Wall clock time and date at job start Tue Mar 31 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47201 * 2 1 4 4 C 1.46503 * 119.99964 * 90.00447 * 3 2 1 5 5 C 1.50693 * 109.47408 * 90.00006 * 4 3 2 6 6 H 1.08007 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00018 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99823 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00146 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47051 * 90.00129 * 9 7 5 11 11 H 1.48502 * 109.47057 * 209.99875 * 9 7 5 12 12 H 1.48494 * 109.47094 * 330.00277 * 9 7 5 13 13 C 1.34778 * 120.00175 * 270.00174 * 3 2 1 14 14 O 1.21284 * 120.00044 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99924 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47169 * 179.97438 * 15 13 3 17 17 C 1.47836 * 111.00264 * 285.31490 * 16 15 13 18 18 C 1.54908 * 104.79875 * 213.63460 * 17 16 15 19 19 C 1.55146 * 101.64788 * 37.07002 * 18 17 16 20 20 C 1.47450 * 110.99907 * 164.46920 * 16 15 13 21 21 H 1.08995 * 109.88712 * 242.66538 * 20 16 15 22 22 C 1.50699 * 109.88557 * 3.69194 * 20 16 15 23 23 O 1.21281 * 120.00411 * 50.27818 * 22 20 16 24 24 N 1.34782 * 119.99853 * 230.27046 * 22 20 16 25 25 C 1.46497 * 119.99940 * 180.02562 * 24 22 20 26 26 H 1.08997 * 109.47148 * 59.99700 * 1 2 3 27 27 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46969 * 300.00065 * 1 2 3 29 29 H 1.08997 * 109.47148 * 120.00300 * 2 1 3 30 30 H 1.08996 * 109.46978 * 240.00052 * 2 1 3 31 31 H 1.08998 * 109.46922 * 210.00040 * 4 3 2 32 32 H 1.08998 * 109.46998 * 329.99454 * 4 3 2 33 33 H 0.96998 * 120.00005 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47244 * 299.99906 * 15 13 3 35 35 H 1.09000 * 109.46989 * 60.00017 * 15 13 3 36 36 H 1.09004 * 110.37673 * 332.46352 * 17 16 15 37 37 H 1.09003 * 110.37777 * 94.80567 * 17 16 15 38 38 H 1.08994 * 110.99027 * 278.98206 * 18 17 16 39 39 H 1.08996 * 111.02735 * 155.17178 * 18 17 16 40 40 H 1.09004 * 110.69840 * 205.96442 * 19 18 17 41 41 H 1.09000 * 110.70810 * 82.73401 * 19 18 17 42 42 H 0.97000 * 119.99504 * 0.02562 * 24 22 20 43 43 H 1.08997 * 109.47448 * 300.00097 * 25 24 22 44 44 H 1.09005 * 109.46962 * 60.00279 * 25 24 22 45 45 H 1.09003 * 109.46814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6858 1.8350 1.7037 6 1 4.3427 1.2302 1.0961 7 6 4.1492 2.3896 2.8779 8 7 5.3912 2.1825 3.2578 9 14 3.0129 3.4350 3.9292 10 1 2.3072 2.5687 4.9075 11 1 3.8105 4.4550 4.6564 12 1 2.0178 4.1123 3.0597 13 6 2.2429 2.0166 -1.1672 14 8 2.6468 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3089 2.2066 -3.5888 17 6 1.2610 3.2362 -3.7541 18 6 1.1992 3.4967 -5.2798 19 6 1.4308 2.0726 -5.8503 20 6 2.4343 1.4573 -4.8525 21 1 3.4484 1.5518 -5.2406 22 6 2.1073 0.0044 -4.6215 23 8 1.0856 -0.3030 -4.0448 24 7 2.9502 -0.9534 -5.0560 25 6 2.6320 -2.3657 -4.8320 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0956 3.1410 1.1384 32 1 1.5818 1.6877 2.0284 33 1 5.7173 2.5729 4.0836 34 1 2.6210 0.4187 -2.5303 35 1 0.9431 1.0127 -2.5298 36 1 0.3022 2.8632 -3.3937 37 1 1.5377 4.1479 -3.2244 38 1 1.9921 4.1761 -5.5924 39 1 0.2216 3.8800 -5.5719 40 1 1.8630 2.1235 -6.8497 41 1 0.5001 1.5053 -5.8602 42 1 3.7674 -0.7074 -5.5171 43 1 2.5487 -2.5541 -3.7616 44 1 1.6866 -2.6067 -5.3180 45 1 3.4239 -2.9872 -5.2501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049238464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:10 Heat of formation + Delta-G solvation = -47.348548 kcal Electronic energy + Delta-G solvation = -25735.343818 eV Core-core repulsion = 22174.659891 eV Total energy + Delta-G solvation = -3560.683927 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92433 -38.88345 -37.58160 -35.18447 -34.83135 -32.75895 -32.05641 -30.22769 -29.96999 -28.13460 -26.77115 -25.90980 -22.85579 -22.44394 -21.97009 -21.29719 -20.20556 -18.52520 -17.33190 -16.93132 -16.81808 -16.12132 -15.58638 -15.38777 -15.07110 -14.90496 -14.70685 -14.11450 -13.77716 -13.45232 -13.34753 -13.06267 -12.96542 -12.54888 -12.42627 -12.32755 -12.25325 -11.99664 -11.75425 -11.68960 -11.40725 -11.24825 -11.14363 -10.89618 -10.85547 -10.61635 -10.39323 -10.10527 -10.02070 -9.46366 -9.38192 -8.87942 -8.52601 -8.10954 -7.57542 -6.02187 -3.99862 2.33085 2.97717 3.31656 3.39351 3.44970 3.51451 3.68658 4.23691 4.35019 4.45957 4.53863 4.63394 4.94591 5.02465 5.15159 5.21475 5.26583 5.32345 5.35244 5.40757 5.54332 5.56034 5.59197 5.65825 5.68789 5.75805 5.79769 5.89631 6.06327 6.13798 6.16494 6.21027 6.25251 6.51719 6.72798 6.89491 6.94770 7.09001 7.20566 7.49844 7.69637 7.97152 8.40325 8.55626 9.01410 9.16834 9.58993 11.11463 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.004469 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.607316 B = 6264.059377 C = 6797.241015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.524 4.524 6 H 0.073 0.927 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.508 3.492 14 O -0.526 6.526 15 C 0.030 3.970 16 N -0.484 5.484 17 C 0.045 3.955 18 C -0.126 4.126 19 C -0.126 4.126 20 C 0.053 3.947 21 H 0.103 0.897 22 C 0.501 3.499 23 O -0.535 6.535 24 N -0.732 5.732 25 C 0.085 3.915 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.404 0.596 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 -6.666 -20.071 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.015 4.015 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.563 4.563 6 H 0.091 0.909 7 C -0.131 4.131 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.294 3.706 14 O -0.401 6.401 15 C -0.101 4.101 16 N -0.209 5.209 17 C -0.082 4.082 18 C -0.164 4.164 19 C -0.165 4.165 20 C -0.058 4.058 21 H 0.121 0.879 22 C 0.287 3.713 23 O -0.411 6.411 24 N -0.384 5.384 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.237 0.763 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.765 -6.012 -19.350 22.077 hybrid contribution -0.641 -0.104 0.366 0.745 sum -9.406 -6.116 -18.984 22.051 Atomic orbital electron populations 1.22194 0.96799 1.01501 1.02001 1.21391 0.93443 0.83975 1.02732 1.47912 1.64670 1.13349 1.06925 1.19606 0.96977 0.93589 0.80116 1.21353 0.95446 1.32536 1.06945 0.90852 1.24853 0.95016 0.95815 0.97371 1.69905 1.15211 1.45214 1.23525 0.86861 0.81323 0.80893 0.80761 1.20177 1.20991 1.18851 1.20282 0.78401 0.87126 0.84818 1.90639 1.44535 1.17965 1.87000 1.22628 1.02375 0.94956 0.90155 1.63728 1.45281 1.11300 1.00592 1.23174 0.92695 0.96605 0.95727 1.22722 1.02419 0.96056 0.95233 1.22735 0.98816 0.96856 0.98113 1.22730 1.01664 0.88558 0.92876 0.87913 1.21262 0.83454 0.88420 0.78205 1.90709 1.26093 1.83469 1.40855 1.45946 1.25402 1.06869 1.60225 1.21559 1.01356 0.80738 1.02218 0.92987 0.92120 0.92391 0.89945 0.91740 0.94234 0.95871 0.92669 0.89385 0.89432 0.93518 0.88555 0.90189 0.90489 0.90143 0.90646 0.76262 0.91971 0.92282 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.11 1.92 5.93 -4.04 -0.02 1.89 16 3 N -0.60 -13.19 2.46 -175.07 -0.43 -13.62 16 4 C 0.22 5.59 4.23 -5.20 -0.02 5.57 16 5 C -0.52 -15.60 9.94 -34.44 -0.34 -15.95 16 6 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 9 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 13 C 0.51 11.26 7.52 -10.99 -0.08 11.17 16 14 O -0.53 -13.60 15.05 5.55 0.08 -13.52 16 15 C 0.03 0.52 2.44 -4.98 -0.01 0.51 16 16 N -0.48 -7.62 4.76 -226.16 -1.08 -8.70 16 17 C 0.05 0.65 5.96 -2.30 -0.01 0.64 16 18 C -0.13 -1.29 7.08 -24.59 -0.17 -1.46 16 19 C -0.13 -1.20 6.46 -24.91 -0.16 -1.36 16 20 C 0.05 0.62 3.83 -67.88 -0.26 0.36 16 21 H 0.10 1.00 7.96 -51.93 -0.41 0.58 16 22 C 0.50 6.02 4.89 -10.98 -0.05 5.96 16 23 O -0.53 -8.03 13.77 5.56 0.08 -7.95 16 24 N -0.73 -6.44 5.71 -67.08 -0.38 -6.82 16 25 C 0.09 0.66 10.70 59.85 0.64 1.30 16 26 H 0.05 0.78 7.22 -51.93 -0.37 0.40 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 30 H 0.06 1.05 6.44 -51.93 -0.33 0.71 16 31 H 0.04 1.09 6.48 -51.93 -0.34 0.75 16 32 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.09 1.53 5.76 -51.93 -0.30 1.23 16 35 H 0.09 1.52 5.10 -51.93 -0.27 1.25 16 36 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 37 H 0.10 1.57 7.66 -51.93 -0.40 1.17 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.77 7.76 -51.93 -0.40 0.37 16 42 H 0.40 2.42 8.70 -40.82 -0.36 2.07 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -37.06 356.32 -7.83 -44.89 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.35 Total: 1.88 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.22 Total: 8.58 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.12 Total: -56.76 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.16 Total: -21.47 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.06 -7.83 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049238464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.455 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds