Wall clock time and date at job start Tue Mar 31 2020 04:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55522 * 2 1 4 4 C 1.53000 * 117.50145 * 214.28681 * 2 1 3 5 5 C 1.53002 * 60.00175 * 252.51352 * 4 2 1 6 6 H 1.08997 * 117.51347 * 252.51643 * 5 4 2 7 7 C 1.50702 * 117.49978 * 107.48787 * 5 4 2 8 8 O 1.21276 * 119.99982 * 291.37794 * 7 5 4 9 9 N 1.34782 * 119.99912 * 111.37471 * 7 5 4 10 10 C 1.46501 * 119.99665 * 0.02562 * 9 7 5 11 11 C 1.46500 * 119.99907 * 179.97438 * 9 7 5 12 12 C 1.52999 * 109.46897 * 90.00195 * 11 9 7 13 13 C 1.52998 * 109.47264 * 179.97438 * 12 11 9 14 14 N 1.46896 * 109.47624 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00338 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46987 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 H 1.09004 * 109.46977 * 274.33409 * 1 2 3 28 28 H 1.08999 * 109.46691 * 34.33307 * 1 2 3 29 29 H 1.08996 * 109.46948 * 154.33084 * 1 2 3 30 30 H 1.08998 * 117.50252 * 145.02203 * 4 2 1 31 31 H 1.09009 * 117.49339 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.46884 * 269.99525 * 10 9 7 33 33 H 1.08997 * 109.47472 * 29.99751 * 10 9 7 34 34 H 1.08999 * 109.46715 * 149.99830 * 10 9 7 35 35 H 1.08996 * 109.47222 * 330.00100 * 11 9 7 36 36 H 1.08998 * 109.46560 * 210.00091 * 11 9 7 37 37 H 1.09004 * 109.47109 * 60.00204 * 12 11 9 38 38 H 1.08996 * 109.47270 * 300.00299 * 12 11 9 39 39 H 1.09004 * 109.46677 * 60.00201 * 13 12 11 40 40 H 1.09004 * 109.46850 * 300.00500 * 13 12 11 41 41 H 1.00900 * 110.99693 * 56.04421 * 14 13 12 42 42 H 1.09003 * 109.46477 * 60.00383 * 15 14 13 43 43 H 1.08993 * 109.47002 * 300.00709 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 3.1713 -0.8746 1.2690 7 6 1.3720 -2.1401 1.4617 8 8 0.1638 -2.0527 1.4020 9 7 1.9415 -3.1488 2.1506 10 6 3.4009 -3.2540 2.2231 11 6 1.1011 -4.1395 2.8279 12 6 0.8080 -5.2981 1.8726 13 6 -0.0691 -6.3330 2.5800 14 7 -0.3501 -7.4457 1.6631 15 6 -1.1915 -8.4614 2.3099 16 6 -1.4583 -9.5840 1.3407 17 8 -0.9930 -9.5424 0.2214 18 7 -2.2133 -10.6348 1.7181 19 6 -2.4607 -11.6536 0.8345 20 1 -2.0470 -11.6161 -0.1624 21 6 -3.2438 -12.7341 1.2217 22 7 -3.7476 -12.7794 2.4346 23 14 -3.5804 -14.1224 0.0181 24 1 -2.9036 -13.8342 -1.2720 25 1 -3.0609 -15.3973 0.5749 26 1 -5.0438 -14.2399 -0.2055 27 1 -0.3633 0.0777 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1716 -0.8757 -1.2679 31 1 1.6112 -1.8588 -1.2679 32 1 3.7632 -3.8596 1.3924 33 1 3.8403 -2.2582 2.1655 34 1 3.6850 -3.7226 3.1653 35 1 0.1639 -3.6736 3.1323 36 1 1.6220 -4.5169 3.7078 37 1 1.7453 -5.7640 1.5682 38 1 0.2873 -4.9206 0.9926 39 1 -1.0064 -5.8673 2.8847 40 1 0.4520 -6.7103 3.4599 41 1 0.5053 -7.8529 1.3159 42 1 -2.1367 -8.0108 2.6127 43 1 -0.6779 -8.8530 3.1879 44 1 -2.5851 -10.6683 2.6134 45 1 -4.2939 -13.5339 2.7049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498513708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:11 Heat of formation + Delta-G solvation = -47.725245 kcal Electronic energy + Delta-G solvation = -23278.351594 eV Core-core repulsion = 19717.651333 eV Total energy + Delta-G solvation = -3560.700262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53264 -38.29565 -37.47659 -36.16223 -35.38438 -33.85550 -31.90485 -31.14865 -28.86924 -27.74643 -26.71731 -25.41305 -23.97849 -22.75327 -21.59306 -21.07717 -19.20098 -18.97735 -17.85441 -17.69740 -16.48029 -15.89961 -15.80749 -15.57380 -15.26002 -14.56451 -14.31361 -14.22634 -14.03163 -13.62878 -13.45950 -13.35075 -13.11289 -12.96866 -12.77522 -12.57690 -12.25054 -12.04725 -11.82926 -11.75220 -11.66249 -11.45888 -11.32278 -11.04361 -10.72429 -10.56922 -10.33845 -10.32493 -10.20297 -9.71114 -9.49731 -8.92529 -8.42599 -8.01347 -7.92952 -6.39490 -3.80159 2.27210 2.67586 3.18090 3.28376 3.35997 3.48233 3.93859 4.11086 4.16709 4.32150 4.39508 4.50758 4.60651 4.80418 4.85035 5.02614 5.07666 5.11655 5.18267 5.26169 5.27485 5.34053 5.36343 5.42755 5.49885 5.51704 5.62946 5.70650 5.77357 5.82807 5.88219 6.02312 6.09525 6.13419 6.28880 6.31699 6.36910 7.10483 7.27460 7.57685 7.71288 7.98475 8.09271 8.64028 9.20408 9.57084 10.08718 10.78426 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.002087 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.285099 B =13410.099562 C =13718.123667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.149 4.149 5 C -0.196 4.196 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.527 6.527 9 N -0.615 5.615 10 C 0.079 3.921 11 C 0.118 3.882 12 C -0.130 4.130 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.348 0.652 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 23.381 3.076 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.139 4.139 3 H 0.128 0.872 4 C -0.187 4.187 5 C -0.217 4.217 6 H 0.140 0.860 7 C 0.330 3.670 8 O -0.404 6.404 9 N -0.348 5.348 10 C -0.065 4.065 11 C -0.005 4.005 12 C -0.169 4.169 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.167 0.833 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.226 0.774 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.820 23.606 2.086 27.433 hybrid contribution 0.448 -1.335 0.798 1.618 sum 14.267 22.272 2.884 26.606 Atomic orbital electron populations 1.21376 0.91344 1.01658 1.02605 1.22389 0.96744 0.93425 1.01293 0.87233 1.23091 1.03106 1.01942 0.90548 1.22338 1.02043 1.01353 0.96004 0.86001 1.19692 0.88026 0.80997 0.78275 1.90727 1.14466 1.74694 1.60476 1.47815 1.07142 1.27167 1.52674 1.21833 0.79669 1.02489 1.02478 1.21474 0.95906 0.88697 0.94460 1.21876 0.99971 0.95260 0.99814 1.21858 0.99125 0.92246 0.93459 1.60034 1.22805 1.10431 1.36886 1.21671 0.98541 0.92673 0.95302 1.19832 0.84307 0.84196 0.88987 1.90520 1.54896 1.79669 1.21637 1.41878 1.45004 1.17973 1.15317 1.19760 1.28916 0.97307 0.96768 0.87880 1.25271 0.96794 0.99092 0.96920 1.69624 1.34721 1.32192 1.17842 0.85792 0.78088 0.80177 0.80237 1.19221 1.20801 1.20736 0.91405 0.93255 0.91564 0.87861 0.88043 0.92362 0.91008 0.91015 0.89642 0.90626 0.92002 0.90493 0.90936 0.95629 0.83312 0.89572 0.93921 0.77450 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 8.43 37.16 0.31 -0.79 16 2 C -0.12 -0.94 6.41 -90.62 -0.58 -1.52 16 3 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.09 9.88 -26.73 -0.26 -1.36 16 5 C -0.20 -1.55 5.29 -91.77 -0.49 -2.03 16 6 H 0.12 0.67 6.44 -51.93 -0.33 0.33 16 7 C 0.54 5.92 7.44 -10.98 -0.08 5.84 16 8 O -0.53 -7.59 12.68 5.56 0.07 -7.52 16 9 N -0.61 -5.64 2.87 -181.57 -0.52 -6.16 16 10 C 0.08 0.44 10.31 59.85 0.62 1.06 16 11 C 0.12 1.14 5.45 -4.04 -0.02 1.12 16 12 C -0.13 -1.52 5.80 -26.73 -0.16 -1.67 16 13 C 0.06 0.82 5.68 -3.83 -0.02 0.80 16 14 N -0.67 -11.49 6.13 -115.06 -0.70 -12.20 16 15 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 16 C 0.44 10.79 7.82 -10.99 -0.09 10.71 16 17 O -0.58 -16.38 15.78 5.55 0.09 -16.29 16 18 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 19 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 20 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 23 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H 0.07 0.75 7.26 -51.93 -0.38 0.38 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.78 7.01 -51.93 -0.36 0.41 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.90 8.05 -51.92 -0.42 0.48 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.29 6.00 -51.93 -0.31 -0.03 16 34 H 0.07 0.32 7.89 -51.93 -0.41 -0.09 16 35 H 0.09 0.95 7.42 -51.93 -0.39 0.56 16 36 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 42 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.05 371.70 -8.26 -42.31 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -7.40 Total: 11.97 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.04 Total: 4.89 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.56 Total: -57.32 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: 0.16 Total: -23.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.05 -8.26 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498513708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.415 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds