Wall clock time and date at job start Tue Mar 31 2020 04:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.55522 * 2 1 4 4 C 1.53000 * 117.50145 * 214.28681 * 2 1 3 5 5 C 1.53002 * 60.00175 * 252.51352 * 4 2 1 6 6 H 1.08997 * 117.51347 * 252.51643 * 5 4 2 7 7 C 1.50702 * 117.49978 * 107.48787 * 5 4 2 8 8 O 1.21276 * 119.99982 * 291.37794 * 7 5 4 9 9 N 1.34782 * 119.99912 * 111.37471 * 7 5 4 10 10 C 1.46501 * 119.99665 * 0.02562 * 9 7 5 11 11 C 1.46500 * 119.99907 * 179.97438 * 9 7 5 12 12 C 1.52999 * 109.46897 * 90.00195 * 11 9 7 13 13 C 1.52998 * 109.47264 * 179.97438 * 12 11 9 14 14 N 1.46896 * 109.47624 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00338 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46987 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47234 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47403 * 120.00325 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00122 * 23 21 19 27 27 H 1.09004 * 109.46977 * 274.33409 * 1 2 3 28 28 H 1.08999 * 109.46691 * 34.33307 * 1 2 3 29 29 H 1.08996 * 109.46948 * 154.33084 * 1 2 3 30 30 H 1.08998 * 117.50252 * 145.02203 * 4 2 1 31 31 H 1.09009 * 117.49339 * 0.02562 * 4 2 1 32 32 H 1.08999 * 109.46884 * 269.99525 * 10 9 7 33 33 H 1.08997 * 109.47472 * 29.99751 * 10 9 7 34 34 H 1.08999 * 109.46715 * 149.99830 * 10 9 7 35 35 H 1.08996 * 109.47222 * 330.00100 * 11 9 7 36 36 H 1.08998 * 109.46560 * 210.00091 * 11 9 7 37 37 H 1.09004 * 109.47109 * 60.00204 * 12 11 9 38 38 H 1.08996 * 109.47270 * 300.00299 * 12 11 9 39 39 H 1.09004 * 109.46677 * 60.00201 * 13 12 11 40 40 H 1.09004 * 109.46850 * 300.00500 * 13 12 11 41 41 H 1.00900 * 110.99693 * 56.04421 * 14 13 12 42 42 H 1.09003 * 109.46477 * 60.00383 * 15 14 13 43 43 H 1.08993 * 109.47002 * 300.00709 * 15 14 13 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 3.1713 -0.8746 1.2690 7 6 1.3720 -2.1401 1.4617 8 8 0.1638 -2.0527 1.4020 9 7 1.9415 -3.1488 2.1506 10 6 3.4009 -3.2540 2.2231 11 6 1.1011 -4.1395 2.8279 12 6 0.8080 -5.2981 1.8726 13 6 -0.0691 -6.3330 2.5800 14 7 -0.3501 -7.4457 1.6631 15 6 -1.1915 -8.4614 2.3099 16 6 -1.4583 -9.5840 1.3407 17 8 -0.9930 -9.5424 0.2214 18 7 -2.2133 -10.6348 1.7181 19 6 -2.4607 -11.6536 0.8345 20 1 -2.0470 -11.6161 -0.1624 21 6 -3.2438 -12.7341 1.2217 22 7 -3.7476 -12.7794 2.4346 23 14 -3.5804 -14.1224 0.0181 24 1 -2.9036 -13.8342 -1.2720 25 1 -3.0609 -15.3973 0.5749 26 1 -5.0438 -14.2399 -0.2055 27 1 -0.3633 0.0777 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9262 -0.4451 30 1 3.1716 -0.8757 -1.2679 31 1 1.6112 -1.8588 -1.2679 32 1 3.7632 -3.8596 1.3924 33 1 3.8403 -2.2582 2.1655 34 1 3.6850 -3.7226 3.1653 35 1 0.1639 -3.6736 3.1323 36 1 1.6220 -4.5169 3.7078 37 1 1.7453 -5.7640 1.5682 38 1 0.2873 -4.9206 0.9926 39 1 -1.0064 -5.8673 2.8847 40 1 0.4520 -6.7103 3.4599 41 1 0.5053 -7.8529 1.3159 42 1 -2.1367 -8.0108 2.6127 43 1 -0.6779 -8.8530 3.1879 44 1 -2.5851 -10.6683 2.6134 45 1 -4.2939 -13.5339 2.7049 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498513708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:10 Heat of formation + Delta-G solvation = -72.314094 kcal Electronic energy + Delta-G solvation = -23279.417847 eV Core-core repulsion = 19717.651333 eV Total energy + Delta-G solvation = -3561.766514 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28827 -40.18976 -38.25552 -37.21675 -36.43528 -35.86894 -33.36045 -32.86938 -29.66480 -28.88801 -27.55913 -26.79578 -25.40904 -23.70223 -22.54275 -21.78051 -21.08208 -19.93390 -19.69958 -18.39022 -17.90404 -17.23329 -16.80640 -16.55403 -16.49585 -16.08718 -15.81184 -15.54924 -15.07297 -15.01847 -14.71185 -14.23591 -14.14882 -13.76931 -13.59810 -13.53445 -13.48741 -13.33601 -13.03998 -12.92426 -12.83640 -12.68120 -12.46028 -12.41905 -12.37333 -12.12312 -11.69972 -11.53596 -11.19736 -10.96686 -10.53831 -10.38772 -10.04130 -9.65986 -9.34808 -8.48774 -5.97859 1.35439 1.40678 1.50003 1.55323 1.99667 2.01898 2.28123 2.85875 2.91942 3.18153 3.48308 3.55054 3.74819 3.91034 3.95503 4.07067 4.13651 4.24746 4.33472 4.41780 4.44619 4.47451 4.50411 4.56308 4.59718 4.68716 4.76150 4.81280 4.88779 4.95720 4.97684 5.04752 5.14615 5.16805 5.20364 5.39127 5.50912 5.59552 5.87191 6.08808 6.38224 6.40451 6.57664 7.10141 7.21260 7.53165 8.08542 8.68877 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.002087 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.285099 B =13410.099562 C =13718.123667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.126 4.126 3 H 0.138 0.862 4 C -0.143 4.143 5 C -0.195 4.195 6 H 0.155 0.845 7 C 0.527 3.473 8 O -0.575 6.575 9 N -0.615 5.615 10 C 0.072 3.928 11 C 0.121 3.879 12 C -0.118 4.118 13 C 0.067 3.933 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.274 1.274 25 H -0.268 1.268 26 H -0.271 1.271 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.133 0.867 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.344 0.656 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.688 23.934 4.125 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 H 0.156 0.844 4 C -0.181 4.181 5 C -0.216 4.216 6 H 0.173 0.827 7 C 0.317 3.683 8 O -0.455 6.455 9 N -0.346 5.346 10 C -0.070 4.070 11 C -0.002 4.002 12 C -0.157 4.157 13 C -0.062 4.062 14 N -0.323 5.323 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.731 24.166 3.179 29.010 hybrid contribution -0.138 -1.488 0.483 1.571 sum 15.593 22.678 3.663 27.764 Atomic orbital electron populations 1.21274 0.93444 1.00670 1.01275 1.22495 0.95270 0.94904 1.01758 0.84395 1.23126 1.03797 1.00908 0.90227 1.22440 1.02591 1.00345 0.96189 0.82719 1.20370 0.87906 0.81816 0.78191 1.90709 1.16626 1.75982 1.62192 1.47960 1.08724 1.26237 1.51722 1.22100 0.77202 1.04142 1.03554 1.21409 0.95989 0.87965 0.94887 1.21739 0.99508 0.95625 0.98827 1.21906 0.99689 0.90976 0.93669 1.60022 1.22813 1.10859 1.38603 1.21530 0.99983 0.90937 0.94231 1.20901 0.82601 0.84754 0.89387 1.90486 1.56159 1.80650 1.23886 1.41942 1.45587 1.18209 1.15229 1.19708 1.30825 0.99267 0.96622 0.90408 1.26080 0.95819 1.00803 0.98690 1.69679 1.34507 1.33027 1.18842 0.84843 0.78254 0.77331 0.77723 1.19860 1.19356 1.19583 0.93337 0.91796 0.94509 0.84858 0.90474 0.92170 0.88893 0.89212 0.91549 0.87462 0.91215 0.94180 0.91126 0.92807 0.83694 0.88122 0.91031 0.76892 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 8.43 71.98 0.61 -1.63 16 2 C -0.13 -1.81 6.41 -10.79 -0.07 -1.88 16 3 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -1.91 9.88 30.60 0.30 -1.60 16 5 C -0.20 -2.75 5.29 -11.54 -0.06 -2.81 16 6 H 0.16 1.11 6.44 -2.39 -0.02 1.09 16 7 C 0.53 11.50 7.44 87.66 0.65 12.15 16 8 O -0.58 -17.60 12.68 -3.02 -0.04 -17.64 16 9 N -0.61 -10.51 2.87 -846.77 -2.43 -12.94 16 10 C 0.07 0.60 10.31 127.77 1.32 1.92 16 11 C 0.12 2.22 5.45 86.38 0.47 2.69 16 12 C -0.12 -2.71 5.80 30.59 0.18 -2.53 16 13 C 0.07 1.64 5.68 86.30 0.49 2.13 16 14 N -0.69 -23.40 6.13 -517.94 -3.17 -26.57 16 15 C 0.07 2.36 6.17 85.56 0.53 2.89 16 16 C 0.44 21.62 7.82 87.66 0.69 22.31 16 17 O -0.63 -36.15 15.78 -3.07 -0.05 -36.20 16 18 N -0.57 -30.26 5.29 -306.98 -1.62 -31.89 16 19 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 22 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 23 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H 0.05 1.16 7.26 -2.38 -0.02 1.14 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.94 7.01 -2.39 -0.02 0.93 16 30 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.41 8.05 -2.38 -0.02 1.39 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.39 6.00 -2.39 -0.01 0.37 16 34 H 0.09 0.46 7.89 -2.39 -0.02 0.44 16 35 H 0.07 1.49 7.42 -2.39 -0.02 1.47 16 36 H 0.11 1.30 7.89 -2.39 -0.02 1.28 16 37 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.34 11.95 8.43 -89.69 -0.76 11.20 16 42 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -77.19 371.70 0.88 -76.31 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.49 Total: 38.63 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 6.38 Total: 14.65 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.95 Total: -121.43 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.09 Total: -53.83 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.19 0.88 -76.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498513708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds