Wall clock time and date at job start Tue Mar 31 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 5 5 N 1.46898 * 109.46975 * 295.00089 * 4 2 1 6 6 C 1.46895 * 111.00057 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47427 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99653 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00069 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00337 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99649 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00386 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46863 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47206 * 120.00027 * 14 12 10 17 17 H 1.48491 * 109.47302 * 240.00352 * 14 12 10 18 18 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 19 19 N 1.46499 * 109.46840 * 65.00000 * 18 2 1 20 20 C 1.34779 * 119.99872 * 180.02562 * 19 18 2 21 21 O 1.21278 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99944 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.55038 * 34.41769 * 22 20 19 24 24 C 1.53004 * 117.49678 * 248.74915 * 22 20 19 25 25 C 1.52998 * 117.49715 * 180.08706 * 22 20 19 26 26 H 1.08998 * 117.50077 * 0.02562 * 25 22 20 27 27 C 1.53003 * 117.49749 * 214.97403 * 25 22 20 28 28 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 30 30 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 54.99828 * 4 2 1 32 32 H 1.08998 * 109.47205 * 174.99996 * 4 2 1 33 33 H 1.00906 * 110.99977 * 303.94881 * 5 4 2 34 34 H 1.09008 * 109.47339 * 299.99885 * 6 5 4 35 35 H 1.09004 * 109.47187 * 59.99646 * 6 5 4 36 36 H 0.97001 * 120.00115 * 0.02562 * 9 7 6 37 37 H 0.97007 * 120.00193 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47398 * 185.00327 * 18 2 1 39 39 H 1.09001 * 109.47194 * 305.00507 * 18 2 1 40 40 H 0.97000 * 120.00420 * 0.02562 * 19 18 2 41 41 H 1.09001 * 117.49735 * 359.97438 * 24 22 20 42 42 H 1.08995 * 117.49555 * 144.99804 * 24 22 20 43 43 H 1.09006 * 109.46675 * 60.00776 * 27 25 22 44 44 H 1.09000 * 109.46691 * 179.97438 * 27 25 22 45 45 H 1.08998 * 109.47507 * 300.00602 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1246 -0.6270 3.6672 7 6 1.7087 0.1788 4.8709 8 8 1.0794 1.2054 4.7253 9 7 2.0351 -0.2419 6.1090 10 6 1.6562 0.4909 7.2040 11 1 1.0958 1.4051 7.0745 12 6 1.9931 0.0576 8.4805 13 7 2.6753 -1.0544 8.6381 14 14 1.4775 1.0564 9.9724 15 1 0.7252 2.2572 9.5282 16 1 0.6120 0.2267 10.8485 17 1 2.6849 1.4791 10.7265 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0353 -2.4423 20 6 1.9956 -0.4137 -3.6659 21 8 2.6256 -1.4438 -3.7792 22 6 1.5974 0.3649 -4.8933 23 1 1.5861 1.4488 -4.7792 24 6 0.5491 -0.2594 -5.8165 25 6 2.0150 -0.1981 -6.2532 26 1 2.5773 -1.1318 -6.2603 27 6 2.3841 0.8036 -7.3493 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 3.1262 -0.7995 1.2057 33 1 1.9882 0.9874 2.3967 34 1 1.6902 -1.6248 3.7298 35 1 3.2115 -0.7050 3.6406 36 1 2.5380 -1.0631 6.2254 37 1 2.9109 -1.3568 9.5292 38 1 3.1263 -0.7996 -1.2055 39 1 1.6053 -1.7198 -1.2951 40 1 1.1488 0.8594 -2.3518 41 1 0.1478 -1.2333 -5.5364 42 1 -0.1518 0.4140 -6.3099 43 1 3.2267 1.4106 -7.0179 44 1 2.6594 0.2649 -8.2560 45 1 1.5299 1.4488 -7.5546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:28 Heat of formation + Delta-G solvation = -66.372198 kcal Electronic energy + Delta-G solvation = -22862.197930 eV Core-core repulsion = 19300.689076 eV Total energy + Delta-G solvation = -3561.508854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.31970 -38.42851 -37.69179 -36.74255 -34.87630 -33.86377 -32.33155 -31.19571 -29.26348 -27.42654 -27.00838 -25.09151 -23.95275 -22.78612 -21.22976 -20.81068 -20.08316 -19.17610 -17.92086 -17.67619 -16.47983 -15.92591 -15.84116 -15.42947 -15.15068 -14.72779 -14.53661 -14.31346 -14.14689 -13.71244 -13.63233 -13.44778 -13.22278 -13.08911 -12.61810 -12.45057 -12.39419 -11.95370 -11.83151 -11.68401 -11.52283 -11.16540 -11.08085 -11.00334 -10.88560 -10.78455 -10.50783 -10.34708 -10.22922 -10.05985 -9.52376 -9.31488 -8.46786 -8.06118 -7.96132 -6.42071 -3.82934 2.21911 2.82456 3.16122 3.26688 3.33882 3.41796 3.90670 4.08060 4.25842 4.30839 4.33970 4.38910 4.69958 4.72444 4.83084 4.89361 4.94586 5.16468 5.20613 5.25713 5.28630 5.32615 5.33365 5.46461 5.50890 5.60578 5.62299 5.67307 5.75441 5.86676 5.88990 5.89069 5.98355 6.08067 6.22723 6.26659 6.38967 7.19269 7.22875 7.55035 7.64368 7.96694 8.06242 8.60911 9.17617 9.54173 10.05440 10.75723 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.056462 B = 0.001821 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.792679 B =15370.581866 C =15583.095039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.124 3.876 19 N -0.723 5.723 20 C 0.541 3.459 21 O -0.543 6.543 22 C -0.193 4.193 23 H 0.123 0.877 24 C -0.149 4.149 25 C -0.122 4.122 26 H 0.117 0.883 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.348 0.652 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 1.130 -26.915 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.000 4.000 19 N -0.374 5.374 20 C 0.327 3.673 21 O -0.420 6.420 22 C -0.214 4.214 23 H 0.141 0.859 24 C -0.186 4.186 25 C -0.141 4.141 26 H 0.135 0.865 27 C -0.181 4.181 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.657 0.706 -26.845 26.905 hybrid contribution 0.846 0.484 1.087 1.460 sum -0.811 1.190 -25.758 25.798 Atomic orbital electron populations 1.21757 0.93703 1.02178 1.02101 1.21341 0.97645 0.99943 0.92934 0.90517 1.21899 0.97349 0.97978 0.89219 1.60034 1.64173 1.05831 0.99789 1.21670 0.97768 0.98662 0.90107 1.19810 0.85530 0.87921 0.84089 1.90516 1.44112 1.26431 1.85747 1.41874 1.49521 1.24226 1.04451 1.19759 1.32819 1.06708 0.83618 0.87861 1.25266 0.96927 0.96656 0.99125 1.69622 1.38920 1.21775 1.23969 0.85793 0.78258 0.79571 0.80682 1.19225 1.20744 1.20782 1.21412 1.00021 0.95459 0.83130 1.45938 1.57781 1.28015 1.05658 1.19672 0.78807 0.84953 0.83841 1.90701 1.39974 1.24658 1.86681 1.22321 1.08274 1.00144 0.90682 0.85889 1.23123 0.92108 1.02481 1.00904 1.22396 0.97624 1.01463 0.92610 0.86488 1.21409 1.01648 0.97927 0.97142 0.90402 0.93683 0.92798 0.90726 0.95273 0.83246 0.89574 0.93876 0.77452 0.91923 0.91480 0.91220 0.76315 0.88244 0.87719 0.91906 0.91621 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.95 37.15 0.33 -1.07 16 2 C -0.10 -0.96 2.57 -90.62 -0.23 -1.19 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.77 5.07 -3.82 -0.02 0.75 16 5 N -0.67 -10.30 5.58 -115.05 -0.64 -10.94 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.37 7.82 -10.98 -0.09 10.29 16 8 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 14 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.19 5.06 -4.04 -0.02 1.17 16 19 N -0.72 -6.22 5.28 -60.29 -0.32 -6.54 16 20 C 0.54 5.61 7.61 -10.98 -0.08 5.52 16 21 O -0.54 -7.80 16.26 5.56 0.09 -7.71 16 22 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 23 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.15 -0.93 9.88 -26.69 -0.26 -1.20 16 25 C -0.12 -0.87 5.92 -90.58 -0.54 -1.41 16 26 H 0.12 1.04 7.67 -51.93 -0.40 0.64 16 27 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 28 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 29 H 0.04 0.37 7.18 -51.93 -0.37 0.00 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 5.55 8.43 -39.29 -0.33 5.22 16 34 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.40 2.55 7.66 -40.82 -0.31 2.24 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 43 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -33.06 378.16 -8.34 -41.40 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.55 Total: 12.47 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.34 Total: 3.48 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.29 Total: -55.70 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.06 -8.34 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.970 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds