Wall clock time and date at job start Tue Mar 31 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 C 1.53004 * 109.47167 * 119.99533 * 2 1 3 5 5 C 1.50695 * 109.47158 * 174.99722 * 4 2 1 6 6 O 1.21282 * 120.00383 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00024 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00092 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47064 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.78472 * 284.18945 * 9 8 7 11 11 C 1.53509 * 113.47430 * 153.38126 * 9 8 7 12 12 C 1.53517 * 83.57536 * 219.20766 * 11 9 8 13 13 N 1.47473 * 113.47472 * 55.00003 * 9 8 7 14 14 C 1.46895 * 111.00172 * 253.46865 * 13 9 8 15 15 C 1.50696 * 109.47426 * 198.37844 * 14 13 9 16 16 O 1.21296 * 120.00268 * 353.84405 * 15 14 13 17 17 N 1.34777 * 120.00158 * 173.84568 * 15 14 13 18 18 C 1.37097 * 120.00048 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00484 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99941 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00314 * 359.72754 * 20 18 17 22 22 Si 1.86802 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47235 * 90.00455 * 22 20 18 24 24 H 1.48510 * 109.47052 * 210.00205 * 22 20 18 25 25 H 1.48498 * 109.47106 * 330.00177 * 22 20 18 26 26 H 1.09004 * 109.46972 * 300.00618 * 1 2 3 27 27 H 1.09002 * 109.47042 * 60.00112 * 1 2 3 28 28 H 1.08992 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47226 * 239.99843 * 2 1 3 30 30 H 1.09001 * 109.47067 * 59.99745 * 3 2 1 31 31 H 1.09006 * 109.47320 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46939 * 299.99951 * 3 2 1 33 33 H 1.09007 * 109.46600 * 54.99756 * 4 2 1 34 34 H 1.09000 * 109.46991 * 295.00152 * 4 2 1 35 35 H 0.97004 * 119.99846 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.47442 * 60.00402 * 8 7 5 37 37 H 1.09000 * 109.47369 * 300.00065 * 8 7 5 38 38 H 1.09002 * 114.17215 * 105.55870 * 11 9 8 39 39 H 1.09003 * 114.34777 * 332.86478 * 11 9 8 40 40 H 1.08995 * 113.47564 * 271.26088 * 12 11 9 41 41 H 1.08998 * 113.52651 * 140.80095 * 12 11 9 42 42 H 1.09003 * 109.47044 * 78.37460 * 14 13 9 43 43 H 1.09004 * 109.46884 * 318.37771 * 14 13 9 44 44 H 0.97002 * 119.99888 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00558 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2404 7 7 4.2149 -1.4312 2.1896 8 6 5.6749 -1.5359 2.1312 9 6 6.1849 -2.2572 3.3805 10 1 6.1739 -1.6239 4.2676 11 6 7.5194 -2.9845 3.1647 12 6 6.8770 -4.0629 4.0485 13 7 5.5613 -3.5766 3.5928 14 6 4.6023 -3.5329 4.7047 15 6 4.3285 -4.9340 5.1873 16 8 4.7892 -5.8828 4.5882 17 7 3.5718 -5.1330 6.2847 18 6 3.3231 -6.4076 6.7241 19 1 3.7333 -7.2524 6.1906 20 6 2.5434 -6.6126 7.8557 21 7 2.0487 -5.5847 8.5079 22 14 2.2040 -8.3494 8.4540 23 1 3.2617 -8.7583 9.4127 24 1 0.8816 -8.3911 9.1285 25 1 2.1988 -9.2795 7.2964 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6052 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.7325 -1.7950 2.9485 36 1 6.1093 -0.5373 2.0851 37 1 5.9636 -2.0990 1.2437 38 1 8.3769 -2.4879 3.6188 39 1 7.6989 -3.2987 2.1365 40 1 7.0507 -3.9115 5.1138 41 1 7.0998 -5.0798 3.7254 42 1 3.6722 -3.0775 4.3646 43 1 5.0189 -2.9424 5.5207 44 1 3.2036 -4.3742 6.7640 45 1 1.5040 -5.7278 9.2977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754468752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:50 Heat of formation + Delta-G solvation = -52.407085 kcal Electronic energy + Delta-G solvation = -24254.326705 eV Core-core repulsion = 20693.423423 eV Total energy + Delta-G solvation = -3560.903281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55442 -39.57115 -37.79458 -35.81870 -34.43584 -33.96685 -31.45477 -30.75357 -29.41597 -27.27119 -27.13188 -25.86477 -23.79372 -23.06955 -20.99958 -20.05994 -19.57580 -19.30692 -17.97294 -17.26415 -16.29495 -16.18030 -15.71225 -15.57726 -15.04086 -14.61397 -14.58348 -14.09913 -13.96009 -13.89751 -13.76094 -13.43467 -12.92185 -12.46343 -12.38883 -12.28586 -12.04417 -11.86494 -11.71692 -11.54485 -11.40569 -11.24529 -11.12030 -10.97937 -10.82806 -10.80672 -10.52123 -10.43701 -10.27662 -9.68331 -9.56348 -9.01079 -8.76991 -8.34998 -8.03432 -6.48274 -3.89271 2.67591 3.12832 3.16619 3.22634 3.28415 3.80839 3.95682 4.17204 4.44169 4.61656 4.72688 4.75590 4.79521 4.91073 4.99738 5.16648 5.18409 5.35645 5.36412 5.40323 5.46930 5.48321 5.52742 5.54912 5.60272 5.72275 5.76009 5.80704 5.84797 5.88633 6.00770 6.05905 6.16815 6.22504 6.24537 6.29230 6.45641 6.57688 7.15497 7.49094 7.51693 7.98552 8.25318 8.53697 9.11249 9.46151 9.97504 10.69295 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003392 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.005867 B = 8252.497553 C = 9847.285196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.141 4.141 5 C 0.513 3.487 6 O -0.545 6.545 7 N -0.723 5.723 8 C 0.141 3.859 9 C 0.004 3.996 10 H 0.082 0.918 11 C -0.137 4.137 12 C 0.016 3.984 13 N -0.437 5.437 14 C 0.008 3.992 15 C 0.441 3.559 16 O -0.577 6.577 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 13.230 -9.543 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.181 4.181 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.375 5.375 8 C 0.017 3.983 9 C -0.107 4.107 10 H 0.100 0.900 11 C -0.175 4.175 12 C -0.113 4.113 13 N -0.160 5.160 14 C -0.125 4.125 15 C 0.226 3.774 16 O -0.460 6.460 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.407 12.562 -10.967 16.849 hybrid contribution -0.521 -0.182 2.027 2.100 sum 1.885 12.380 -8.941 15.387 Atomic orbital electron populations 1.21871 0.95011 1.01878 1.01859 1.20844 0.95017 0.96777 0.97231 1.21960 1.03096 0.95074 1.00856 1.21805 0.92093 1.03291 1.00878 1.20707 0.90189 0.77166 0.81975 1.90643 1.70518 1.47954 1.33186 1.46029 1.07975 1.59496 1.24017 1.21291 0.79818 0.99540 0.97620 1.23839 0.95681 0.93057 0.98075 0.90015 1.23209 0.95274 0.97239 1.01824 1.23540 0.89065 1.00732 0.97963 1.68898 1.06000 1.08956 1.32150 1.22550 0.98289 0.97851 0.93765 1.19619 0.84626 0.89556 0.83606 1.90541 1.54787 1.42771 1.57944 1.41873 1.44837 1.09135 1.24063 1.19696 1.29297 0.84778 1.09174 0.87914 1.25260 0.96688 0.99486 0.96400 1.69601 1.34817 1.30301 1.19512 0.85860 0.77655 0.81858 0.78956 1.20392 1.20868 1.19366 0.92637 0.92506 0.92544 0.90472 0.93448 0.90728 0.93113 0.88687 0.88970 0.76398 0.91437 0.90897 0.90567 0.88684 0.91596 0.88803 0.89673 0.92627 0.77531 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.19 37.15 0.34 -0.87 16 2 C -0.08 -0.79 2.57 -90.62 -0.23 -1.02 16 3 C -0.15 -1.53 8.93 37.16 0.33 -1.20 16 4 C -0.14 -1.39 5.17 -27.88 -0.14 -1.54 16 5 C 0.51 6.49 7.55 -10.99 -0.08 6.41 16 6 O -0.54 -8.46 13.96 5.56 0.08 -8.38 16 7 N -0.72 -8.63 5.46 -60.29 -0.33 -8.96 16 8 C 0.14 1.66 5.82 -4.04 -0.02 1.64 16 9 C 0.00 0.04 3.25 -71.44 -0.23 -0.19 16 10 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 11 C -0.14 -1.51 8.00 -26.20 -0.21 -1.72 16 12 C 0.02 0.23 6.34 -7.54 -0.05 0.19 16 13 N -0.44 -6.75 5.74 -237.95 -1.37 -8.11 16 14 C 0.01 0.13 5.09 -4.98 -0.03 0.10 16 15 C 0.44 9.98 7.46 -10.99 -0.08 9.90 16 16 O -0.58 -15.19 14.98 5.54 0.08 -15.11 16 17 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 18 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 22 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.91 5.95 -51.93 -0.31 0.60 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 4.50 6.33 -40.82 -0.26 4.24 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.95 7.88 -51.93 -0.41 0.55 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.03 7.94 -51.93 -0.41 0.61 16 40 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 41 H 0.09 1.59 7.97 -51.93 -0.41 1.18 16 42 H 0.09 1.23 6.56 -51.93 -0.34 0.89 16 43 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 44 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -31.85 364.17 -8.44 -40.29 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -7.39 Total: 12.21 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.65 Total: 3.91 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.03 Total: -54.04 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.16 Total: -23.49 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.85 -8.44 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754468752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.119 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds