Wall clock time and date at job start Tue Mar 31 2020 04:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08988 * 109.47317 * 2 1 4 4 C 1.53003 * 109.46910 * 240.00018 * 2 1 3 5 5 C 1.53001 * 109.47362 * 299.99988 * 4 2 1 6 6 C 1.52994 * 109.47206 * 300.00003 * 5 4 2 7 7 C 1.52995 * 109.47223 * 60.00129 * 6 5 4 8 8 C 1.53000 * 109.47185 * 299.99762 * 7 6 5 9 9 H 1.09002 * 109.47304 * 300.00327 * 8 7 6 10 10 C 1.53003 * 109.47622 * 179.97438 * 8 7 6 11 11 N 1.46500 * 109.46959 * 64.99928 * 10 8 7 12 12 C 1.34772 * 120.00126 * 180.02562 * 11 10 8 13 13 O 1.21592 * 119.99810 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00172 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00212 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47215 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31411 * 119.99899 * 180.27617 * 21 19 18 23 23 Si 1.86800 * 120.00160 * 0.27431 * 21 19 18 24 24 H 1.48508 * 109.46685 * 89.99768 * 23 21 19 25 25 H 1.48494 * 109.47357 * 209.99847 * 23 21 19 26 26 H 1.48494 * 109.47227 * 330.00365 * 23 21 19 27 27 H 1.08996 * 109.46359 * 299.99377 * 1 2 3 28 28 H 1.08994 * 109.46914 * 59.99983 * 1 2 3 29 29 H 1.09002 * 109.47166 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47089 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46835 * 60.00229 * 4 2 1 32 32 H 1.09004 * 109.46809 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.46771 * 60.00403 * 5 4 2 34 34 H 1.08995 * 109.47095 * 299.99731 * 6 5 4 35 35 H 1.09002 * 109.47201 * 179.97438 * 6 5 4 36 36 H 1.09006 * 109.47265 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47738 * 59.99511 * 7 6 5 38 38 H 1.09000 * 109.46763 * 305.00168 * 10 8 7 39 39 H 1.08998 * 109.47423 * 185.00215 * 10 8 7 40 40 H 0.97003 * 119.99532 * 0.02562 * 11 10 8 41 41 H 0.97005 * 120.00065 * 0.02562 * 14 12 11 42 42 H 1.09004 * 109.47039 * 60.00081 * 15 14 12 43 43 H 1.08994 * 109.47376 * 299.99946 * 15 14 12 44 44 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 45 45 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0400 -2.8851 -0.0002 7 6 1.5300 -2.1639 1.2491 8 6 2.0401 -0.7214 1.2492 9 1 3.1301 -0.7214 1.2492 10 6 1.5296 0.0000 2.4982 11 7 2.1132 -0.6175 3.6916 12 6 1.8039 -0.1443 4.9150 13 8 1.0400 0.7950 5.0282 14 7 2.3412 -0.7120 6.0129 15 6 2.0045 -0.1979 7.3427 16 6 2.7312 -1.0011 8.3906 17 8 3.4592 -1.9129 8.0591 18 7 2.5722 -0.7062 9.6961 19 6 3.2337 -1.4365 10.6493 20 1 3.8826 -2.2479 10.3541 21 6 3.0743 -1.1287 11.9949 22 7 3.7126 -1.8253 12.9083 23 14 1.9528 0.2751 12.5055 24 1 0.5768 -0.2423 12.7163 25 1 2.4546 0.8757 13.7674 26 1 1.9351 1.3078 11.4385 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 -0.7209 -1.2495 31 1 1.6767 -0.2074 -2.1392 32 1 1.8930 -2.6774 -2.1396 33 1 0.4400 -2.1637 -1.2494 34 1 3.1300 -2.8851 -0.0002 35 1 1.6763 -3.9126 0.0000 36 1 1.8930 -2.6781 2.1391 37 1 0.4400 -2.1638 1.2492 38 1 0.4432 -0.0769 2.5436 39 1 1.8180 1.0502 2.4546 40 1 2.7223 -1.3670 3.6012 41 1 2.9509 -1.4611 5.9225 42 1 0.9295 -0.2807 7.5028 43 1 2.3030 0.8479 7.4143 44 1 1.9904 0.0233 9.9612 45 1 3.6011 -1.6107 13.8477 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358315249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:29 Heat of formation + Delta-G solvation = -116.088342 kcal Electronic energy + Delta-G solvation = -23843.608464 eV Core-core repulsion = 20279.943756 eV Total energy + Delta-G solvation = -3563.664708 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34543 -40.46635 -39.87409 -36.32420 -35.86504 -35.27615 -33.83132 -32.99551 -31.96959 -29.45670 -27.94501 -26.57197 -25.64465 -23.18004 -22.25354 -21.86079 -21.46155 -20.58848 -19.75585 -19.02989 -17.58829 -17.40146 -16.99204 -16.74134 -16.51282 -16.09102 -15.83098 -15.47224 -15.29460 -14.96074 -14.81865 -14.70940 -14.31102 -14.02048 -13.96512 -13.68613 -13.53659 -13.43794 -12.96173 -12.77094 -12.44360 -12.39627 -12.34746 -11.99917 -11.91638 -11.75530 -11.57791 -11.43929 -11.06686 -10.90700 -10.80520 -10.64984 -10.40678 -10.31331 -9.77931 -8.45333 -6.07216 1.31651 1.34534 1.44184 1.62386 1.79191 2.13249 2.20837 2.80267 3.10985 3.32685 3.66573 3.77245 3.83541 4.00214 4.22961 4.32003 4.33942 4.40890 4.45232 4.49039 4.50186 4.55788 4.69805 4.77412 4.83746 4.91597 4.99574 5.10080 5.15072 5.23324 5.29280 5.30830 5.31299 5.39559 5.48042 5.49001 5.51113 5.57577 5.70072 5.88453 5.96414 6.49157 6.78364 7.03042 7.28930 7.53932 7.78484 8.71035 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.002364 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.047434 B =11842.968336 C =12356.565828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.084 4.084 9 H 0.082 0.918 10 C 0.144 3.856 11 N -0.732 5.732 12 C 0.704 3.296 13 O -0.632 6.632 14 N -0.728 5.728 15 C 0.138 3.862 16 C 0.446 3.554 17 O -0.614 6.614 18 N -0.578 5.578 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.959 3.041 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.233 1.233 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.408 0.592 41 H 0.409 0.591 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.392 0.608 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 4.415 -28.206 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.103 4.103 9 H 0.101 0.899 10 C 0.020 3.980 11 N -0.388 5.388 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.385 5.385 15 C 0.010 3.990 16 C 0.234 3.766 17 O -0.500 6.500 18 N -0.218 5.218 19 C -0.460 4.460 20 H 0.082 0.918 21 C -0.209 4.209 22 N -0.565 5.565 23 Si 0.779 3.221 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.156 1.156 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.244 0.756 41 H 0.247 0.753 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.228 0.772 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.081 4.612 -28.102 29.345 hybrid contribution 0.260 -0.226 0.980 1.039 sum -6.821 4.387 -27.122 28.309 Atomic orbital electron populations 1.22011 0.95190 1.02276 1.01716 1.21032 0.96094 0.99174 0.93699 0.90875 1.21533 1.00666 0.95570 0.97023 1.21579 1.01038 0.95581 0.97684 1.21510 1.00870 0.98867 0.94256 1.21637 1.01104 0.94450 0.98282 1.21355 1.00977 0.95249 0.92710 0.89920 1.21377 0.97757 0.96502 0.82319 1.45029 1.51805 1.38245 1.03706 1.15947 0.80561 0.82043 0.81088 1.90877 1.41811 1.32087 1.86584 1.44715 1.51521 1.38386 1.03910 1.20684 1.00282 0.97744 0.80324 1.20507 0.85570 0.86830 0.83729 1.90521 1.43450 1.34790 1.81261 1.41925 1.42959 1.31725 1.05210 1.19027 1.25716 1.14350 0.86883 0.91830 1.26074 0.99046 1.01066 0.94695 1.69781 1.43001 1.41765 1.02001 0.85441 0.78673 0.78354 0.79638 1.18083 1.19827 1.15603 0.93250 0.92096 0.91889 0.91778 0.91282 0.91651 0.91742 0.91820 0.91906 0.92219 0.91792 0.92211 0.92552 0.75584 0.75302 0.88071 0.88156 0.77213 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.15 71.98 0.59 -1.26 16 2 C -0.08 -0.93 2.72 -10.79 -0.03 -0.96 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.06 5.45 30.60 0.17 -0.90 16 5 C -0.12 -1.18 5.65 30.59 0.17 -1.01 16 6 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 7 C -0.12 -1.50 4.80 30.59 0.15 -1.36 16 8 C -0.08 -1.10 2.00 -10.79 -0.02 -1.12 16 9 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 10 C 0.14 2.72 4.56 86.38 0.39 3.11 16 11 N -0.73 -15.96 5.29 -478.54 -2.53 -18.49 16 12 C 0.70 21.24 8.57 179.06 1.53 22.77 16 13 O -0.63 -23.23 16.34 -4.01 -0.07 -23.30 16 14 N -0.73 -22.65 5.53 -482.31 -2.67 -25.32 16 15 C 0.14 4.62 6.15 85.63 0.53 5.14 16 16 C 0.45 19.53 7.85 87.66 0.69 20.21 16 17 O -0.61 -31.63 15.24 -3.07 -0.05 -31.68 16 18 N -0.58 -26.69 5.09 -306.97 -1.56 -28.25 16 19 C -0.33 -18.81 10.16 84.04 0.85 -17.95 16 20 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 22 N -0.93 -54.45 13.96 21.66 0.30 -54.14 16 23 Si 0.96 38.22 27.74 68.60 1.90 40.13 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.23 -7.93 6.51 99.48 0.65 -7.29 16 27 H 0.05 0.70 6.54 -2.39 -0.02 0.68 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.74 4.81 -2.39 -0.01 0.73 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.65 6.43 -2.39 -0.02 0.63 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.81 7.18 -2.38 -0.02 0.79 16 37 H 0.06 0.89 6.43 -2.39 -0.02 0.87 16 38 H 0.06 1.25 6.70 -2.39 -0.02 1.24 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.41 7.08 7.67 -92.71 -0.71 6.37 16 41 H 0.41 12.60 7.45 -92.70 -0.69 11.91 16 42 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 45 H 0.28 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -72.66 351.64 0.03 -72.63 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -0.97 Total: 42.84 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 5.67 Total: 25.57 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -6.46 Total: -126.20 kcal Atomic # 8 Polarization: -54.86 SS G_CDS: -0.11 Total: -54.98 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.13 kcal Total: -72.66 0.03 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358315249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.458 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds