Wall clock time and date at job start Tue Mar 31 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 5 5 N 1.46901 * 109.46916 * 64.99745 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 O 1.21297 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00290 * 180.02562 * 9 7 6 11 11 H 1.07990 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99812 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99403 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47078 * 60.00286 * 14 12 10 16 16 H 1.48505 * 109.46585 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47705 * 299.99905 * 14 12 10 18 18 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 19 19 N 1.46496 * 109.47060 * 294.99844 * 18 2 1 20 20 C 1.34771 * 120.00172 * 179.97438 * 19 18 2 21 21 O 1.21285 * 120.00169 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.00333 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.54963 * 34.27827 * 22 20 19 24 24 C 1.53005 * 117.49705 * 248.61461 * 22 20 19 25 25 C 1.52992 * 117.50198 * 179.97438 * 22 20 19 26 26 H 1.09000 * 117.49788 * 359.97438 * 25 22 20 27 27 C 1.53000 * 117.49970 * 214.97685 * 25 22 20 28 28 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 30 30 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 31 31 H 1.09004 * 109.46889 * 305.00126 * 4 2 1 32 32 H 1.08995 * 109.47384 * 184.99766 * 4 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 36 36 H 0.97009 * 119.99629 * 359.97438 * 9 7 6 37 37 H 0.97004 * 119.99642 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47107 * 55.00079 * 18 2 1 39 39 H 1.09000 * 109.47382 * 175.00077 * 18 2 1 40 40 H 0.97007 * 120.00066 * 0.02562 * 19 18 2 41 41 H 1.08998 * 117.49798 * 359.97438 * 24 22 20 42 42 H 1.09003 * 117.49916 * 145.02019 * 24 22 20 43 43 H 1.09004 * 109.46763 * 59.99940 * 27 25 22 44 44 H 1.08997 * 109.47234 * 179.97438 * 27 25 22 45 45 H 1.08999 * 109.47160 * 300.00174 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6673 7 6 1.7088 0.1787 -4.8709 8 8 1.0802 1.2059 -4.7253 9 7 2.0351 -0.2418 -6.1090 10 6 1.6571 0.4915 -7.2040 11 1 1.0975 1.4060 -7.0744 12 6 1.9932 0.0575 -8.4805 13 7 2.6737 -1.0555 -8.6381 14 14 1.4775 1.0564 -9.9724 15 1 2.0708 2.4151 -9.8875 16 1 1.9544 0.3837 -11.2074 17 1 -0.0031 1.1642 -10.0083 18 6 2.0401 -0.7213 1.2492 19 7 1.6526 0.0352 2.4423 20 6 1.9957 -0.4137 3.6659 21 8 2.6257 -1.4439 3.7792 22 6 1.5966 0.3642 4.8933 23 1 0.6356 0.8753 4.8341 24 6 2.7105 1.0445 5.6917 25 6 2.0154 -0.1979 6.2532 26 1 2.5793 -1.1306 6.2601 27 6 1.0534 0.0004 7.4263 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1793 -2.4753 34 1 3.2116 -0.7050 -3.6406 35 1 1.6904 -1.6248 -3.7297 36 1 2.5381 -1.0631 -6.2254 37 1 2.9080 -1.3586 -9.5293 38 1 1.6055 -1.7198 1.2950 39 1 3.1264 -0.7995 1.2055 40 1 1.1483 0.8590 2.3518 41 1 3.7320 0.9290 5.3294 42 1 2.4822 2.0029 6.1582 43 1 0.1000 -0.4764 7.1988 44 1 1.4783 -0.4479 8.3243 45 1 0.8964 1.0663 7.5912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:22 Heat of formation + Delta-G solvation = -65.956225 kcal Electronic energy + Delta-G solvation = -22864.480837 eV Core-core repulsion = 19302.990021 eV Total energy + Delta-G solvation = -3561.490816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32158 -38.45393 -37.70839 -36.77303 -34.87578 -33.86302 -32.30904 -31.19150 -29.26639 -27.42223 -27.14719 -25.13864 -23.97264 -22.79705 -21.22992 -20.72409 -20.01524 -19.20921 -17.92515 -17.66024 -16.65155 -15.94392 -15.82354 -15.54036 -15.02065 -14.77708 -14.54357 -14.31207 -14.07433 -13.72818 -13.70257 -13.42915 -13.18640 -12.99679 -12.76799 -12.64005 -12.43706 -12.05676 -11.83960 -11.58884 -11.54365 -11.21717 -11.06169 -10.97349 -10.90447 -10.77908 -10.50727 -10.44310 -10.21506 -10.06188 -9.50096 -9.31650 -8.46655 -8.06919 -7.95993 -6.41607 -3.82570 2.22003 2.82498 3.20136 3.25841 3.30219 3.42205 3.90911 4.08643 4.25954 4.31395 4.34273 4.39326 4.68642 4.71701 4.80653 4.87712 4.89518 5.13150 5.20122 5.25527 5.29090 5.32532 5.35458 5.42600 5.49840 5.56494 5.60137 5.62267 5.71615 5.79286 5.84980 5.89172 5.98573 6.05066 6.12601 6.22555 6.27331 7.19902 7.22855 7.54952 7.65352 7.96754 8.06114 8.61291 9.17670 9.54303 10.05757 10.76017 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.056364 B = 0.001822 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.652580 B =15362.918125 C =15570.444984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.125 3.875 19 N -0.723 5.723 20 C 0.541 3.459 21 O -0.543 6.543 22 C -0.193 4.193 23 H 0.123 0.877 24 C -0.149 4.149 25 C -0.122 4.122 26 H 0.117 0.883 27 C -0.124 4.124 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.183 0.420 26.849 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.431 4.431 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.374 5.374 20 C 0.327 3.673 21 O -0.420 6.420 22 C -0.214 4.214 23 H 0.141 0.859 24 C -0.186 4.186 25 C -0.141 4.141 26 H 0.135 0.865 27 C -0.181 4.181 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.226 0.774 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.551 0.687 26.839 26.893 hybrid contribution -0.767 -0.437 -1.168 1.464 sum -2.318 0.250 25.671 25.777 Atomic orbital electron populations 1.21901 0.94739 1.02048 1.02287 1.21364 0.96450 1.01184 0.93053 0.89259 1.21883 1.00792 0.94414 0.89337 1.60103 1.21020 1.49025 1.00019 1.21674 1.01208 0.95376 0.90009 1.19808 0.85634 0.87939 0.84036 1.90516 1.44461 1.26177 1.85720 1.41860 1.49541 1.24153 1.04417 1.19662 1.33071 1.06700 0.83629 0.87966 1.25265 0.96886 0.96643 0.99112 1.69606 1.38843 1.21661 1.24164 0.85909 0.78995 0.79430 0.79819 1.19881 1.20974 1.19938 1.21393 1.00266 0.95227 0.83048 1.45937 1.57961 1.27854 1.05652 1.19670 0.78844 0.84918 0.83832 1.90703 1.40186 1.24431 1.86690 1.22318 1.01533 1.05781 0.91799 0.85904 1.23119 0.96658 0.97171 1.01652 1.22386 1.01193 0.98835 0.91688 0.86489 1.21408 0.98442 1.01851 0.96423 0.92655 0.92751 0.91388 0.95176 0.90760 0.83077 0.89551 0.93849 0.77437 0.91815 0.91385 0.91233 0.76320 0.88220 0.87710 0.91922 0.91621 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.84 37.16 0.33 -1.06 16 2 C -0.10 -0.98 2.63 -90.62 -0.24 -1.22 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.07 0.78 5.14 -3.82 -0.02 0.76 16 5 N -0.67 -10.56 6.12 -115.05 -0.70 -11.27 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.43 7.82 -10.99 -0.09 10.35 16 8 O -0.58 -15.87 15.78 5.54 0.09 -15.78 16 9 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.12 1.19 5.06 -4.04 -0.02 1.17 16 19 N -0.72 -6.19 5.28 -60.30 -0.32 -6.51 16 20 C 0.54 5.59 7.61 -10.99 -0.08 5.51 16 21 O -0.54 -7.78 16.26 5.55 0.09 -7.69 16 22 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 23 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 24 C -0.15 -0.94 9.88 -26.71 -0.26 -1.20 16 25 C -0.12 -0.87 5.92 -90.61 -0.54 -1.41 16 26 H 0.12 1.04 7.67 -51.93 -0.40 0.64 16 27 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 30 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.35 5.64 6.68 -39.29 -0.26 5.38 16 34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.40 2.52 7.65 -40.82 -0.31 2.21 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -33.26 375.89 -8.32 -41.58 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.43 Total: 12.71 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.36 Total: 3.49 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.36 Total: -56.02 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.18 Total: -23.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.26 -8.32 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.376 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds