Wall clock time and date at job start Tue Mar 31 2020 03:32:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.47517 * 2 1
4 4 C 1.52997 * 109.47260 * 120.00282 * 2 1 3
5 5 C 1.50703 * 109.47084 * 64.99711 * 4 2 1
6 6 O 1.21278 * 119.99985 * 0.02562 * 5 4 2
7 7 N 1.34779 * 119.99944 * 180.02562 * 5 4 2
8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4
9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5
10 10 H 1.08996 * 112.95911 * 74.66662 * 9 8 7
11 11 C 1.53941 * 113.75462 * 206.31130 * 9 8 7
12 12 C 1.53944 * 86.34063 * 138.03655 * 11 9 8
13 13 N 1.47966 * 113.75601 * 303.01422 * 9 8 7
14 14 C 1.46894 * 110.99463 * 108.10575 * 13 9 8
15 15 C 1.50701 * 109.47283 * 169.99760 * 14 13 9
16 16 O 1.21301 * 119.99409 * 359.97438 * 15 14 13
17 17 N 1.34772 * 120.00339 * 179.97438 * 15 14 13
18 18 C 1.37101 * 119.99950 * 179.97438 * 17 15 14
19 19 H 1.08003 * 119.99998 * 0.02562 * 18 17 15
20 20 C 1.38950 * 119.99832 * 179.97438 * 18 17 15
21 21 N 1.31407 * 120.00424 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99859 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.46968 * 0.02562 * 22 20 18
24 24 H 1.48495 * 109.47198 * 120.00138 * 22 20 18
25 25 H 1.48500 * 109.46918 * 240.00621 * 22 20 18
26 26 H 1.09000 * 109.47102 * 300.00018 * 1 2 3
27 27 H 1.09004 * 109.47094 * 59.99767 * 1 2 3
28 28 H 1.09001 * 109.47254 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47090 * 240.00538 * 2 1 3
30 30 H 1.08994 * 109.47556 * 180.02562 * 3 2 1
31 31 H 1.09001 * 109.47332 * 300.00691 * 3 2 1
32 32 H 1.09000 * 109.46950 * 59.99889 * 3 2 1
33 33 H 1.09002 * 109.47045 * 304.99744 * 4 2 1
34 34 H 1.09001 * 109.47375 * 184.99669 * 4 2 1
35 35 H 0.97000 * 119.99708 * 359.97438 * 7 5 4
36 36 H 1.09002 * 109.47391 * 59.99686 * 8 7 5
37 37 H 1.09001 * 109.46813 * 299.99742 * 8 7 5
38 38 H 1.08996 * 113.73112 * 252.39145 * 11 9 8
39 39 H 1.09000 * 113.73797 * 23.68423 * 11 9 8
40 40 H 1.08999 * 113.75583 * 90.58891 * 12 11 9
41 41 H 1.09001 * 113.76129 * 221.85155 * 12 11 9
42 42 H 1.08996 * 109.47495 * 289.99379 * 14 13 9
43 43 H 1.09004 * 109.47680 * 50.00054 * 14 13 9
44 44 H 0.96995 * 120.00427 * 0.02562 * 17 15 14
45 45 H 0.96996 * 120.00694 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6413 -2.1734 1.1888
6 8 1.0116 -2.5903 0.2398
7 7 1.9844 -3.0086 2.1894
8 6 1.5973 -4.4203 2.1304
9 6 2.1062 -5.1412 3.3802
10 1 1.5255 -4.9067 4.2724
11 6 2.3439 -6.6480 3.1734
12 6 3.6347 -6.4561 3.9900
13 7 3.5690 -5.0348 3.5758
14 6 3.8863 -4.1422 4.6985
15 6 5.3538 -4.2476 5.0248
16 8 6.0652 -4.9933 4.3852
17 7 5.8757 -3.5133 6.0272
18 6 7.2106 -3.6096 6.3243
19 1 7.8441 -4.2736 5.7548
20 6 7.7488 -2.8521 7.3574
21 7 6.9782 -2.0438 8.0500
22 14 9.5679 -2.9827 7.7618
23 1 10.2110 -3.9548 6.8415
24 1 10.2074 -1.6522 7.6014
25 1 9.7313 -3.4449 9.1636
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 1.8933 -0.5137 -0.8900
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6768 1.9563 0.8900
33 1 1.6054 -0.2618 2.1369
34 1 3.1264 -0.6444 1.2951
35 1 2.4884 -2.6751 2.9481
36 1 2.0326 -4.8797 1.2429
37 1 0.5110 -4.4974 2.0838
38 1 1.6042 -7.2803 3.6643
39 1 2.5196 -6.9259 2.1341
40 1 3.5027 -6.6059 5.0616
41 1 4.4929 -6.9945 3.5879
42 1 3.6480 -3.1146 4.4243
43 1 3.2987 -4.4313 5.5699
44 1 5.3068 -2.9172 6.5389
45 1 7.3538 -1.5153 8.7714
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754468751.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:32:46
Heat of formation + Delta-G solvation = -79.509164 kcal
Electronic energy + Delta-G solvation = -24260.887286 eV
Core-core repulsion = 20698.808771 eV
Total energy + Delta-G solvation = -3562.078516 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.49182 -40.59778 -39.48254 -36.62966 -35.95723 -35.41183 -33.32782 -32.02501
-30.37244 -28.14156 -27.92269 -27.50787 -25.29812 -24.20020 -21.91581 -21.08165
-20.94580 -20.40689 -19.90713 -18.20263 -17.78646 -17.27185 -16.88261 -16.63972
-16.45178 -16.25070 -15.73445 -15.53691 -15.25837 -15.06196 -14.69881 -14.52966
-14.19659 -13.83300 -13.53932 -13.37002 -13.09004 -12.96321 -12.88764 -12.79143
-12.68745 -12.42805 -12.32882 -12.13252 -12.05427 -11.86138 -11.77075 -11.68631
-11.56572 -11.49862 -10.68984 -10.32920 -10.01254 -9.99748 -9.66842 -8.47211
-5.95330 1.35704 1.41724 1.55015 1.70508 2.04578 2.21624 2.29174
2.80086 3.19342 3.27627 3.60700 3.77219 3.79208 3.91621 4.03788
4.09854 4.20859 4.28688 4.36377 4.40536 4.44371 4.53163 4.65139
4.71086 4.73272 4.77567 4.86030 4.86993 4.91027 4.99198 5.05916
5.13593 5.22850 5.30443 5.35226 5.41347 5.45917 5.51825 5.60621
5.92276 6.10172 6.57348 6.60376 7.13313 7.29769 7.56354 8.12613
8.70184
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.012973 B = 0.003541 C = 0.002899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2157.733847 B = 7906.156171 C = 9656.191397
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.081 4.081
3 C -0.144 4.144
4 C -0.138 4.138
5 C 0.508 3.492
6 O -0.578 6.578
7 N -0.720 5.720
8 C 0.145 3.855
9 C 0.020 3.980
10 H 0.107 0.893
11 C -0.118 4.118
12 C 0.011 3.989
13 N -0.473 5.473
14 C 0.023 3.977
15 C 0.441 3.559
16 O -0.619 6.619
17 N -0.573 5.573
18 C -0.331 4.331
19 H 0.076 0.924
20 C -0.010 4.010
21 N -0.918 5.918
22 Si 0.989 3.011
23 H -0.276 1.276
24 H -0.271 1.271
25 H -0.271 1.271
26 H 0.060 0.940
27 H 0.056 0.944
28 H 0.050 0.950
29 H 0.056 0.944
30 H 0.057 0.943
31 H 0.061 0.939
32 H 0.065 0.935
33 H 0.114 0.886
34 H 0.101 0.899
35 H 0.405 0.595
36 H 0.054 0.946
37 H 0.081 0.919
38 H 0.103 0.897
39 H 0.092 0.908
40 H 0.068 0.932
41 H 0.064 0.936
42 H 0.107 0.893
43 H 0.080 0.920
44 H 0.397 0.603
45 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.101 2.507 -7.592 17.087
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.100 4.100
3 C -0.202 4.202
4 C -0.178 4.178
5 C 0.296 3.704
6 O -0.458 6.458
7 N -0.372 5.372
8 C 0.021 3.979
9 C -0.089 4.089
10 H 0.125 0.875
11 C -0.156 4.156
12 C -0.118 4.118
13 N -0.197 5.197
14 C -0.109 4.109
15 C 0.228 3.772
16 O -0.505 6.505
17 N -0.210 5.210
18 C -0.461 4.461
19 H 0.094 0.906
20 C -0.210 4.210
21 N -0.559 5.559
22 Si 0.813 3.187
23 H -0.200 1.200
24 H -0.196 1.196
25 H -0.196 1.196
26 H 0.079 0.921
27 H 0.075 0.925
28 H 0.069 0.931
29 H 0.074 0.926
30 H 0.076 0.924
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.132 0.868
34 H 0.119 0.881
35 H 0.241 0.759
36 H 0.073 0.927
37 H 0.099 0.901
38 H 0.122 0.878
39 H 0.110 0.890
40 H 0.087 0.913
41 H 0.083 0.917
42 H 0.125 0.875
43 H 0.098 0.902
44 H 0.231 0.769
45 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -14.604 2.092 -9.038 17.301
hybrid contribution 0.782 0.154 1.644 1.827
sum -13.822 2.246 -7.393 15.835
Atomic orbital electron populations
1.21902 0.94903 1.01970 1.01802 1.20836 0.96468 0.96254 0.96403
1.21832 1.01151 0.94524 1.02657 1.21856 1.03719 0.90388 1.01789
1.21192 0.78306 0.89448 0.81442 1.90631 1.41890 1.78957 1.34371
1.46027 1.57315 1.09838 1.23992 1.21231 0.99555 0.80220 0.96883
1.23879 0.89588 0.96789 0.98668 0.87491 1.23301 0.96316 0.94242
1.01703 1.23706 0.99010 0.90075 0.99010 1.68488 1.13590 1.04269
1.33340 1.22402 0.92502 1.00582 0.95409 1.20740 0.90916 0.83368
0.82185 1.90512 1.63238 1.42990 1.53740 1.41923 1.09344 1.39276
1.30498 1.19643 0.85856 1.24597 1.16016 0.90639 1.25960 1.04136
0.95322 0.95579 1.69655 1.37595 1.26655 1.22010 0.84931 0.77357
0.78282 0.78143 1.20042 1.19599 1.19605 0.92143 0.92526 0.93074
0.92558 0.92423 0.91972 0.91575 0.86790 0.88088 0.75869 0.92709
0.90052 0.87824 0.88951 0.91341 0.91703 0.87509 0.90179 0.76948
0.91303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.85 8.93 71.98 0.64 -2.21 16
2 C -0.08 -1.55 2.57 -10.79 -0.03 -1.57 16
3 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16
4 C -0.14 -2.58 5.17 29.85 0.15 -2.43 16
5 C 0.51 12.52 7.55 87.66 0.66 13.18 16
6 O -0.58 -18.03 13.97 -3.02 -0.04 -18.07 16
7 N -0.72 -16.11 5.48 -463.05 -2.54 -18.65 16
8 C 0.15 3.16 5.82 86.38 0.50 3.66 16
9 C 0.02 0.41 3.43 45.02 0.15 0.56 16
10 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16
11 C -0.12 -2.29 7.84 31.24 0.25 -2.05 16
12 C 0.01 0.31 6.77 86.36 0.59 0.89 16
13 N -0.47 -13.97 5.58 -885.06 -4.94 -18.91 16
14 C 0.02 0.71 5.09 85.56 0.44 1.14 16
15 C 0.44 20.12 7.59 87.66 0.67 20.79 16
16 O -0.62 -33.66 15.14 -3.09 -0.05 -33.70 16
17 N -0.57 -28.30 5.29 -306.98 -1.62 -29.93 16
18 C -0.33 -18.45 9.68 84.04 0.81 -17.64 16
19 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16
20 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16
21 N -0.92 -48.15 13.05 21.66 0.28 -47.86 16
22 Si 0.99 42.27 29.55 68.60 2.03 44.30 16
23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16
24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16
25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
27 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16
28 H 0.05 1.24 5.95 -2.39 -0.01 1.22 16
29 H 0.06 1.30 7.95 -2.39 -0.02 1.28 16
30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16
34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
35 H 0.41 8.27 6.49 -92.71 -0.60 7.67 16
36 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16
37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.09 1.83 7.92 -2.39 -0.02 1.81 16
40 H 0.07 1.89 7.78 -2.39 -0.02 1.87 16
41 H 0.06 2.22 8.10 -2.39 -0.02 2.20 16
42 H 0.11 2.81 6.52 -2.39 -0.02 2.80 16
43 H 0.08 2.13 7.69 -2.38 -0.02 2.11 16
44 H 0.40 18.40 7.90 -92.71 -0.73 17.66 16
45 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16
Total: -1.00 -70.94 365.25 -1.26 -72.19
By element:
Atomic # 1 Polarization: 38.20 SS G_CDS: -0.34 Total: 37.86 kcal
Atomic # 6 Polarization: 6.82 SS G_CDS: 5.96 Total: 12.78 kcal
Atomic # 7 Polarization: -106.54 SS G_CDS: -8.82 Total: -115.35 kcal
Atomic # 8 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.77 kcal
Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal
Total: -70.94 -1.26 -72.19 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754468751.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.315 kcal
(2) G-P(sol) polarization free energy of solvation -70.937 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.252 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds