Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21286 * 120.00456 * 2 1 4 4 N 1.34778 * 120.00095 * 180.02562 * 2 1 3 5 5 C 1.46965 * 120.59776 * 180.02562 * 4 2 1 6 6 C 1.53373 * 108.63548 * 235.24778 * 5 4 2 7 7 N 1.46971 * 108.62793 * 310.57280 * 6 5 4 8 8 C 1.34777 * 120.58909 * 235.19967 * 7 6 5 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72975 * 8 7 6 11 11 N 1.46904 * 109.47192 * 180.28082 * 10 8 7 12 12 C 1.46900 * 111.00198 * 66.04220 * 11 10 8 13 13 C 1.46899 * 111.00061 * 189.99979 * 11 10 8 14 14 H 1.08999 * 109.47011 * 54.99753 * 13 11 10 15 15 C 1.52999 * 109.47209 * 294.99763 * 13 11 10 16 16 C 1.50695 * 109.47238 * 174.99436 * 13 11 10 17 17 H 1.08003 * 119.99916 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00189 * 179.97438 * 16 13 11 19 19 N 1.31511 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99955 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47257 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47321 * 120.00007 * 20 18 16 23 23 H 1.48503 * 109.47112 * 239.99897 * 20 18 16 24 24 C 1.46959 * 118.81572 * 55.48449 * 7 6 5 25 25 C 1.46966 * 120.59233 * 0.02562 * 4 2 1 26 26 H 1.08997 * 109.47189 * 239.99843 * 1 2 3 27 27 H 1.09001 * 109.46821 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47026 * 119.99301 * 1 2 3 29 29 H 1.09006 * 109.61234 * 115.49916 * 5 4 2 30 30 H 1.08997 * 109.60723 * 354.98638 * 5 4 2 31 31 H 1.08998 * 109.60934 * 190.83234 * 6 5 4 32 32 H 1.08993 * 109.75118 * 70.39769 * 6 5 4 33 33 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 34 34 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 35 35 H 1.08998 * 109.46551 * 60.00312 * 12 11 10 36 36 H 1.09003 * 109.47182 * 180.02562 * 12 11 10 37 37 H 1.08997 * 109.47165 * 300.00063 * 12 11 10 38 38 H 1.09002 * 109.47328 * 179.97438 * 15 13 11 39 39 H 1.08999 * 109.47125 * 299.99919 * 15 13 11 40 40 H 1.08998 * 109.47133 * 59.99709 * 15 13 11 41 41 H 0.97003 * 120.00374 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.61504 * 64.25941 * 24 7 6 43 43 H 1.08999 * 109.61399 * 184.77714 * 24 7 6 44 44 H 1.09000 * 109.61018 * 244.50325 * 25 4 2 45 45 H 1.09002 * 109.61040 * 4.83837 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6504 -1.1825 0.0000 6 6 4.1323 -2.0152 -1.1944 7 7 3.4106 -3.2955 -1.1959 8 6 4.0845 -4.4627 -1.1973 9 8 5.2974 -4.4628 -1.1969 10 6 3.3310 -5.7678 -1.1926 11 7 4.2856 -6.8844 -1.1884 12 6 5.0509 -6.9182 0.0650 13 6 3.6011 -8.1630 -1.4220 14 1 3.0272 -8.1043 -2.3468 15 6 2.6575 -8.4571 -0.2541 16 6 4.6217 -9.2662 -1.5333 17 1 5.6736 -9.0401 -1.4395 18 6 4.2125 -10.5642 -1.7539 19 7 2.9316 -10.8396 -1.8676 20 14 5.4776 -11.9317 -1.8912 21 1 6.8400 -11.3639 -1.7278 22 1 5.2322 -12.9415 -0.8303 23 1 5.3663 -12.5770 -3.2240 24 6 1.9411 -3.2803 -1.2021 25 6 1.4593 -2.4475 -0.0017 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5137 -0.8900 29 1 4.0113 -1.6290 0.9267 30 1 4.0269 -0.1635 -0.0889 31 1 5.2029 -2.1989 -1.1042 32 1 3.9299 -1.4801 -2.1221 33 1 2.7043 -5.8223 -0.3023 34 1 2.7044 -5.8288 -2.0823 35 1 4.3670 -7.0399 0.9050 36 1 5.7503 -7.7539 0.0413 37 1 5.6035 -5.9855 0.1785 38 1 2.1492 -9.4057 -0.4276 39 1 3.2313 -8.5159 0.6707 40 1 1.9193 -7.6592 -0.1736 41 1 2.6437 -11.7528 -2.0232 42 1 1.5838 -2.8318 -2.1291 43 1 1.5643 -4.2995 -1.1169 44 1 1.6643 -2.9838 0.9248 45 1 0.3884 -2.2638 -0.0886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161790721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = -42.433915 kcal Electronic energy + Delta-G solvation = -25058.279039 eV Core-core repulsion = 21497.808227 eV Total energy + Delta-G solvation = -3560.470812 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67984 -39.48378 -37.38433 -36.44224 -34.17897 -32.80409 -32.20426 -30.02582 -29.27408 -28.10927 -26.87628 -25.19837 -24.39987 -23.80484 -22.54946 -20.42187 -19.32481 -18.48705 -17.54001 -16.58595 -16.42204 -16.12308 -15.88826 -15.73213 -15.55833 -14.83541 -14.27074 -14.10647 -13.97766 -13.85260 -13.79893 -13.12619 -12.94951 -12.72071 -12.61145 -12.45390 -12.39725 -11.86784 -11.82132 -11.62286 -11.53019 -11.08449 -10.94120 -10.81162 -10.77132 -10.48349 -10.15246 -10.09204 -9.99322 -9.44330 -9.33604 -8.88741 -8.50206 -8.41354 -7.17182 -6.04022 -4.06652 2.28167 2.49787 2.87434 3.01433 3.29827 3.37849 3.43907 4.16856 4.37921 4.43105 4.47308 4.77574 4.79916 4.82718 4.92412 4.95272 5.05632 5.08088 5.17729 5.28941 5.33675 5.43920 5.49362 5.55106 5.67007 5.73913 5.75830 6.09528 6.27976 6.39409 6.45282 6.62995 6.76084 6.96506 7.00677 7.03805 7.31493 7.45104 7.66655 7.81161 7.81607 8.05662 8.33045 8.41045 8.56416 9.00040 9.58528 11.03477 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003073 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.105349 B = 9109.983653 C = 9603.608486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.614 5.614 5 C 0.098 3.902 6 C 0.100 3.900 7 N -0.625 5.625 8 C 0.518 3.482 9 O -0.514 6.514 10 C 0.039 3.961 11 N -0.518 5.518 12 C 0.031 3.969 13 C 0.211 3.789 14 H 0.040 0.960 15 C -0.173 4.173 16 C -0.497 4.497 17 H 0.065 0.935 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.284 1.284 24 C 0.094 3.906 25 C 0.091 3.909 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.009 0.991 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.031 0.969 40 H 0.005 0.995 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 17.636 4.140 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.026 4.026 6 C -0.023 4.023 7 N -0.362 5.362 8 C 0.307 3.693 9 O -0.387 6.387 10 C -0.093 4.093 11 N -0.242 5.242 12 C -0.117 4.117 13 C 0.105 3.895 14 H 0.057 0.943 15 C -0.232 4.232 16 C -0.536 4.536 17 H 0.083 0.917 18 C -0.143 4.143 19 N -0.536 5.536 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.031 4.031 25 C -0.033 4.033 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.028 0.972 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.958 18.082 3.715 19.727 hybrid contribution -0.240 -1.060 0.583 1.233 sum -7.197 17.022 4.298 18.974 Atomic orbital electron populations 1.21950 0.91627 1.05546 1.04276 1.20869 0.90722 0.82909 0.75301 1.90717 1.70792 1.31012 1.50090 1.48124 1.07069 1.06040 1.73594 1.22027 0.79465 1.02225 0.98840 1.21881 0.99031 0.83719 0.97697 1.48160 1.06275 1.05882 1.75879 1.21140 0.88377 0.84945 0.74849 1.90647 1.13952 1.86590 1.47543 1.21954 0.95197 0.90091 1.02015 1.62100 1.24261 1.03247 1.34569 1.22360 0.97760 1.02308 0.89270 1.19376 0.92272 0.84027 0.93856 0.94254 1.22425 0.99045 1.01967 0.99760 1.21156 0.93351 0.90994 1.48078 0.91696 1.24912 0.95348 0.98667 0.95359 1.69881 1.13829 1.19682 1.50194 0.86451 0.81768 0.81755 0.77530 1.19668 1.21192 1.21047 1.22199 0.80701 1.02023 0.98165 1.22311 0.97279 0.84230 0.99491 0.89272 0.88967 0.89170 0.90929 0.87964 0.87734 0.91375 0.92821 0.88743 0.97223 0.90701 0.92139 0.89173 0.94960 0.97584 0.93068 0.90749 0.87932 0.90373 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 8.66 36.00 0.31 -0.62 16 2 C 0.51 4.97 7.81 -10.99 -0.09 4.89 16 3 O -0.55 -7.65 16.49 5.55 0.09 -7.56 16 4 N -0.61 -5.44 2.95 -172.19 -0.51 -5.95 16 5 C 0.10 0.97 6.59 -3.60 -0.02 0.94 16 6 C 0.10 1.10 6.59 -3.59 -0.02 1.07 16 7 N -0.62 -7.42 2.94 -172.20 -0.51 -7.92 16 8 C 0.52 8.31 7.42 -10.98 -0.08 8.23 16 9 O -0.51 -10.18 13.71 5.55 0.08 -10.10 16 10 C 0.04 0.66 3.23 -4.97 -0.02 0.64 16 11 N -0.52 -11.20 4.48 -237.73 -1.06 -12.27 16 12 C 0.03 0.65 8.44 60.06 0.51 1.16 16 13 C 0.21 5.13 2.34 -68.87 -0.16 4.97 16 14 H 0.04 1.04 8.03 -51.93 -0.42 0.62 16 15 C -0.17 -3.93 8.27 37.16 0.31 -3.63 16 16 C -0.50 -13.50 7.89 -34.44 -0.27 -13.77 16 17 H 0.06 1.81 6.77 -52.48 -0.36 1.45 16 18 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 19 N -0.90 -24.88 11.32 55.43 0.63 -24.25 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.09 0.76 6.54 -3.35 -0.02 0.74 16 25 C 0.09 0.59 6.52 -3.35 -0.02 0.57 16 26 H 0.09 0.32 7.91 -51.93 -0.41 -0.09 16 27 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.09 0.32 7.72 -51.93 -0.40 -0.08 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.07 6.99 -51.93 -0.36 0.71 16 31 H 0.10 1.29 6.99 -51.93 -0.36 0.92 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.82 6.52 -51.92 -0.34 0.48 16 34 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 35 H 0.01 0.19 6.51 -51.93 -0.34 -0.15 16 36 H 0.07 1.67 6.42 -51.93 -0.33 1.34 16 37 H 0.06 1.23 5.88 -51.93 -0.31 0.92 16 38 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 39 H 0.03 0.72 6.47 -51.93 -0.34 0.39 16 40 H 0.01 0.10 6.75 -51.93 -0.35 -0.25 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.78 5.91 -51.93 -0.31 0.47 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.36 5.91 -51.93 -0.31 0.05 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -33.67 345.98 -7.66 -41.33 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.89 Total: -1.38 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 0.32 Total: 6.66 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -1.45 Total: -50.40 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.67 -7.66 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161790721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.102 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds