Wall clock time and date at job start Tue Mar 31 2020 03:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47201 * 2 1 4 4 C 1.46503 * 119.99964 * 90.00447 * 3 2 1 5 5 C 1.50693 * 109.47408 * 90.00006 * 4 3 2 6 6 H 1.08007 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00018 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99823 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00146 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.47051 * 90.00129 * 9 7 5 11 11 H 1.48502 * 109.47057 * 209.99875 * 9 7 5 12 12 H 1.48494 * 109.47094 * 330.00277 * 9 7 5 13 13 C 1.34778 * 120.00175 * 270.00174 * 3 2 1 14 14 O 1.21284 * 120.00044 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99924 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47169 * 179.97438 * 15 13 3 17 17 C 1.47836 * 111.00264 * 285.31490 * 16 15 13 18 18 C 1.54908 * 104.79875 * 213.63460 * 17 16 15 19 19 C 1.55146 * 101.64788 * 37.07002 * 18 17 16 20 20 C 1.47450 * 110.99907 * 164.46920 * 16 15 13 21 21 H 1.08995 * 109.88712 * 242.66538 * 20 16 15 22 22 C 1.50699 * 109.88557 * 3.69194 * 20 16 15 23 23 O 1.21281 * 120.00411 * 50.27818 * 22 20 16 24 24 N 1.34782 * 119.99853 * 230.27046 * 22 20 16 25 25 C 1.46497 * 119.99940 * 180.02562 * 24 22 20 26 26 H 1.08997 * 109.47148 * 59.99700 * 1 2 3 27 27 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46969 * 300.00065 * 1 2 3 29 29 H 1.08997 * 109.47148 * 120.00300 * 2 1 3 30 30 H 1.08996 * 109.46978 * 240.00052 * 2 1 3 31 31 H 1.08998 * 109.46922 * 210.00040 * 4 3 2 32 32 H 1.08998 * 109.46998 * 329.99454 * 4 3 2 33 33 H 0.96998 * 120.00005 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.47244 * 299.99906 * 15 13 3 35 35 H 1.09000 * 109.46989 * 60.00017 * 15 13 3 36 36 H 1.09004 * 110.37673 * 332.46352 * 17 16 15 37 37 H 1.09003 * 110.37777 * 94.80567 * 17 16 15 38 38 H 1.08994 * 110.99027 * 278.98206 * 18 17 16 39 39 H 1.08996 * 111.02735 * 155.17178 * 18 17 16 40 40 H 1.09004 * 110.69840 * 205.96442 * 19 18 17 41 41 H 1.09000 * 110.70810 * 82.73401 * 19 18 17 42 42 H 0.97000 * 119.99504 * 0.02562 * 24 22 20 43 43 H 1.08997 * 109.47448 * 300.00097 * 25 24 22 44 44 H 1.09005 * 109.46962 * 60.00279 * 25 24 22 45 45 H 1.09003 * 109.46814 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 1.2688 5 6 3.6858 1.8350 1.7037 6 1 4.3427 1.2302 1.0961 7 6 4.1492 2.3896 2.8779 8 7 5.3912 2.1825 3.2578 9 14 3.0129 3.4350 3.9292 10 1 2.3072 2.5687 4.9075 11 1 3.8105 4.4550 4.6564 12 1 2.0178 4.1123 3.0597 13 6 2.2429 2.0166 -1.1672 14 8 2.6468 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3089 2.2066 -3.5888 17 6 1.2610 3.2362 -3.7541 18 6 1.1992 3.4967 -5.2798 19 6 1.4308 2.0726 -5.8503 20 6 2.4343 1.4573 -4.8525 21 1 3.4484 1.5518 -5.2406 22 6 2.1073 0.0044 -4.6215 23 8 1.0856 -0.3030 -4.0448 24 7 2.9502 -0.9534 -5.0560 25 6 2.6320 -2.3657 -4.8320 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.0956 3.1410 1.1384 32 1 1.5818 1.6877 2.0284 33 1 5.7173 2.5729 4.0836 34 1 2.6210 0.4187 -2.5303 35 1 0.9431 1.0127 -2.5298 36 1 0.3022 2.8632 -3.3937 37 1 1.5377 4.1479 -3.2244 38 1 1.9921 4.1761 -5.5924 39 1 0.2216 3.8800 -5.5719 40 1 1.8630 2.1235 -6.8497 41 1 0.5001 1.5053 -5.8602 42 1 3.7674 -0.7074 -5.5171 43 1 2.5487 -2.5541 -3.7616 44 1 1.6866 -2.6067 -5.3180 45 1 3.4239 -2.9872 -5.2501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049238464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:10 Heat of formation + Delta-G solvation = -77.069815 kcal Electronic energy + Delta-G solvation = -25736.632629 eV Core-core repulsion = 22174.659891 eV Total energy + Delta-G solvation = -3561.972738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98345 -40.47711 -38.63660 -36.94457 -35.67368 -34.89879 -33.33461 -31.87334 -30.90775 -29.90871 -27.62637 -27.35488 -24.49146 -24.02638 -23.07884 -22.30395 -21.14329 -20.09579 -19.11823 -18.45209 -18.26110 -17.27798 -17.01625 -16.63748 -16.31683 -16.05758 -15.97353 -15.87719 -14.85750 -14.77750 -14.71558 -14.57135 -14.31675 -14.07366 -13.69761 -13.46107 -13.44421 -13.20987 -13.10054 -12.99962 -12.85820 -12.63399 -12.43128 -12.38523 -12.09255 -12.04186 -11.90193 -11.77213 -11.74652 -11.06500 -10.82786 -10.63285 -10.15864 -9.46989 -9.28179 -8.34818 -6.39759 1.30471 1.34959 1.39749 1.46479 1.78157 2.16568 2.22491 2.30770 2.95743 2.99751 3.46989 3.57316 3.75513 3.85398 4.00662 4.13008 4.19257 4.30386 4.31250 4.40543 4.45952 4.50312 4.54704 4.63435 4.71937 4.79484 4.87793 4.88101 4.89909 4.95454 4.96209 4.99251 5.08861 5.25507 5.28472 5.40874 5.45122 5.60853 5.74853 5.84502 6.24193 6.47140 6.60398 6.68062 7.15405 7.20747 7.43129 8.82421 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.004469 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.607316 B = 6264.059377 C = 6797.241015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.536 4.536 6 H 0.026 0.974 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.250 1.250 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.496 3.504 14 O -0.572 6.572 15 C 0.056 3.944 16 N -0.510 5.510 17 C 0.041 3.959 18 C -0.115 4.115 19 C -0.116 4.116 20 C 0.049 3.951 21 H 0.125 0.875 22 C 0.496 3.504 23 O -0.570 6.570 24 N -0.719 5.719 25 C 0.082 3.918 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.019 0.981 32 H 0.046 0.954 33 H 0.269 0.731 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.419 0.581 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 -7.333 -21.575 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.018 4.018 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.574 4.574 6 H 0.044 0.956 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.174 1.174 11 H -0.204 1.204 12 H -0.182 1.182 13 C 0.284 3.716 14 O -0.452 6.452 15 C -0.074 4.074 16 N -0.235 5.235 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.062 4.062 21 H 0.143 0.857 22 C 0.282 3.718 23 O -0.449 6.449 24 N -0.371 5.371 25 C -0.061 4.061 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.255 0.745 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.234 -6.740 -20.898 24.226 hybrid contribution -0.054 0.022 0.762 0.764 sum -10.289 -6.718 -20.136 23.589 Atomic orbital electron populations 1.22096 0.94087 1.03449 1.01720 1.21638 0.95570 0.81479 1.03125 1.48052 1.64551 1.14977 1.05947 1.19276 0.94831 0.93010 0.82316 1.21527 0.96983 1.32150 1.06754 0.95582 1.25840 0.96787 0.97067 0.98838 1.70053 1.17418 1.46556 1.24456 0.85698 0.79107 0.79137 0.78947 1.17433 1.20436 1.18234 1.21241 0.77175 0.86847 0.86302 1.90599 1.46621 1.20102 1.87831 1.22334 1.02434 0.94285 0.88388 1.63631 1.45981 1.11994 1.01856 1.23136 0.91746 0.95074 0.98709 1.22701 1.03916 0.96977 0.91716 1.22732 0.98115 0.95532 0.99057 1.22924 1.03629 0.88224 0.91438 0.85711 1.21340 0.83385 0.89021 0.78046 1.90685 1.27626 1.83929 1.42684 1.45895 1.25236 1.06952 1.59041 1.21689 1.02699 0.80351 1.01411 0.93198 0.89008 0.92688 0.90467 0.90451 0.96302 0.93619 0.92210 0.89335 0.88981 0.94398 0.91583 0.89341 0.88543 0.86654 0.91297 0.74476 0.93638 0.92436 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.36 10.24 71.98 0.74 -3.63 16 2 C 0.10 3.66 5.93 86.38 0.51 4.17 16 3 N -0.60 -27.31 2.46 -826.18 -2.03 -29.34 16 4 C 0.23 11.90 4.23 85.63 0.36 12.26 16 5 C -0.54 -33.04 9.94 25.60 0.25 -32.79 16 6 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 7 C 0.01 0.77 5.47 84.65 0.46 1.23 16 8 N -0.94 -61.16 13.96 21.45 0.30 -60.86 16 9 Si 0.95 45.95 27.47 68.60 1.88 47.83 16 10 H -0.25 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.26 -12.19 6.54 99.48 0.65 -11.54 16 13 C 0.50 22.75 7.52 87.66 0.66 23.41 16 14 O -0.57 -31.04 15.05 -3.04 -0.05 -31.09 16 15 C 0.06 2.00 2.44 85.56 0.21 2.21 16 16 N -0.51 -16.00 4.76 -869.44 -4.14 -20.14 16 17 C 0.04 1.18 5.96 86.78 0.52 1.70 16 18 C -0.12 -2.13 7.08 31.98 0.23 -1.90 16 19 C -0.12 -1.87 6.46 31.77 0.21 -1.66 16 20 C 0.05 1.04 3.83 44.51 0.17 1.21 16 21 H 0.13 2.09 7.96 -2.39 -0.02 2.07 16 22 C 0.50 11.13 4.89 87.66 0.43 11.56 16 23 O -0.57 -16.52 13.77 -3.03 -0.04 -16.56 16 24 N -0.72 -11.05 5.71 -484.52 -2.77 -13.82 16 25 C 0.08 1.10 10.70 127.77 1.37 2.47 16 26 H 0.05 1.43 7.22 -2.39 -0.02 1.41 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 30 H 0.08 2.49 6.44 -2.39 -0.02 2.48 16 31 H 0.02 1.06 6.48 -2.39 -0.02 1.05 16 32 H 0.05 2.17 7.50 -2.39 -0.02 2.16 16 33 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 34 H 0.09 3.09 5.76 -2.39 -0.01 3.08 16 35 H 0.09 3.20 5.10 -2.39 -0.01 3.19 16 36 H 0.04 1.14 7.53 -2.38 -0.02 1.12 16 37 H 0.07 2.28 7.66 -2.39 -0.02 2.26 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.07 1.24 7.76 -2.39 -0.02 1.22 16 42 H 0.42 3.83 8.70 -92.71 -0.81 3.03 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -84.84 356.32 -0.61 -85.45 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.12 Total: 18.29 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 6.11 Total: 20.23 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -8.64 Total: -124.16 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.09 Total: -47.65 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -84.84 -0.61 -85.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049238464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.380 kcal (2) G-P(sol) polarization free energy of solvation -84.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds