Wall clock time and date at job start Tue Mar 31 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47493 * 2 1 4 4 C 1.53006 * 109.47155 * 119.99883 * 2 1 3 5 5 N 1.46898 * 109.46975 * 295.00089 * 4 2 1 6 6 C 1.46895 * 111.00057 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47427 * 179.97438 * 6 5 4 8 8 O 1.21288 * 119.99653 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00069 * 179.97438 * 7 6 5 10 10 C 1.37096 * 120.00011 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00001 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00337 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99649 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00386 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46863 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.47206 * 120.00027 * 14 12 10 17 17 H 1.48491 * 109.47302 * 240.00352 * 14 12 10 18 18 C 1.53000 * 109.47345 * 239.99702 * 2 1 3 19 19 N 1.46499 * 109.46840 * 65.00000 * 18 2 1 20 20 C 1.34779 * 119.99872 * 180.02562 * 19 18 2 21 21 O 1.21278 * 120.00071 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99944 * 180.02562 * 20 19 18 23 23 H 1.09002 * 115.55038 * 34.41769 * 22 20 19 24 24 C 1.53004 * 117.49678 * 248.74915 * 22 20 19 25 25 C 1.52998 * 117.49715 * 180.08706 * 22 20 19 26 26 H 1.08998 * 117.50077 * 0.02562 * 25 22 20 27 27 C 1.53003 * 117.49749 * 214.97403 * 25 22 20 28 28 H 1.09004 * 109.47135 * 300.00168 * 1 2 3 29 29 H 1.09002 * 109.47179 * 59.99882 * 1 2 3 30 30 H 1.08993 * 109.47639 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46746 * 54.99828 * 4 2 1 32 32 H 1.08998 * 109.47205 * 174.99996 * 4 2 1 33 33 H 1.00906 * 110.99977 * 303.94881 * 5 4 2 34 34 H 1.09008 * 109.47339 * 299.99885 * 6 5 4 35 35 H 1.09004 * 109.47187 * 59.99646 * 6 5 4 36 36 H 0.97001 * 120.00115 * 0.02562 * 9 7 6 37 37 H 0.97007 * 120.00193 * 179.97438 * 13 12 10 38 38 H 1.09002 * 109.47398 * 185.00327 * 18 2 1 39 39 H 1.09001 * 109.47194 * 305.00507 * 18 2 1 40 40 H 0.97000 * 120.00420 * 0.02562 * 19 18 2 41 41 H 1.09001 * 117.49735 * 359.97438 * 24 22 20 42 42 H 1.08995 * 117.49555 * 144.99804 * 24 22 20 43 43 H 1.09006 * 109.46675 * 60.00776 * 27 25 22 44 44 H 1.09000 * 109.46691 * 179.97438 * 27 25 22 45 45 H 1.08998 * 109.47507 * 300.00602 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1246 -0.6270 3.6672 7 6 1.7087 0.1788 4.8709 8 8 1.0794 1.2054 4.7253 9 7 2.0351 -0.2419 6.1090 10 6 1.6562 0.4909 7.2040 11 1 1.0958 1.4051 7.0745 12 6 1.9931 0.0576 8.4805 13 7 2.6753 -1.0544 8.6381 14 14 1.4775 1.0564 9.9724 15 1 0.7252 2.2572 9.5282 16 1 0.6120 0.2267 10.8485 17 1 2.6849 1.4791 10.7265 18 6 2.0400 -0.7213 -1.2492 19 7 1.6524 0.0353 -2.4423 20 6 1.9956 -0.4137 -3.6659 21 8 2.6256 -1.4438 -3.7792 22 6 1.5974 0.3649 -4.8933 23 1 1.5861 1.4488 -4.7792 24 6 0.5491 -0.2594 -5.8165 25 6 2.0150 -0.1981 -6.2532 26 1 2.5773 -1.1318 -6.2603 27 6 2.3841 0.8036 -7.3493 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6053 -1.7198 1.2952 32 1 3.1262 -0.7995 1.2057 33 1 1.9882 0.9874 2.3967 34 1 1.6902 -1.6248 3.7298 35 1 3.2115 -0.7050 3.6406 36 1 2.5380 -1.0631 6.2254 37 1 2.9109 -1.3568 9.5292 38 1 3.1263 -0.7996 -1.2055 39 1 1.6053 -1.7198 -1.2951 40 1 1.1488 0.8594 -2.3518 41 1 0.1478 -1.2333 -5.5364 42 1 -0.1518 0.4140 -6.3099 43 1 3.2267 1.4106 -7.0179 44 1 2.6594 0.2649 -8.2560 45 1 1.5299 1.4488 -7.5546 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:28 Heat of formation + Delta-G solvation = -90.779835 kcal Electronic energy + Delta-G solvation = -22863.256324 eV Core-core repulsion = 19300.689076 eV Total energy + Delta-G solvation = -3562.567249 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09067 -40.17378 -38.59221 -37.57462 -36.17484 -35.64419 -33.45449 -33.13594 -29.75325 -28.83001 -27.79189 -26.64785 -25.08668 -23.77468 -21.82088 -21.65388 -21.12565 -20.67264 -19.88965 -18.44343 -17.81838 -17.08932 -16.99193 -16.59023 -16.36182 -16.09362 -15.78577 -15.46010 -15.20110 -14.96719 -14.83592 -14.32535 -14.12764 -13.91661 -13.71727 -13.54832 -13.41186 -13.17574 -13.02976 -12.91471 -12.84931 -12.40759 -12.32382 -12.11548 -12.02791 -11.97008 -11.73128 -11.51351 -11.34164 -11.07569 -10.81854 -10.34553 -10.12016 -10.01722 -9.30830 -8.46991 -5.95862 1.36832 1.42150 1.46305 1.56404 2.05072 2.09574 2.29692 2.85305 2.94738 3.20439 3.52263 3.68846 3.79047 3.84854 3.88169 3.98286 4.05398 4.22320 4.32404 4.42501 4.47394 4.48571 4.57522 4.61567 4.71221 4.78804 4.82828 4.87584 4.94639 4.95746 5.05625 5.08422 5.21425 5.26324 5.40612 5.40992 5.44825 5.52895 5.88060 6.09504 6.41092 6.53056 6.59718 7.12373 7.21875 7.56103 8.11079 8.70618 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.056462 B = 0.001821 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.792679 B =15370.581866 C =15583.095039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.064 3.936 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.535 3.465 21 O -0.590 6.590 22 C -0.195 4.195 23 H 0.150 0.850 24 C -0.137 4.137 25 C -0.132 4.132 26 H 0.091 0.909 27 C -0.119 4.119 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.345 0.655 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.415 0.585 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 1.824 -27.825 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.103 0.897 4 C -0.063 4.063 5 N -0.309 5.309 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.562 5.562 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C 0.006 3.994 19 N -0.363 5.363 20 C 0.323 3.677 21 O -0.471 6.471 22 C -0.216 4.216 23 H 0.167 0.833 24 C -0.175 4.175 25 C -0.151 4.151 26 H 0.109 0.891 27 C -0.176 4.176 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.163 0.837 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.253 0.747 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.949 1.400 -27.763 27.866 hybrid contribution 0.931 0.240 1.320 1.633 sum -1.018 1.640 -26.443 26.514 Atomic orbital electron populations 1.21702 0.93798 1.01888 1.01934 1.21196 0.97331 1.00055 0.91949 0.89732 1.21971 0.98161 0.97831 0.88356 1.60028 1.64669 1.05943 1.00240 1.21528 0.99085 0.98054 0.88137 1.20873 0.83868 0.87620 0.85064 1.90484 1.45530 1.28335 1.86502 1.41949 1.50070 1.24339 1.04781 1.19722 1.34385 1.06971 0.85313 0.90245 1.26051 0.96436 0.97582 1.01241 1.69681 1.38987 1.22517 1.24991 0.84852 0.78213 0.77969 0.77187 1.19738 1.19664 1.19602 1.21248 0.99525 0.95200 0.83406 1.45855 1.57230 1.28212 1.04989 1.20252 0.77970 0.84521 0.84970 1.90680 1.42225 1.26853 1.87379 1.22388 1.08948 1.01039 0.89210 0.83274 1.23206 0.91958 1.02361 0.99926 1.22415 0.98221 1.01127 0.93337 0.89073 1.21399 1.02292 0.97551 0.96390 0.92750 0.91622 0.93159 0.90405 0.94153 0.83657 0.87947 0.91668 0.77002 0.91317 0.92134 0.92066 0.74724 0.89435 0.85093 0.91910 0.91277 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.95 71.98 0.64 -1.89 16 2 C -0.09 -1.53 2.57 -10.79 -0.03 -1.56 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.07 1.44 5.07 86.31 0.44 1.88 16 5 N -0.68 -20.22 5.58 -517.92 -2.89 -23.11 16 6 C 0.06 2.17 6.17 85.56 0.53 2.70 16 7 C 0.44 20.74 7.82 87.66 0.69 21.43 16 8 O -0.62 -34.19 15.78 -3.05 -0.05 -34.24 16 9 N -0.57 -29.51 5.29 -306.98 -1.62 -31.14 16 10 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.92 -49.80 13.05 21.66 0.28 -49.51 16 14 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 C 0.13 2.36 5.06 86.38 0.44 2.80 16 19 N -0.71 -11.17 5.28 -463.05 -2.45 -13.61 16 20 C 0.53 10.68 7.61 87.66 0.67 11.35 16 21 O -0.59 -17.24 16.26 -3.02 -0.05 -17.29 16 22 C -0.20 -2.51 5.91 -11.54 -0.07 -2.58 16 23 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 24 C -0.14 -1.47 9.88 30.62 0.30 -1.17 16 25 C -0.13 -1.77 5.92 -10.77 -0.06 -1.83 16 26 H 0.09 1.70 7.67 -2.39 -0.02 1.68 16 27 C -0.12 -0.99 10.19 71.98 0.73 -0.26 16 28 H 0.05 1.30 7.75 -2.38 -0.02 1.28 16 29 H 0.06 0.93 7.18 -2.39 -0.02 0.92 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.34 10.73 8.43 -89.69 -0.76 9.98 16 34 H 0.10 3.16 8.14 -2.38 -0.02 3.14 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 37 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.42 4.27 7.66 -92.71 -0.71 3.56 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 43 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.39 7.90 -2.39 -0.02 0.37 16 Total: -1.00 -72.71 378.16 -0.38 -73.09 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -1.19 Total: 38.48 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 5.56 Total: 12.38 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -6.68 Total: -117.37 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.10 Total: -51.53 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -72.71 -0.38 -73.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.692 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds