Wall clock time and date at job start Tue Mar 31 2020 04:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.47317 * 2 1 4 4 C 1.53003 * 109.46910 * 240.00018 * 2 1 3 5 5 C 1.53001 * 109.47362 * 299.99988 * 4 2 1 6 6 C 1.52994 * 109.47206 * 300.00003 * 5 4 2 7 7 C 1.52995 * 109.47223 * 60.00129 * 6 5 4 8 8 C 1.53000 * 109.47185 * 299.99762 * 7 6 5 9 9 H 1.09002 * 109.47304 * 300.00327 * 8 7 6 10 10 C 1.53003 * 109.47622 * 179.97438 * 8 7 6 11 11 N 1.46500 * 109.46959 * 64.99928 * 10 8 7 12 12 C 1.34772 * 120.00126 * 180.02562 * 11 10 8 13 13 O 1.21592 * 119.99810 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00212 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47215 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31411 * 119.99899 * 180.27617 * 21 19 18 23 23 Si 1.86800 * 120.00160 * 0.27431 * 21 19 18 24 24 H 1.48508 * 109.46685 * 89.99768 * 23 21 19 25 25 H 1.48494 * 109.47357 * 209.99847 * 23 21 19 26 26 H 1.48494 * 109.47227 * 330.00365 * 23 21 19 27 27 H 1.08996 * 109.46359 * 299.99377 * 1 2 3 28 28 H 1.08994 * 109.46914 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47089 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46835 * 60.00229 * 4 2 1 32 32 H 1.09004 * 109.46809 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.46771 * 60.00403 * 5 4 2 34 34 H 1.08995 * 109.47095 * 299.99731 * 6 5 4 35 35 H 1.09002 * 109.47201 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47265 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47738 * 59.99511 * 7 6 5 38 38 H 1.09000 * 109.46763 * 305.00168 * 10 8 7 39 39 H 1.08998 * 109.47423 * 185.00215 * 10 8 7 40 40 H 0.97003 * 119.99532 * 0.02562 * 11 10 8 41 41 H 0.97005 * 120.00065 * 0.02562 * 14 12 11 42 42 H 1.09004 * 109.47039 * 60.00081 * 15 14 12 43 43 H 1.08994 * 109.47376 * 299.99946 * 15 14 12 44 44 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8851 -0.0002 7 6 1.5300 -2.1639 1.2491 8 6 2.0401 -0.7214 1.2492 9 1 3.1301 -0.7214 1.2492 10 6 1.5296 0.0000 2.4982 11 7 2.1132 -0.6175 3.6916 12 6 1.8039 -0.1443 4.9150 13 8 1.0400 0.7950 5.0282 14 7 2.3412 -0.7120 6.0129 15 6 2.0045 -0.1979 7.3427 16 6 2.7312 -1.0011 8.3906 17 8 3.4592 -1.9129 8.0591 18 7 2.5722 -0.7062 9.6961 19 6 3.2337 -1.4365 10.6493 20 1 3.8826 -2.2479 10.3541 21 6 3.0743 -1.1287 11.9949 22 7 3.7126 -1.8253 12.9083 23 14 1.9528 0.2751 12.5055 24 1 0.5768 -0.2423 12.7163 25 1 2.4546 0.8757 13.7674 26 1 1.9351 1.3078 11.4385 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 -0.7209 -1.2495 31 1 1.6767 -0.2074 -2.1392 32 1 1.8930 -2.6774 -2.1396 33 1 0.4400 -2.1637 -1.2494 34 1 3.1300 -2.8851 -0.0002 35 1 1.6763 -3.9126 0.0000 36 1 1.8930 -2.6781 2.1391 37 1 0.4400 -2.1638 1.2492 38 1 0.4432 -0.0769 2.5436 39 1 1.8180 1.0502 2.4546 40 1 2.7223 -1.3670 3.6012 41 1 2.9509 -1.4611 5.9225 42 1 0.9295 -0.2807 7.5028 43 1 2.3030 0.8479 7.4143 44 1 1.9904 0.0233 9.9612 45 1 3.6011 -1.6107 13.8477 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358315249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:30 Heat of formation + Delta-G solvation = -92.202104 kcal Electronic energy + Delta-G solvation = -23842.572678 eV Core-core repulsion = 20279.943756 eV Total energy + Delta-G solvation = -3562.628923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27921 -39.40561 -38.31779 -34.98963 -34.42002 -33.69760 -32.43376 -31.79767 -31.23152 -28.11832 -27.16282 -25.47510 -24.11568 -22.60197 -21.58869 -20.70006 -19.63388 -19.00969 -18.64222 -17.95699 -16.40116 -16.08309 -15.71937 -15.51968 -15.14580 -14.89639 -14.60380 -14.50264 -14.11413 -14.04834 -13.78925 -13.23572 -13.12460 -12.98508 -12.90616 -12.47564 -12.22612 -12.15084 -12.06493 -11.86493 -11.73674 -11.39269 -11.23129 -11.14951 -10.63258 -10.53948 -10.40075 -10.27483 -10.07708 -10.03971 -9.68822 -9.16407 -8.75492 -8.63472 -8.29437 -6.40001 -3.92478 2.80431 3.00704 3.05455 3.13438 3.37148 3.59301 4.04414 4.25670 4.27862 4.32876 4.42967 4.64775 4.79292 4.85704 4.94735 5.01353 5.02420 5.12576 5.15151 5.26234 5.35141 5.43617 5.51221 5.61201 5.64127 5.66675 5.71462 5.76714 5.79709 5.82069 5.87467 5.89327 5.93580 5.99320 6.04848 6.23171 6.51929 6.67184 7.07015 7.46070 8.01318 8.20815 8.45520 8.76965 8.82663 9.30882 9.64804 10.72166 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.002364 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.047434 B =11842.968336 C =12356.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.094 4.094 9 H 0.077 0.923 10 C 0.144 3.856 11 N -0.748 5.748 12 C 0.705 3.295 13 O -0.600 6.600 14 N -0.726 5.726 15 C 0.126 3.874 16 C 0.439 3.561 17 O -0.580 6.580 18 N -0.577 5.577 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.044 3.956 22 N -0.875 5.875 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.396 0.604 41 H 0.407 0.593 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.375 0.625 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 2.761 -26.679 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.113 4.113 9 H 0.095 0.905 10 C 0.019 3.981 11 N -0.404 5.404 12 C 0.404 3.596 13 O -0.479 6.479 14 N -0.383 5.383 15 C -0.002 4.002 16 C 0.225 3.775 17 O -0.464 6.464 18 N -0.215 5.215 19 C -0.438 4.438 20 H 0.139 0.861 21 C -0.160 4.160 22 N -0.514 5.514 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.245 0.755 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.759 2.975 -26.520 27.300 hybrid contribution -0.218 0.392 0.609 0.757 sum -5.977 3.367 -25.910 26.803 Atomic orbital electron populations 1.22028 0.95108 1.02300 1.01892 1.21032 0.96190 0.99114 0.93795 0.90945 1.21551 1.00558 0.95669 0.97301 1.21581 1.01074 0.95591 0.97720 1.21525 1.00785 0.98849 0.94520 1.21651 1.01379 0.94617 0.97899 1.21422 1.00784 0.95367 0.93734 0.90479 1.21271 0.98182 0.96576 0.82042 1.45078 1.52352 1.38410 1.04569 1.15851 0.80931 0.82403 0.80406 1.90899 1.40335 1.30616 1.86037 1.44752 1.51255 1.38213 1.04129 1.20791 1.00094 0.98030 0.81320 1.19676 0.86842 0.87636 0.83360 1.90532 1.42124 1.33195 1.80544 1.42120 1.42563 1.31324 1.05460 1.19437 1.24900 1.14303 0.85171 0.86106 1.25071 0.97524 0.97896 0.95470 1.69620 1.41030 1.39443 1.01294 0.86664 0.81339 0.82104 0.79359 1.19391 1.20005 1.19194 0.92168 0.92825 0.91937 0.91989 0.91980 0.92306 0.91668 0.92007 0.92035 0.91799 0.91336 0.91436 0.91821 0.76994 0.75523 0.89926 0.89928 0.79220 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.15 37.16 0.30 -0.73 16 2 C -0.08 -0.54 2.72 -90.61 -0.25 -0.78 16 3 H 0.07 0.48 8.14 -51.94 -0.42 0.06 16 4 C -0.11 -0.66 5.45 -26.73 -0.15 -0.81 16 5 C -0.12 -0.71 5.65 -26.73 -0.15 -0.86 16 6 C -0.12 -0.75 5.92 -26.74 -0.16 -0.91 16 7 C -0.12 -0.84 4.80 -26.73 -0.13 -0.97 16 8 C -0.09 -0.69 2.00 -90.61 -0.18 -0.87 16 9 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 10 C 0.14 1.44 4.56 -4.04 -0.02 1.42 16 11 N -0.75 -8.67 5.29 -65.23 -0.34 -9.01 16 12 C 0.70 11.16 8.57 -86.93 -0.74 10.41 16 13 O -0.60 -11.49 16.34 5.28 0.09 -11.40 16 14 N -0.73 -11.83 5.53 -66.42 -0.37 -12.19 16 15 C 0.13 2.24 6.15 -5.19 -0.03 2.21 16 16 C 0.44 9.72 7.85 -10.98 -0.09 9.64 16 17 O -0.58 -14.68 15.24 5.55 0.08 -14.59 16 18 N -0.58 -13.51 5.09 -10.96 -0.06 -13.56 16 19 C -0.31 -8.56 10.16 -14.93 -0.15 -8.72 16 20 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 22 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16 23 Si 0.88 19.10 27.74 -169.99 -4.72 14.38 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.27 -5.31 6.51 56.52 0.37 -4.94 16 27 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 37 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 38 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 3.74 7.67 -40.82 -0.31 3.43 16 41 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 45 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -32.56 351.64 -8.11 -40.67 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -7.04 Total: 14.55 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -1.84 Total: 10.12 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.01 Total: -59.04 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.17 Total: -25.99 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.72 Total: 14.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.56 -8.11 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.529 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds