5.19880 5.35900 5.38845 5.41467 5.47639 5.49041 5.54617
5.56140 5.62852 5.70874 5.77143 5.79183 5.85761 5.89801 6.01983
6.03082 6.18712 6.23986 6.26970 6.30450 6.46249 6.60024 7.15612
7.50541 7.52676 8.00428 8.26376 8.55457 9.12936 9.48072 9.99574
10.70709
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.012973 B = 0.003541 C = 0.002899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2157.733847 B = 7906.156171 C = 9656.191397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.080 4.080
3 C -0.149 4.149
4 C -0.141 4.141
5 C 0.513 3.487
6 O -0.545 6.545
7 N -0.723 5.723
8 C 0.144 3.856
9 C 0.006 3.994
10 H 0.082 0.918
11 C -0.137 4.137
12 C 0.021 3.979
13 N -0.445 5.445
14 C 0.010 3.990
15 C 0.443 3.557
16 O -0.577 6.577
17 N -0.564 5.564
18 C -0.299 4.299
19 H 0.103 0.897
20 C 0.023 3.977
21 N -0.901 5.901
22 Si 0.929 3.071
23 H -0.268 1.268
24 H -0.281 1.281
25 H -0.281 1.281
26 H 0.046 0.954
27 H 0.050 0.950
28 H 0.074 0.926
29 H 0.077 0.923
30 H 0.056 0.944
31 H 0.056 0.944
32 H 0.055 0.945
33 H 0.092 0.908
34 H 0.095 0.905
35 H 0.401 0.599
36 H 0.073 0.927
37 H 0.068 0.932
38 H 0.072 0.928
39 H 0.092 0.908
40 H 0.066 0.934
41 H 0.096 0.904
42 H 0.083 0.917
43 H 0.055 0.945
44 H 0.391 0.609
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.889 1.588 -8.440 16.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.099 4.099
3 C -0.206 4.206
4 C -0.181 4.181
5 C 0.300 3.700
6 O -0.423 6.423
7 N -0.375 5.375
8 C 0.020 3.980
9 C -0.104 4.104
10 H 0.100 0.900
11 C -0.175 4.175
12 C -0.107 4.107
13 N -0.169 5.169
14 C -0.122 4.122
15 C 0.228 3.772
16 O -0.460 6.460
17 N -0.201 5.201
18 C -0.428 4.428
19 H 0.121 0.879
20 C -0.179 4.179
21 N -0.543 5.543
22 Si 0.756 3.244
23 H -0.192 1.192
24 H -0.207 1.207
25 H -0.207 1.207
26 H 0.065 0.935
27 H 0.069 0.931
28 H 0.093 0.907
29 H 0.095 0.905
30 H 0.075 0.925
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.110 0.890
34 H 0.114 0.886
35 H 0.236 0.764
36 H 0.091 0.909
37 H 0.086 0.914
38 H 0.091 0.909
39 H 0.111 0.889
40 H 0.085 0.915
41 H 0.114 0.886
42 H 0.101 0.899
43 H 0.073 0.927
44 H 0.224 0.776
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -13.372 1.159 -9.907 16.683
hybrid contribution 0.424 0.479 1.957 2.059
sum -12.949 1.638 -7.950 15.282
Atomic orbital electron populations
1.21958 0.94894 1.03273 1.00847 1.20843 0.96471 0.95312 0.97242
1.21871 1.01107 0.95801 1.01845 1.21804 1.03292 0.92109 1.00862
1.20707 0.78940 0.88392 0.81951 1.90641 1.40323 1.78213 1.33142
1.46007 1.57652 1.09776 1.24046 1.21233 0.98938 0.80380 0.97469
1.23847 0.91945 0.96588 0.98029 0.89968 1.23387 0.97949 0.94058
1.02098 1.23717 0.98154 0.90432 0.98439 1.68498 1.10490 1.04205
1.33658 1.22497 0.97264 0.98671 0.93797 1.19627 0.88419 0.85295
0.83854 1.90538 1.61225 1.41594 1.52647 1.41873 1.10046 1.38513
1.29638 1.19745 0.84460 1.23653 1.14961 0.87882 1.25256 1.00338
0.96048 0.96241 1.69608 1.36185 1.26609 1.21888 0.85810 0.82104
0.78206 0.78302 1.19204 1.20701 1.20748 0.93455 0.93118 0.90738
0.90473 0.92526 0.92520 0.92635 0.88975 0.88650 0.76386 0.90883
0.91373 0.90898 0.88915 0.91538 0.88610 0.89920 0.92690 0.77558
0.91894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.55 8.93 37.16 0.33 -1.21 16
2 C -0.08 -0.81 2.57 -90.62 -0.23 -1.04 16
3 C -0.15 -1.25 9.19 37.16 0.34 -0.90 16
4 C -0.14 -1.43 5.17 -27.88 -0.14 -1.57 16
5 C 0.51 6.58 7.55 -10.98 -0.08 6.49 16
6 O -0.55 -8.53 13.97 5.56 0.08 -8.45 16
7 N -0.72 -8.71 5.48 -60.29 -0.33 -9.04 16
8 C 0.14 1.70 5.82 -4.04 -0.02 1.67 16
9 C 0.01 0.07 3.43 -66.65 -0.23 -0.16 16
10 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16
11 C -0.14 -1.49 7.84 -25.78 -0.20 -1.69 16
12 C 0.02 0.31 6.77 -2.63 -0.02 0.29 16
13 N -0.45 -6.86 5.58 -231.10 -1.29 -8.15 16
14 C 0.01 0.16 5.09 -4.98 -0.03 0.14 16
15 C 0.44 10.06 7.59 -10.99 -0.08 9.98 16
16 O -0.58 -15.23 15.14 5.54 0.08 -15.15 16
17 N -0.56 -13.82 5.29 -10.96 -0.06 -13.87 16
18 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16
19 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16
20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16
21 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16
22 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16
23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16
25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
28 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16
29 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16
30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
35 H 0.40 4.56 6.49 -40.82 -0.26 4.29 16
36 H 0.07 0.97 7.88 -51.93 -0.41 0.56 16
37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16
40 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16
41 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16
42 H 0.08 1.19 6.52 -51.93 -0.34 0.86 16
43 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16
44 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16
45 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16
LS Contribution 365.25 15.07 5.50 5.50
Total: -1.00 -32.01 365.25 -8.33 -40.34
By element:
Atomic # 1 Polarization: 19.59 SS G_CDS: -7.41 Total: 12.18 kcal
Atomic # 6 Polarization: 4.81 SS G_CDS: -0.61 Total: 4.21 kcal
Atomic # 7 Polarization: -53.35 SS G_CDS: -0.95 Total: -54.30 kcal
Atomic # 8 Polarization: -23.76 SS G_CDS: 0.16 Total: -23.60 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -32.01 -8.33 -40.34 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754468751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.838 kcal
(2) G-P(sol) polarization free energy of solvation -32.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.843 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds