Wall clock time and date at job start Tue Mar 31 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47335 * 2 1 4 4 C 1.46497 * 120.00344 * 270.00190 * 3 2 1 5 5 C 1.50706 * 109.47449 * 270.00267 * 4 3 2 6 6 H 1.08008 * 119.99387 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00424 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99968 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47164 * 60.00097 * 9 7 5 11 11 H 1.48503 * 109.46955 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47155 * 299.99862 * 9 7 5 13 13 C 1.34774 * 119.99927 * 90.00414 * 3 2 1 14 14 O 1.21281 * 120.00103 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99959 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.46785 * 180.02562 * 15 13 3 17 17 C 1.46895 * 111.00320 * 66.04678 * 16 15 13 18 18 C 1.46906 * 110.99414 * 189.99877 * 16 15 13 19 19 C 1.50706 * 109.46621 * 169.99902 * 18 16 15 20 20 O 1.21275 * 120.00404 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99413 * 180.02562 * 19 18 16 22 22 C 1.46506 * 119.99461 * 180.02562 * 21 19 18 23 23 C 1.53001 * 117.49681 * 223.62047 * 22 21 19 24 24 C 1.52999 * 59.99986 * 252.51359 * 23 22 21 25 25 H 1.09000 * 109.46924 * 59.99708 * 1 2 3 26 26 H 1.08994 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46671 * 300.00119 * 1 2 3 28 28 H 1.09005 * 109.46873 * 240.00320 * 2 1 3 29 29 H 1.08994 * 109.47331 * 120.00231 * 2 1 3 30 30 H 1.09007 * 109.46872 * 29.99683 * 4 3 2 31 31 H 1.08998 * 109.47748 * 150.00088 * 4 3 2 32 32 H 0.96999 * 119.99617 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47185 * 60.00568 * 15 13 3 34 34 H 1.09000 * 109.47177 * 300.00199 * 15 13 3 35 35 H 1.08997 * 109.47620 * 183.94621 * 17 16 15 36 36 H 1.09004 * 109.47426 * 303.95438 * 17 16 15 37 37 H 1.09005 * 109.47346 * 63.94838 * 17 16 15 38 38 H 1.08994 * 109.47337 * 50.00393 * 18 16 15 39 39 H 1.08994 * 109.47267 * 290.00018 * 18 16 15 40 40 H 0.96995 * 120.00725 * 0.02562 * 21 19 18 41 41 H 1.08998 * 115.55053 * 9.32545 * 22 21 19 42 42 H 1.09004 * 117.49834 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.49999 * 145.01929 * 23 22 21 44 44 H 1.08998 * 117.49443 * 252.51298 * 24 23 22 45 45 H 1.08998 * 117.52032 * 107.48340 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1491 2.3896 -2.8780 8 7 3.3488 3.1250 -3.6185 9 14 5.9135 2.0966 -3.4169 10 1 6.1417 0.6399 -3.5938 11 1 6.1610 2.7966 -4.7030 12 1 6.8408 2.6208 -2.3822 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3093 2.2064 3.5889 17 6 1.3828 3.3457 3.6267 18 6 2.3051 1.4817 4.8667 19 6 2.8695 2.3670 5.9479 20 8 3.2384 3.4909 5.6805 21 7 2.9643 1.9096 7.2122 22 6 3.5124 2.7704 8.2634 23 6 4.5034 2.1423 9.2454 24 6 3.0847 2.4852 9.7044 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0956 3.1411 -1.1384 32 1 3.6749 3.5155 -4.4444 33 1 2.6213 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 1.6829 4.0320 4.4186 36 1 1.4055 3.8645 2.6684 37 1 0.3724 2.9861 3.8213 38 1 2.9159 0.5835 4.7771 39 1 1.2832 1.2022 5.1226 40 1 2.6697 1.0106 7.4261 41 1 3.6729 3.8113 7.9825 42 1 4.7472 1.0886 9.1097 43 1 5.3161 2.7700 9.6108 44 1 2.9641 3.3385 10.3718 45 1 2.3952 1.6575 9.8703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051857055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:52 Heat of formation + Delta-G solvation = -54.344486 kcal Electronic energy + Delta-G solvation = -24285.508938 eV Core-core repulsion = 20724.521645 eV Total energy + Delta-G solvation = -3560.987293 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16265 -40.54784 -38.32023 -37.31774 -36.63437 -34.88427 -33.88173 -31.62424 -30.40840 -29.14125 -28.29267 -25.38772 -24.41955 -23.64888 -23.25054 -22.40219 -21.52207 -19.88802 -18.62914 -18.27576 -17.99657 -17.32638 -17.08756 -16.79990 -16.39105 -16.22532 -15.70391 -15.24710 -15.23057 -15.15594 -14.62838 -14.37161 -14.31127 -13.78043 -13.59764 -13.55812 -13.25976 -13.12390 -12.91797 -12.78349 -12.62758 -12.51802 -12.47978 -12.41549 -12.19769 -12.12207 -11.80186 -11.70251 -11.45664 -10.93004 -10.63297 -10.40640 -9.71497 -9.40078 -9.18408 -8.21032 -6.35697 1.35502 1.41161 1.47808 1.61447 1.90219 1.93394 2.33490 2.46286 3.00940 3.07211 3.08559 3.73322 3.75938 3.86247 4.07847 4.09443 4.12967 4.21238 4.29608 4.37350 4.43320 4.48316 4.57029 4.63673 4.70016 4.77905 4.84411 4.97396 5.02547 5.03992 5.08532 5.20683 5.22383 5.24620 5.42741 5.56824 5.60653 5.86406 5.95540 5.99213 6.09320 6.61219 6.72996 6.88563 7.30923 7.33788 7.60455 8.85685 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.003048 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.994760 B = 9183.644972 C = 9949.696306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.492 3.508 14 O -0.583 6.583 15 C 0.055 3.945 16 N -0.542 5.542 17 C 0.029 3.971 18 C 0.042 3.958 19 C 0.511 3.489 20 O -0.570 6.570 21 N -0.689 5.689 22 C 0.049 3.951 23 C -0.187 4.187 24 C -0.168 4.168 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.022 0.978 31 H -0.009 1.009 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.419 0.581 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -13.243 25.428 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.281 3.719 14 O -0.463 6.463 15 C -0.075 4.075 16 N -0.267 5.267 17 C -0.119 4.119 18 C -0.088 4.088 19 C 0.298 3.702 20 O -0.448 6.448 21 N -0.342 5.342 22 C -0.057 4.057 23 C -0.225 4.225 24 C -0.206 4.206 25 H 0.053 0.947 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.039 0.961 31 H 0.009 0.991 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.257 0.743 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.552 -11.583 24.957 28.069 hybrid contribution 0.090 0.060 -0.710 0.718 sum -5.462 -11.523 24.248 27.396 Atomic orbital electron populations 1.22154 0.94671 1.03502 1.01513 1.21770 0.95207 0.81215 1.04112 1.48296 1.64291 1.15261 1.05995 1.18633 0.95151 0.91313 0.80624 1.21706 0.97982 1.31903 1.06334 0.92882 1.25878 1.02406 0.94538 0.96526 1.70051 1.37811 1.34327 1.14821 0.85481 0.79011 0.79165 0.77227 1.18096 1.20349 1.20665 1.21294 0.77412 0.86737 0.86506 1.90645 1.47052 1.20848 1.87724 1.22036 1.03179 0.95457 0.86848 1.61044 1.54094 1.09317 1.02214 1.22426 0.92700 0.94069 1.02733 1.22107 1.03472 0.96448 0.86823 1.21060 0.77672 0.87640 0.83846 1.90713 1.49436 1.22422 1.82249 1.45183 1.64153 1.18219 1.06615 1.21553 1.03636 0.95622 0.84870 1.23490 0.93873 1.02804 1.02364 1.23453 0.97805 1.04683 0.94673 0.94702 0.88419 0.92130 0.91146 0.87624 0.96052 0.99108 0.92478 0.85127 0.88689 0.91462 0.93296 0.94044 0.84567 0.88010 0.74332 0.87537 0.87277 0.87958 0.87341 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.61 -25.91 2.46 -826.15 -2.03 -27.94 16 4 C 0.26 14.73 5.16 85.64 0.44 15.17 16 5 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 9 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 13 C 0.49 21.06 7.37 87.66 0.65 21.70 16 14 O -0.58 -32.34 13.91 -3.03 -0.04 -32.38 16 15 C 0.05 1.50 4.00 85.56 0.34 1.84 16 16 N -0.54 -16.37 4.24 -931.63 -3.95 -20.32 16 17 C 0.03 0.95 8.85 127.69 1.13 2.08 16 18 C 0.04 0.75 5.45 85.56 0.47 1.22 16 19 C 0.51 12.03 7.55 87.66 0.66 12.69 16 20 O -0.57 -20.49 13.88 -3.01 -0.04 -20.53 16 21 N -0.69 -10.33 5.57 -442.52 -2.46 -12.79 16 22 C 0.05 0.80 6.43 44.99 0.29 1.09 16 23 C -0.19 -2.07 10.46 30.59 0.32 -1.75 16 24 C -0.17 -1.55 10.45 30.59 0.32 -1.23 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 28 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 29 H 0.11 2.16 6.44 -2.39 -0.02 2.14 16 30 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 31 H -0.01 -0.60 7.42 -2.39 -0.02 -0.62 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.13 2.70 7.19 -2.39 -0.02 2.68 16 34 H 0.10 1.90 7.16 -2.39 -0.02 1.88 16 35 H 0.07 2.42 5.88 -2.39 -0.01 2.41 16 36 H 0.05 2.05 5.82 -2.38 -0.01 2.04 16 37 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.14 1.60 7.93 -2.39 -0.02 1.58 16 39 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 40 H 0.42 2.82 8.83 -92.71 -0.82 2.00 16 41 H 0.11 2.40 7.40 -2.39 -0.02 2.39 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -90.39 369.61 0.52 -89.87 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.17 Total: 11.41 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.57 Total: 22.05 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -8.16 Total: -118.88 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.08 Total: -52.91 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -90.39 0.52 -89.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051857055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.525 kcal (2) G-P(sol) polarization free energy of solvation -90.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds