Wall clock time and date at job start Tue Mar 31 2020 03:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99593 * 2 1 4 4 N 1.34776 * 120.00654 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00342 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47060 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.50687 * 54.92631 * 6 5 4 8 8 C 1.53120 * 109.50540 * 294.80413 * 6 5 4 9 9 C 1.53121 * 109.15659 * 182.40597 * 8 6 5 10 10 C 1.53034 * 109.28457 * 57.65499 * 9 8 6 11 11 N 1.46850 * 109.51902 * 300.82046 * 10 9 8 12 12 C 1.46902 * 110.99331 * 185.83612 * 11 10 9 13 13 C 1.50707 * 109.46855 * 169.43257 * 12 11 10 14 14 O 1.21279 * 119.99591 * 353.78027 * 13 12 11 15 15 N 1.34770 * 120.00259 * 173.78609 * 13 12 11 16 16 C 1.46502 * 120.00244 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47080 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00249 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99674 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00148 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99853 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47298 * 60.00458 * 21 19 17 23 23 H 1.48498 * 109.47367 * 180.02562 * 21 19 17 24 24 H 1.48509 * 109.47267 * 300.00246 * 21 19 17 25 25 C 1.46841 * 111.19861 * 61.74346 * 11 10 9 26 26 H 1.09006 * 109.46797 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47122 * 299.99315 * 1 2 3 28 28 H 1.09002 * 109.47307 * 59.99953 * 1 2 3 29 29 H 0.97001 * 119.99711 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.47014 * 59.99616 * 5 4 2 31 31 H 1.09000 * 109.46968 * 300.00051 * 5 4 2 32 32 H 1.09000 * 109.52284 * 302.30392 * 8 6 5 33 33 H 1.08998 * 109.52279 * 62.50462 * 8 6 5 34 34 H 1.09003 * 109.49964 * 177.60014 * 9 8 6 35 35 H 1.08998 * 109.50406 * 297.70957 * 9 8 6 36 36 H 1.09002 * 109.45844 * 60.82911 * 10 9 8 37 37 H 1.08998 * 109.46427 * 180.81186 * 10 9 8 38 38 H 1.09003 * 109.47328 * 289.42735 * 12 11 10 39 39 H 1.08999 * 109.47339 * 49.43514 * 12 11 10 40 40 H 0.97006 * 119.99878 * 359.97438 * 15 13 12 41 41 H 1.09005 * 109.46636 * 299.99507 * 16 15 13 42 42 H 1.08998 * 109.46877 * 59.99291 * 16 15 13 43 43 H 0.96998 * 119.99992 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.45948 * 178.24061 * 25 11 10 45 45 H 1.08998 * 109.46669 * 58.27228 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6460 -1.1670 -0.0011 6 6 4.1560 -2.6095 -0.0010 7 1 3.7204 -3.1496 -0.8416 8 6 3.7561 -3.2930 1.3095 9 6 4.3216 -4.7159 1.3270 10 6 5.8420 -4.6575 1.1622 11 7 6.1730 -3.9956 -0.1062 12 6 7.6184 -4.0446 -0.3639 13 6 7.8923 -3.5952 -1.7761 14 8 6.9698 -3.3749 -2.5320 15 7 9.1623 -3.4383 -2.1990 16 6 9.4286 -3.0010 -3.5716 17 6 10.9168 -2.9044 -3.7882 18 1 11.5963 -3.1450 -2.9841 19 6 11.4108 -2.5097 -5.0134 20 7 10.5834 -2.2171 -5.9928 21 14 13.2555 -2.3905 -5.2822 22 1 13.8755 -3.7210 -5.0572 23 1 13.5255 -1.9471 -6.6735 24 1 13.8322 -1.4081 -4.3294 25 6 5.6812 -2.6121 -0.1273 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6960 -2.0072 -0.0005 30 1 4.0096 -0.6533 0.8888 31 1 4.0089 -0.6530 -0.8911 32 1 4.1593 -2.7305 2.1516 33 1 2.6693 -3.3321 1.3831 34 1 4.0765 -5.1932 2.2758 35 1 3.8886 -5.2897 0.5078 36 1 6.2755 -4.0952 1.9892 37 1 6.2462 -5.6698 1.1598 38 1 8.1344 -3.3849 0.3338 39 1 7.9767 -5.0654 -0.2315 40 1 9.9001 -3.6143 -1.5942 41 1 9.0053 -3.7219 -4.2711 42 1 8.9735 -2.0244 -3.7365 43 1 10.9310 -1.9390 -6.8547 44 1 5.9687 -2.1388 -1.0662 45 1 6.1156 -2.0595 0.7058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067415621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:54 Heat of formation + Delta-G solvation = -115.527801 kcal Electronic energy + Delta-G solvation = -24041.879880 eV Core-core repulsion = 20478.239479 eV Total energy + Delta-G solvation = -3563.640401 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10737 -40.55939 -39.40129 -36.49045 -36.04793 -34.37031 -34.08868 -32.53533 -30.54448 -30.00576 -27.98148 -26.61048 -24.98106 -23.83388 -22.62589 -21.67517 -21.30472 -20.63489 -18.91525 -17.91479 -17.50294 -17.38330 -17.07536 -16.69787 -16.46902 -16.38316 -15.92397 -15.61158 -15.21886 -15.01569 -14.85493 -14.47824 -14.17146 -14.03096 -13.86178 -13.73430 -13.52895 -13.34082 -13.00196 -12.93040 -12.85361 -12.74909 -12.59182 -12.24513 -12.06229 -11.64176 -11.51940 -11.43218 -11.35174 -10.99283 -10.79471 -10.60403 -10.16227 -9.79766 -9.24557 -8.29804 -6.46766 1.41907 1.46248 1.54424 1.62135 1.81927 2.19666 2.30405 2.48958 3.04840 3.05706 3.69251 3.78864 3.85770 3.95949 4.04299 4.22319 4.25523 4.35847 4.36845 4.46504 4.49505 4.51239 4.63865 4.67276 4.69959 4.83379 4.91441 5.00812 5.06990 5.08618 5.12555 5.19127 5.23880 5.27688 5.38599 5.48923 5.51330 5.70318 5.84647 5.97849 6.19233 6.56219 6.64701 6.96708 7.23139 7.24931 7.55132 8.82253 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017344 B = 0.002850 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.961654 B = 9821.304544 C =11094.698251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.713 5.713 5 C 0.128 3.872 6 C -0.080 4.080 7 H 0.076 0.924 8 C -0.108 4.108 9 C -0.112 4.112 10 C 0.052 3.948 11 N -0.537 5.537 12 C 0.050 3.950 13 C 0.492 3.508 14 O -0.584 6.584 15 N -0.712 5.712 16 C 0.270 3.730 17 C -0.557 4.557 18 H 0.085 0.915 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.985 3.015 22 H -0.260 1.260 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.063 3.937 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.418 0.582 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.408 0.592 41 H -0.015 1.015 42 H -0.017 1.017 43 H 0.269 0.731 44 H 0.049 0.951 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 -5.711 20.692 27.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.288 3.712 3 O -0.491 6.491 4 N -0.366 5.366 5 C 0.003 3.997 6 C -0.100 4.100 7 H 0.094 0.906 8 C -0.146 4.146 9 C -0.149 4.149 10 C -0.075 4.075 11 N -0.262 5.262 12 C -0.081 4.081 13 C 0.279 3.721 14 O -0.464 6.464 15 N -0.363 5.363 16 C 0.147 3.853 17 C -0.594 4.594 18 H 0.103 0.897 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.065 4.065 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.256 0.744 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.243 0.757 41 H 0.003 0.997 42 H 0.001 0.999 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.987 -5.044 19.600 26.423 hybrid contribution 1.539 0.490 -0.243 1.633 sum -15.449 -4.554 19.357 25.181 Atomic orbital electron populations 1.21867 0.87648 1.06566 1.05917 1.21758 0.92573 0.82734 0.74159 1.90717 1.72361 1.33558 1.52458 1.46036 1.06736 1.09410 1.74386 1.21157 0.80775 0.96961 1.00805 1.21223 0.94392 0.93965 1.00377 0.90574 1.21645 1.01793 0.95977 0.95160 1.21578 0.93654 0.96675 1.03022 1.22287 0.97732 0.99470 0.88022 1.61452 1.12215 1.17158 1.35367 1.21947 0.90265 1.04592 0.91311 1.21433 0.82394 0.77235 0.91082 1.90627 1.45025 1.52387 1.58370 1.46210 1.07616 1.67492 1.14958 1.18469 0.95843 0.92211 0.78812 1.21605 0.91311 1.47533 0.98989 0.89743 1.26095 1.04354 0.94038 0.95247 1.70138 1.37499 1.45471 1.03956 0.85202 0.77383 0.79334 0.77268 1.18467 1.21150 1.18695 1.21979 0.95421 0.89000 1.00138 0.87309 0.87713 0.88396 0.74443 0.91923 0.94451 0.91624 0.89646 0.88739 0.91652 0.93786 0.89293 0.90041 0.85177 0.75685 0.99663 0.99924 0.92269 0.93261 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 10.39 71.24 0.74 -0.89 16 2 C 0.50 10.61 7.94 87.66 0.70 11.30 16 3 O -0.61 -20.17 17.10 -3.04 -0.05 -20.22 16 4 N -0.71 -12.59 5.31 -463.08 -2.46 -15.05 16 5 C 0.13 2.98 5.07 86.38 0.44 3.42 16 6 C -0.08 -1.70 2.39 -10.74 -0.03 -1.73 16 7 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 8 C -0.11 -1.48 5.13 30.68 0.16 -1.33 16 9 C -0.11 -1.48 6.09 30.65 0.19 -1.29 16 10 C 0.05 0.86 5.46 86.32 0.47 1.33 16 11 N -0.54 -13.77 4.35 -900.90 -3.92 -17.69 16 12 C 0.05 1.31 5.45 85.56 0.47 1.77 16 13 C 0.49 19.73 7.36 87.66 0.65 20.38 16 14 O -0.58 -29.26 14.70 -3.03 -0.04 -29.30 16 15 N -0.71 -30.30 5.55 -466.78 -2.59 -32.89 16 16 C 0.27 15.09 5.43 85.63 0.46 15.55 16 17 C -0.56 -30.66 9.28 25.60 0.24 -30.42 16 18 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 19 C 0.00 0.12 5.46 84.65 0.46 0.58 16 20 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 21 Si 0.99 42.76 29.54 68.60 2.03 44.78 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 C 0.06 1.73 4.40 86.33 0.38 2.11 16 26 H 0.11 0.37 7.91 -2.38 -0.02 0.35 16 27 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.42 4.33 7.52 -92.71 -0.70 3.63 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.80 7.27 -2.39 -0.02 0.78 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 38 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 39 H 0.13 2.68 7.98 -2.39 -0.02 2.67 16 40 H 0.41 14.11 8.32 -92.70 -0.77 13.34 16 41 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 42 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.05 1.82 6.05 -2.38 -0.01 1.80 16 45 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.52 365.78 -1.91 -85.43 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.48 Total: 21.11 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 5.32 Total: 20.79 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -8.68 Total: -122.58 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.10 Total: -49.53 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -83.52 -1.91 -85.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067415621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.094 kcal (2) G-P(sol) polarization free energy of solvation -83.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds