Wall clock time and date at job start Tue Mar 31 2020 04:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 5 5 N 1.46901 * 109.46916 * 64.99745 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47066 * 180.02562 * 6 5 4 8 8 O 1.21297 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00196 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00290 * 180.02562 * 9 7 6 11 11 H 1.07990 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38956 * 119.99812 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99403 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47078 * 60.00286 * 14 12 10 16 16 H 1.48505 * 109.46585 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47705 * 299.99905 * 14 12 10 18 18 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 19 19 N 1.46496 * 109.47060 * 294.99844 * 18 2 1 20 20 C 1.34771 * 120.00172 * 179.97438 * 19 18 2 21 21 O 1.21285 * 120.00169 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.00333 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.54963 * 34.27827 * 22 20 19 24 24 C 1.53005 * 117.49705 * 248.61461 * 22 20 19 25 25 C 1.52992 * 117.50198 * 179.97438 * 22 20 19 26 26 H 1.09000 * 117.49788 * 359.97438 * 25 22 20 27 27 C 1.53000 * 117.49970 * 214.97685 * 25 22 20 28 28 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 30 30 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 31 31 H 1.09004 * 109.46889 * 305.00126 * 4 2 1 32 32 H 1.08995 * 109.47384 * 184.99766 * 4 2 1 33 33 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 34 34 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 35 35 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 36 36 H 0.97009 * 119.99629 * 359.97438 * 9 7 6 37 37 H 0.97004 * 119.99642 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47107 * 55.00079 * 18 2 1 39 39 H 1.09000 * 109.47382 * 175.00077 * 18 2 1 40 40 H 0.97007 * 120.00066 * 0.02562 * 19 18 2 41 41 H 1.08998 * 117.49798 * 359.97438 * 24 22 20 42 42 H 1.09003 * 117.49916 * 145.02019 * 24 22 20 43 43 H 1.09004 * 109.46763 * 59.99940 * 27 25 22 44 44 H 1.08997 * 109.47234 * 179.97438 * 27 25 22 45 45 H 1.08999 * 109.47160 * 300.00174 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1248 -0.6271 -3.6673 7 6 1.7088 0.1787 -4.8709 8 8 1.0802 1.2059 -4.7253 9 7 2.0351 -0.2418 -6.1090 10 6 1.6571 0.4915 -7.2040 11 1 1.0975 1.4060 -7.0744 12 6 1.9932 0.0575 -8.4805 13 7 2.6737 -1.0555 -8.6381 14 14 1.4775 1.0564 -9.9724 15 1 2.0708 2.4151 -9.8875 16 1 1.9544 0.3837 -11.2074 17 1 -0.0031 1.1642 -10.0083 18 6 2.0401 -0.7213 1.2492 19 7 1.6526 0.0352 2.4423 20 6 1.9957 -0.4137 3.6659 21 8 2.6257 -1.4439 3.7792 22 6 1.5966 0.3642 4.8933 23 1 0.6356 0.8753 4.8341 24 6 2.7105 1.0445 5.6917 25 6 2.0154 -0.1979 6.2532 26 1 2.5793 -1.1306 6.2601 27 6 1.0534 0.0004 7.4263 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2952 32 1 3.1263 -0.7994 -1.2057 33 1 0.6528 0.1793 -2.4753 34 1 3.2116 -0.7050 -3.6406 35 1 1.6904 -1.6248 -3.7297 36 1 2.5381 -1.0631 -6.2254 37 1 2.9080 -1.3586 -9.5293 38 1 1.6055 -1.7198 1.2950 39 1 3.1264 -0.7995 1.2055 40 1 1.1483 0.8590 2.3518 41 1 3.7320 0.9290 5.3294 42 1 2.4822 2.0029 6.1582 43 1 0.1000 -0.4764 7.1988 44 1 1.4783 -0.4479 8.3243 45 1 0.8964 1.0663 7.5912 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:21 Heat of formation + Delta-G solvation = -90.652674 kcal Electronic energy + Delta-G solvation = -22865.551756 eV Core-core repulsion = 19302.990021 eV Total energy + Delta-G solvation = -3562.561735 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09288 -40.18586 -38.63865 -37.59588 -36.16945 -35.64918 -33.44874 -33.12077 -29.75717 -28.80266 -27.91530 -26.66148 -25.15175 -23.77099 -21.81661 -21.52255 -21.14886 -20.65149 -19.90482 -18.42770 -17.92128 -17.24123 -16.92716 -16.62790 -16.40128 -16.03824 -15.66438 -15.61256 -15.26991 -14.87091 -14.74623 -14.33422 -14.12851 -13.95888 -13.69775 -13.58273 -13.45480 -13.33737 -13.08731 -12.91205 -12.79433 -12.43553 -12.33128 -12.13567 -12.08084 -11.86728 -11.77150 -11.50162 -11.34075 -11.07649 -10.82207 -10.35096 -10.12010 -10.02177 -9.33972 -8.46690 -5.95807 1.40174 1.42098 1.46314 1.53182 2.04664 2.09585 2.29803 2.85468 2.94728 3.20512 3.52486 3.68737 3.79270 3.86532 3.90005 3.92864 3.98562 4.21836 4.32336 4.42584 4.46295 4.51012 4.55468 4.57155 4.69918 4.77960 4.79204 4.87599 4.93498 4.94945 4.99847 5.06192 5.21174 5.24848 5.34006 5.40503 5.41594 5.46310 5.87700 6.09045 6.40723 6.53041 6.59583 7.11934 7.21936 7.55618 8.10631 8.70386 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.056364 B = 0.001822 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.652580 B =15362.918125 C =15570.444984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.086 0.914 4 C 0.066 3.934 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.337 4.337 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.535 3.465 21 O -0.590 6.590 22 C -0.195 4.195 23 H 0.150 0.850 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.091 0.909 27 C -0.119 4.119 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.345 0.655 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.415 0.585 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 1.025 27.712 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.064 4.064 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.196 1.196 18 C 0.007 3.993 19 N -0.363 5.363 20 C 0.323 3.677 21 O -0.471 6.471 22 C -0.215 4.215 23 H 0.168 0.832 24 C -0.176 4.176 25 C -0.150 4.150 26 H 0.109 0.891 27 C -0.176 4.176 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.105 0.895 42 H 0.149 0.851 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.082 1.295 27.711 27.819 hybrid contribution -0.582 -0.642 -1.387 1.636 sum -2.664 0.653 26.324 26.466 Atomic orbital electron populations 1.21879 0.94054 1.02240 1.02556 1.21201 0.96853 1.00618 0.92018 0.89526 1.21968 1.01212 0.94731 0.88460 1.60103 1.20861 1.50011 1.00435 1.21542 1.02239 0.95119 0.88030 1.20866 0.83988 0.87670 0.85018 1.90483 1.45890 1.28097 1.86477 1.41935 1.50056 1.24262 1.04740 1.19659 1.34664 1.07013 0.85309 0.90215 1.26056 0.96376 0.97567 1.01238 1.69670 1.38882 1.22403 1.25118 0.84971 0.78641 0.77995 0.76618 1.19722 1.19509 1.19634 1.21232 0.99648 0.95083 0.83345 1.45853 1.57409 1.28043 1.04975 1.20251 0.77995 0.84506 0.84963 1.90682 1.42432 1.26632 1.87389 1.22388 1.03005 1.05878 0.90277 0.83215 1.23201 0.95718 0.97907 1.00756 1.22405 1.01832 0.98265 0.92531 0.89071 1.21398 0.97780 1.02953 0.95488 0.92515 0.90823 0.92761 0.94120 0.90324 0.83467 0.87863 0.91625 0.76981 0.91288 0.91982 0.92155 0.74727 0.89503 0.85108 0.91846 0.91282 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.84 71.98 0.64 -1.85 16 2 C -0.09 -1.57 2.63 -10.79 -0.03 -1.60 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.07 1.45 5.14 86.30 0.44 1.90 16 5 N -0.68 -20.80 6.12 -517.92 -3.17 -23.97 16 6 C 0.06 2.16 6.17 85.55 0.53 2.68 16 7 C 0.44 20.83 7.82 87.66 0.69 21.52 16 8 O -0.62 -34.43 15.78 -3.08 -0.05 -34.48 16 9 N -0.57 -29.53 5.29 -306.99 -1.62 -31.15 16 10 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 11 H 0.08 4.82 7.16 -2.92 -0.02 4.80 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 14 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 18 C 0.13 2.38 5.06 86.38 0.44 2.82 16 19 N -0.71 -11.20 5.28 -463.07 -2.45 -13.64 16 20 C 0.53 10.70 7.61 87.66 0.67 11.36 16 21 O -0.59 -17.26 16.26 -3.05 -0.05 -17.30 16 22 C -0.19 -2.51 5.91 -11.54 -0.07 -2.58 16 23 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 24 C -0.14 -1.53 9.88 30.61 0.30 -1.22 16 25 C -0.13 -1.76 5.92 -10.79 -0.06 -1.82 16 26 H 0.09 1.70 7.67 -2.39 -0.02 1.68 16 27 C -0.12 -0.98 10.19 71.98 0.73 -0.25 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.07 0.92 7.18 -2.39 -0.02 0.90 16 30 H 0.05 1.08 6.68 -2.39 -0.02 1.06 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.35 10.97 6.68 -89.69 -0.60 10.37 16 34 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 37 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 4.28 7.65 -92.70 -0.71 3.57 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.13 0.76 8.05 -2.39 -0.02 0.74 16 43 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.39 7.90 -2.39 -0.02 0.37 16 Total: -1.00 -72.90 375.89 -0.51 -73.41 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -1.03 Total: 39.34 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 5.55 Total: 12.36 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -6.96 Total: -118.23 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.10 Total: -51.79 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.90 -0.51 -73.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.241 kcal (2) G-P(sol) polarization free energy of solvation -72.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds