Wall clock time and date at job start Tue Mar 31 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 119.99460 * 2 1 4 4 N 1.34774 * 120.00180 * 179.97438 * 2 1 3 5 5 C 1.46495 * 119.99873 * 5.14598 * 4 2 1 6 6 C 1.46503 * 119.99815 * 185.13911 * 4 2 1 7 7 C 1.53116 * 109.52390 * 240.00597 * 6 4 2 8 8 C 1.53040 * 109.27953 * 182.44463 * 7 6 4 9 9 N 1.46844 * 109.52251 * 59.17758 * 8 7 6 10 10 C 1.46903 * 110.99879 * 174.16335 * 9 8 7 11 11 C 1.50697 * 109.47171 * 293.10037 * 10 9 8 12 12 O 1.21282 * 119.99949 * 353.60657 * 11 10 9 13 13 N 1.34779 * 120.00152 * 173.32835 * 11 10 9 14 14 C 1.46495 * 120.00033 * 180.27439 * 13 11 10 15 15 C 1.50695 * 109.47234 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00087 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00035 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00337 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00021 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47176 * 119.99620 * 19 17 15 22 22 H 1.48501 * 109.47017 * 240.00134 * 19 17 15 23 23 C 1.46849 * 111.19974 * 298.25769 * 9 8 7 24 24 C 1.53039 * 109.52106 * 61.74265 * 23 9 8 25 25 H 1.09004 * 109.47457 * 264.75770 * 1 2 3 26 26 H 1.08998 * 109.47487 * 24.75981 * 1 2 3 27 27 H 1.09006 * 109.46943 * 144.76113 * 1 2 3 28 28 H 1.08995 * 109.46946 * 274.64745 * 5 4 2 29 29 H 1.08999 * 109.47564 * 34.65016 * 5 4 2 30 30 H 1.09003 * 109.46782 * 154.64985 * 5 4 2 31 31 H 1.08996 * 109.52462 * 0.13121 * 6 4 2 32 32 H 1.09003 * 109.50867 * 62.49832 * 7 6 4 33 33 H 1.09000 * 109.50177 * 302.38318 * 7 6 4 34 34 H 1.09001 * 109.46140 * 299.16068 * 8 7 6 35 35 H 1.08999 * 109.45093 * 179.18859 * 8 7 6 36 36 H 1.09000 * 109.47120 * 173.09717 * 10 9 8 37 37 H 1.09005 * 109.47043 * 53.09754 * 10 9 8 38 38 H 0.96994 * 119.99625 * 0.27534 * 13 11 10 39 39 H 1.09000 * 109.47313 * 300.00642 * 14 13 11 40 40 H 1.09004 * 109.47055 * 60.00023 * 14 13 11 41 41 H 0.97000 * 120.00054 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46432 * 181.76201 * 23 9 8 43 43 H 1.09002 * 109.45916 * 301.73222 * 23 9 8 44 44 H 1.08999 * 109.49937 * 180.87984 * 24 23 9 45 45 H 1.08998 * 109.50143 * 60.76709 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4529 -2.4333 -0.1127 6 6 3.6415 -1.1696 0.1142 7 6 4.2499 -1.8357 -1.1230 8 6 5.7718 -1.8901 -0.9707 9 7 6.1172 -2.6510 0.2368 10 6 7.5700 -2.8421 0.3410 11 6 8.0396 -3.7409 -0.7737 12 8 7.2315 -4.2721 -1.5056 13 7 9.3579 -3.9499 -0.9608 14 6 9.8147 -4.8189 -2.0482 15 6 11.3202 -4.8842 -2.0403 16 1 11.8807 -4.3339 -1.2992 17 6 11.9820 -5.6475 -2.9787 18 7 11.2995 -6.3181 -3.8808 19 14 13.8482 -5.7291 -2.9685 20 1 14.3743 -4.8915 -1.8608 21 1 14.2811 -7.1360 -2.7731 22 1 14.3728 -5.2249 -4.2631 23 6 5.5837 -2.0045 1.4426 24 6 4.0563 -1.9535 1.3623 25 1 -0.3634 -0.0939 1.0234 26 1 -0.3634 0.9331 -0.4304 27 1 -0.3633 -0.8394 -0.5930 28 1 1.1208 -2.7511 0.8756 29 1 0.5870 -2.2980 -0.7608 30 1 2.1092 -3.1931 -0.5372 31 1 4.0026 -0.1440 0.1903 32 1 3.9935 -1.2577 -2.0108 33 1 3.8577 -2.8479 -1.2212 34 1 6.1647 -0.8769 -0.8863 35 1 6.2067 -2.3769 -1.8435 36 1 7.8084 -3.2992 1.3014 37 1 8.0699 -1.8764 0.2642 38 1 10.0042 -3.5250 -0.3755 39 1 9.4064 -5.8199 -1.9092 40 1 9.4738 -4.4167 -3.0022 41 1 11.7651 -6.8548 -4.5412 42 1 5.8824 -2.5742 2.3226 43 1 5.9775 -0.9907 1.5156 44 1 3.6615 -1.4597 2.2502 45 1 3.6610 -2.9676 1.3032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068576778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:46 Heat of formation + Delta-G solvation = -69.012123 kcal Electronic energy + Delta-G solvation = -24261.947517 eV Core-core repulsion = 20700.324187 eV Total energy + Delta-G solvation = -3561.623330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46573 -39.26725 -37.93084 -35.77591 -34.13072 -32.76378 -32.28372 -30.94214 -29.87841 -28.11325 -27.24487 -26.05641 -23.40243 -23.21089 -22.12669 -20.00171 -19.61792 -19.34642 -17.28176 -17.08602 -16.66967 -15.95630 -15.75434 -15.58287 -15.26907 -14.84385 -14.36737 -14.19284 -13.94136 -13.79515 -13.63479 -13.33930 -13.26134 -13.04174 -12.62723 -12.52276 -12.37041 -12.19742 -12.07044 -11.88973 -11.48304 -11.36802 -11.26062 -10.95318 -10.92285 -10.72328 -10.58767 -10.31620 -10.00861 -9.38012 -9.01718 -8.86839 -8.73508 -8.22735 -7.84857 -6.17197 -4.23913 2.36991 2.73832 3.22938 3.30018 3.32972 3.40403 3.64977 4.24717 4.30120 4.42231 4.64454 4.71306 4.73858 4.88976 4.94090 4.98917 5.10694 5.18391 5.19027 5.26071 5.27800 5.37074 5.41465 5.48747 5.49973 5.56574 5.56910 5.65395 5.77529 5.83210 5.98514 6.07872 6.23607 6.32371 6.95928 7.11687 7.14655 7.33011 7.46256 7.52363 7.68110 7.91777 7.97136 8.64838 8.79596 9.13974 9.43068 10.93027 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.040462 B = 0.002439 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.836260 B =11475.359924 C =11665.450622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.509 3.491 3 O -0.550 6.550 4 N -0.611 5.611 5 C 0.073 3.927 6 C 0.136 3.864 7 C -0.120 4.120 8 C 0.057 3.943 9 N -0.519 5.519 10 C 0.036 3.964 11 C 0.498 3.502 12 O -0.538 6.538 13 N -0.716 5.716 14 C 0.251 3.749 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.059 3.941 24 C -0.120 4.120 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.389 0.611 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 9.813 11.342 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.299 3.701 3 O -0.428 6.428 4 N -0.344 5.344 5 C -0.070 4.070 6 C 0.033 3.967 7 C -0.158 4.158 8 C -0.071 4.071 9 N -0.243 5.243 10 C -0.096 4.096 11 C 0.282 3.718 12 O -0.416 6.416 13 N -0.365 5.365 14 C 0.131 3.869 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.070 4.070 24 C -0.159 4.159 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.222 0.778 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.758 9.379 10.587 24.298 hybrid contribution 1.708 0.697 0.303 1.869 sum -18.050 10.076 10.890 23.365 Atomic orbital electron populations 1.21975 0.91888 1.04985 1.04557 1.20839 0.90651 0.83183 0.75476 1.90710 1.70764 1.31195 1.50109 1.47981 1.07144 1.06504 1.72760 1.21865 0.97322 0.86057 1.01737 1.21233 0.78762 1.01327 0.95414 1.21886 0.95255 1.01723 0.96956 1.22148 0.95230 0.95364 0.94392 1.61560 1.10913 1.49690 1.02174 1.22006 0.88689 0.99134 0.99734 1.20298 0.83260 0.82687 0.85587 1.90642 1.53618 1.50315 1.46980 1.46469 1.05665 1.49689 1.34711 1.19074 0.94165 0.89235 0.84465 1.21271 0.90878 1.30246 1.15681 0.91875 1.24960 0.99063 0.95011 0.95050 1.69982 1.35744 1.29634 1.16919 0.86366 0.84609 0.77932 0.78028 1.19649 1.20799 1.20806 1.22056 0.94437 0.97271 0.93219 1.21894 0.95479 1.01312 0.97220 0.88944 0.89155 0.89787 0.92435 0.91039 0.90015 0.88510 0.91343 0.90330 0.95273 0.88450 0.88228 0.92513 0.77847 0.95569 0.95656 0.92510 0.90218 0.94761 0.91399 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 9.69 36.00 0.35 -0.71 16 2 C 0.51 5.37 7.77 -10.99 -0.09 5.29 16 3 O -0.55 -8.25 16.44 5.56 0.09 -8.16 16 4 N -0.61 -5.74 2.77 -173.80 -0.48 -6.22 16 5 C 0.07 0.46 9.09 59.84 0.54 1.00 16 6 C 0.14 1.48 2.58 -67.81 -0.18 1.30 16 7 C -0.12 -1.44 5.41 -26.65 -0.14 -1.58 16 8 C 0.06 0.80 5.12 -3.83 -0.02 0.78 16 9 N -0.52 -7.11 4.34 -236.11 -1.02 -8.14 16 10 C 0.04 0.50 5.45 -4.98 -0.03 0.47 16 11 C 0.50 9.71 7.36 -10.99 -0.08 9.63 16 12 O -0.54 -12.62 14.76 5.56 0.08 -12.53 16 13 N -0.72 -14.84 5.55 -61.48 -0.34 -15.18 16 14 C 0.25 6.62 5.43 -5.20 -0.03 6.59 16 15 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 24 C -0.12 -1.17 5.41 -26.65 -0.14 -1.31 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.33 6.09 -51.93 -0.32 0.02 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.31 6.16 -51.93 -0.32 -0.01 16 30 H 0.08 0.57 6.40 -51.93 -0.33 0.24 16 31 H 0.10 1.25 6.92 -51.93 -0.36 0.89 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.97 6.59 -51.93 -0.34 0.63 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.67 6.11 -51.93 -0.32 1.35 16 36 H 0.10 1.19 7.97 -51.93 -0.41 0.78 16 37 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 42 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 43 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.75 7.59 -51.93 -0.39 0.36 16 LS Contribution 358.93 15.07 5.41 5.41 Total: -1.00 -34.59 358.93 -8.11 -42.70 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.31 Total: 2.93 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -0.25 Total: 8.72 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -1.11 Total: -54.85 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.59 -8.11 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068576778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.313 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds