Wall clock time and date at job start Tue Mar 31 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47386 * 2 1 4 4 C 1.53004 * 109.47167 * 119.99533 * 2 1 3 5 5 C 1.50695 * 109.47158 * 174.99722 * 4 2 1 6 6 O 1.21282 * 120.00383 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00024 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00092 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47064 * 180.02562 * 8 7 5 10 10 H 1.09001 * 112.78472 * 284.18945 * 9 8 7 11 11 C 1.53509 * 113.47430 * 153.38126 * 9 8 7 12 12 C 1.53517 * 83.57536 * 219.20766 * 11 9 8 13 13 N 1.47473 * 113.47472 * 55.00003 * 9 8 7 14 14 C 1.46895 * 111.00172 * 253.46865 * 13 9 8 15 15 C 1.50696 * 109.47426 * 198.37844 * 14 13 9 16 16 O 1.21296 * 120.00268 * 353.84405 * 15 14 13 17 17 N 1.34777 * 120.00158 * 173.84568 * 15 14 13 18 18 C 1.37097 * 120.00048 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00484 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99941 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00314 * 359.72754 * 20 18 17 22 22 Si 1.86802 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47235 * 90.00455 * 22 20 18 24 24 H 1.48510 * 109.47052 * 210.00205 * 22 20 18 25 25 H 1.48498 * 109.47106 * 330.00177 * 22 20 18 26 26 H 1.09004 * 109.46972 * 300.00618 * 1 2 3 27 27 H 1.09002 * 109.47042 * 60.00112 * 1 2 3 28 28 H 1.08992 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47226 * 239.99843 * 2 1 3 30 30 H 1.09001 * 109.47067 * 59.99745 * 3 2 1 31 31 H 1.09006 * 109.47320 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46939 * 299.99951 * 3 2 1 33 33 H 1.09007 * 109.46600 * 54.99756 * 4 2 1 34 34 H 1.09000 * 109.46991 * 295.00152 * 4 2 1 35 35 H 0.97004 * 119.99846 * 0.02562 * 7 5 4 36 36 H 1.08997 * 109.47442 * 60.00402 * 8 7 5 37 37 H 1.09000 * 109.47369 * 300.00065 * 8 7 5 38 38 H 1.09002 * 114.17215 * 105.55870 * 11 9 8 39 39 H 1.09003 * 114.34777 * 332.86478 * 11 9 8 40 40 H 1.08995 * 113.47564 * 271.26088 * 12 11 9 41 41 H 1.08998 * 113.52651 * 140.80095 * 12 11 9 42 42 H 1.09003 * 109.47044 * 78.37460 * 14 13 9 43 43 H 1.09004 * 109.46884 * 318.37771 * 14 13 9 44 44 H 0.97002 * 119.99888 * 359.97438 * 17 15 14 45 45 H 0.96996 * 120.00558 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.8294 1.1890 6 8 4.1450 -0.3741 0.2404 7 7 4.2149 -1.4312 2.1896 8 6 5.6749 -1.5359 2.1312 9 6 6.1849 -2.2572 3.3805 10 1 6.1739 -1.6239 4.2676 11 6 7.5194 -2.9845 3.1647 12 6 6.8770 -4.0629 4.0485 13 7 5.5613 -3.5766 3.5928 14 6 4.6023 -3.5329 4.7047 15 6 4.3285 -4.9340 5.1873 16 8 4.7892 -5.8828 4.5882 17 7 3.5718 -5.1330 6.2847 18 6 3.3231 -6.4076 6.7241 19 1 3.7333 -7.2524 6.1906 20 6 2.5434 -6.6126 7.8557 21 7 2.0487 -5.5847 8.5079 22 14 2.2040 -8.3494 8.4540 23 1 3.2617 -8.7583 9.4127 24 1 0.8816 -8.3911 9.1285 25 1 2.1988 -9.2795 7.2964 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6052 -1.7197 1.2953 34 1 1.7516 -0.1582 2.1370 35 1 3.7325 -1.7950 2.9485 36 1 6.1093 -0.5373 2.0851 37 1 5.9636 -2.0990 1.2437 38 1 8.3769 -2.4879 3.6188 39 1 7.6989 -3.2987 2.1365 40 1 7.0507 -3.9115 5.1138 41 1 7.0998 -5.0798 3.7254 42 1 3.6722 -3.0775 4.3646 43 1 5.0189 -2.9424 5.5207 44 1 3.2036 -4.3742 6.7640 45 1 1.5040 -5.7278 9.2977 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754468752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:49 Heat of formation + Delta-G solvation = -76.808731 kcal Electronic energy + Delta-G solvation = -24255.384840 eV Core-core repulsion = 20693.423423 eV Total energy + Delta-G solvation = -3561.961416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68401 -40.62542 -39.53510 -36.62820 -35.97132 -35.40920 -33.34500 -32.10013 -30.36330 -28.10066 -27.91940 -27.55067 -25.36374 -24.08544 -21.91924 -21.10501 -20.96403 -20.48083 -19.91605 -18.20816 -17.80383 -17.28979 -16.90865 -16.63989 -16.45963 -16.19419 -15.73013 -15.57054 -15.26141 -15.06586 -14.69669 -14.52695 -14.20085 -13.80233 -13.56800 -13.38602 -13.08927 -12.96581 -12.89672 -12.81625 -12.67671 -12.45389 -12.37274 -12.13912 -12.04843 -11.91109 -11.75768 -11.62555 -11.56255 -11.48038 -10.68005 -10.31933 -10.02723 -9.99800 -9.78186 -8.47874 -5.96164 1.36617 1.41428 1.53386 1.70918 2.02800 2.24098 2.28560 2.84230 3.18633 3.24878 3.56266 3.79027 3.80060 3.91718 4.03917 4.09646 4.17974 4.26770 4.35235 4.40510 4.43845 4.52999 4.64754 4.71085 4.73469 4.77716 4.86360 4.87194 4.90609 5.00151 5.06192 5.13827 5.19730 5.30745 5.32454 5.40525 5.45010 5.51918 5.60273 5.91243 6.09114 6.57693 6.59209 7.12131 7.30127 7.54855 8.10900 8.69270 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003392 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.005867 B = 8252.497553 C = 9847.285196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.138 4.138 5 C 0.508 3.492 6 O -0.578 6.578 7 N -0.720 5.720 8 C 0.143 3.857 9 C 0.017 3.983 10 H 0.105 0.895 11 C -0.117 4.117 12 C 0.006 3.994 13 N -0.463 5.463 14 C 0.020 3.980 15 C 0.439 3.561 16 O -0.619 6.619 17 N -0.571 5.571 18 C -0.333 4.333 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.989 3.011 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.275 1.275 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.405 0.595 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 14.651 -8.816 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.296 3.704 6 O -0.459 6.459 7 N -0.372 5.372 8 C 0.019 3.981 9 C -0.092 4.092 10 H 0.123 0.877 11 C -0.155 4.155 12 C -0.123 4.123 13 N -0.186 5.186 14 C -0.112 4.112 15 C 0.226 3.774 16 O -0.505 6.505 17 N -0.209 5.209 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.813 3.187 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.200 1.200 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.241 0.759 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.929 14.005 -10.221 17.445 hybrid contribution -0.331 -0.619 1.747 1.883 sum 1.598 13.386 -8.474 15.923 Atomic orbital electron populations 1.21830 0.93409 1.02277 1.02637 1.20838 0.96274 0.96419 0.96429 1.21906 1.01492 0.95435 1.01781 1.21859 0.90034 1.04089 1.01762 1.21204 0.91294 0.76480 0.81442 1.90633 1.71394 1.49405 1.34428 1.46046 1.08122 1.59061 1.23986 1.21274 0.79919 0.99902 0.96985 1.23851 0.95081 0.91591 0.98722 0.87700 1.23154 0.96010 0.95172 1.01189 1.23538 0.89885 1.00229 0.98657 1.68902 1.06216 1.11760 1.31765 1.22463 1.00084 0.93572 0.95031 1.20710 0.82605 0.91818 0.82230 1.90517 1.55895 1.45148 1.58921 1.41922 1.45654 1.08408 1.24910 1.19612 1.30920 0.85462 1.10250 0.90579 1.25966 0.95942 1.03097 0.95956 1.69650 1.34800 1.31695 1.19714 0.84985 0.78060 0.77449 0.78210 1.19703 1.19482 1.19970 0.91602 0.92003 0.92345 0.92523 0.92173 0.93095 0.92546 0.87949 0.86819 0.75865 0.90194 0.92581 0.87514 0.88656 0.91633 0.92098 0.87313 0.90036 0.76926 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 71.98 0.66 -1.41 16 2 C -0.08 -1.51 2.57 -10.79 -0.03 -1.53 16 3 C -0.15 -2.82 8.93 71.98 0.64 -2.18 16 4 C -0.14 -2.50 5.17 29.85 0.15 -2.34 16 5 C 0.51 12.30 7.55 87.65 0.66 12.96 16 6 O -0.58 -17.84 13.96 -3.04 -0.04 -17.88 16 7 N -0.72 -15.88 5.46 -463.06 -2.53 -18.41 16 8 C 0.14 3.10 5.82 86.38 0.50 3.60 16 9 C 0.02 0.35 3.25 42.19 0.14 0.49 16 10 H 0.11 1.76 7.63 -2.39 -0.02 1.74 16 11 C -0.12 -2.32 8.00 30.94 0.25 -2.07 16 12 C 0.01 0.17 6.34 83.58 0.53 0.70 16 13 N -0.46 -13.71 5.74 -906.73 -5.21 -18.92 16 14 C 0.02 0.63 5.09 85.56 0.44 1.06 16 15 C 0.44 19.98 7.46 87.66 0.65 20.64 16 16 O -0.62 -33.53 14.98 -3.08 -0.05 -33.58 16 17 N -0.57 -28.15 5.29 -306.98 -1.62 -29.77 16 18 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 19 H 0.08 4.55 7.16 -2.91 -0.02 4.53 16 20 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 21 N -0.92 -48.04 13.05 21.66 0.28 -47.75 16 22 Si 0.99 42.14 29.55 68.60 2.03 44.16 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.22 5.95 -2.38 -0.01 1.21 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.41 8.12 6.33 -92.71 -0.59 7.53 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.91 7.94 -2.39 -0.02 1.89 16 40 H 0.07 1.88 7.84 -2.39 -0.02 1.86 16 41 H 0.06 2.14 7.97 -2.39 -0.02 2.12 16 42 H 0.11 2.88 6.56 -2.39 -0.02 2.86 16 43 H 0.08 2.14 7.56 -2.38 -0.02 2.13 16 44 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 45 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -70.60 364.17 -1.58 -72.18 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.32 Total: 37.75 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.88 Total: 12.22 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -9.08 Total: -114.86 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.09 Total: -51.46 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -70.60 -1.58 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754468752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.626 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds