Wall clock time and date at job start Tue Mar 31 2020 03:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47154 * 2 1 4 4 C 1.36938 * 119.99516 * 274.33086 * 3 2 1 5 5 H 1.07995 * 120.00891 * 337.80410 * 4 3 2 6 6 C 1.38818 * 119.99649 * 157.80701 * 4 3 2 7 7 N 1.31621 * 119.99716 * 7.72620 * 6 4 3 8 8 Si 1.86797 * 120.00034 * 187.72606 * 6 4 3 9 9 H 1.48498 * 109.46981 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46831 * 119.99915 * 8 6 4 11 11 H 1.48494 * 109.47182 * 239.99630 * 8 6 4 12 12 C 1.46491 * 120.00062 * 94.33035 * 3 2 1 13 13 C 1.50703 * 109.47409 * 270.00192 * 12 3 2 14 14 O 1.21233 * 119.99493 * 359.97438 * 13 12 3 15 15 N 1.34773 * 120.00187 * 179.97438 * 13 12 3 16 16 C 1.34781 * 120.00107 * 179.97438 * 15 13 12 17 17 O 1.21535 * 119.99809 * 0.02562 * 16 15 13 18 18 N 1.34773 * 120.00107 * 179.97438 * 16 15 13 19 19 C 1.46497 * 120.00206 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47123 * 275.00112 * 19 18 16 21 21 C 1.52996 * 109.47236 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47040 * 60.00102 * 21 20 19 23 23 C 1.53001 * 109.47258 * 299.99759 * 22 21 20 24 24 C 1.52998 * 109.47300 * 155.00125 * 19 18 16 25 25 H 1.09001 * 109.47230 * 59.99967 * 1 2 3 26 26 H 1.09005 * 109.46815 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47079 * 299.99946 * 1 2 3 28 28 H 1.09004 * 109.46633 * 239.99792 * 2 1 3 29 29 H 1.09001 * 109.47230 * 120.00033 * 2 1 3 30 30 H 0.97000 * 119.99928 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47271 * 150.00079 * 12 3 2 32 32 H 1.08998 * 109.47294 * 30.00003 * 12 3 2 33 33 H 0.97002 * 120.00348 * 359.97438 * 15 13 12 34 34 H 0.97005 * 119.99789 * 0.02562 * 18 16 15 35 35 H 1.09001 * 109.47017 * 34.99913 * 19 18 16 36 36 H 1.09001 * 109.47012 * 299.99805 * 20 19 18 37 37 H 1.09001 * 109.47108 * 59.99580 * 20 19 18 38 38 H 1.09001 * 109.47163 * 299.99960 * 21 20 19 39 39 H 1.09006 * 109.47184 * 179.97438 * 21 20 19 40 40 H 1.09006 * 109.47433 * 180.02562 * 22 21 20 41 41 H 1.08991 * 109.47259 * 59.99827 * 22 21 20 42 42 H 1.09001 * 109.47115 * 300.00245 * 23 22 21 43 43 H 1.08997 * 109.47641 * 179.97438 * 23 22 21 44 44 H 1.08994 * 109.47001 * 299.99523 * 24 19 18 45 45 H 1.09001 * 109.47258 * 59.99936 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1621 2.0565 -1.1826 5 1 2.2702 1.5093 -2.1074 6 6 2.1691 3.4446 -1.1927 7 7 2.1908 4.1109 -0.0578 8 14 2.1475 4.3669 -2.8170 9 1 2.1237 3.3938 -3.9384 10 1 0.9381 5.2262 -2.8822 11 1 3.3627 5.2139 -2.9215 12 6 2.3528 2.0398 1.2650 13 6 1.1318 2.7380 1.8062 14 8 0.0858 2.6904 1.1952 15 7 1.2027 3.4151 2.9693 16 6 0.1108 4.0399 3.4530 17 8 -0.9378 3.9922 2.8405 18 7 0.1816 4.7167 4.6163 19 6 -1.0054 5.3953 5.1424 20 6 -1.1207 6.7841 4.5108 21 6 -2.3607 7.4926 5.0597 22 6 -2.2382 7.6316 6.5784 23 6 -2.1229 6.2429 7.2101 24 6 -0.8823 5.5343 6.6611 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.1953 5.0808 -0.0649 31 1 3.1441 2.7703 1.0963 32 1 2.6936 1.2946 1.9837 33 1 2.0396 3.4529 3.4583 34 1 1.0185 4.7544 5.1053 35 1 -1.8940 4.8118 4.9018 36 1 -0.2320 7.3676 4.7514 37 1 -1.2084 6.6851 3.4288 38 1 -3.2492 6.9090 4.8187 39 1 -2.4426 8.4822 4.6101 40 1 -3.1218 8.1360 6.9696 41 1 -1.3498 8.2152 6.8194 42 1 -3.0114 5.6592 6.9691 43 1 -2.0352 6.3419 8.2920 44 1 -0.8002 4.5450 7.1110 45 1 0.0064 6.1178 6.9017 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068959165.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:09 Heat of formation + Delta-G solvation = -53.197705 kcal Electronic energy + Delta-G solvation = -25364.956199 eV Core-core repulsion = 21804.018634 eV Total energy + Delta-G solvation = -3560.937565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20035 -38.64309 -37.09413 -35.19793 -33.85213 -33.12280 -31.79468 -30.85372 -29.39175 -28.92699 -26.79962 -23.79693 -22.88790 -22.66766 -21.17377 -20.23347 -20.02903 -19.29219 -18.10351 -16.74388 -16.32110 -15.36569 -15.25578 -14.89194 -14.67887 -14.33249 -14.19628 -13.83280 -13.68985 -13.51651 -12.94086 -12.79101 -12.70123 -12.34245 -12.25182 -12.01429 -11.67417 -11.31786 -11.26111 -11.17522 -10.89910 -10.76790 -10.74040 -10.54272 -10.37694 -10.27164 -10.06374 -9.96593 -9.79972 -9.69433 -8.91015 -8.74118 -8.62956 -8.14062 -6.82854 -5.83073 -3.21049 3.12227 3.38617 3.43017 3.49260 3.51528 4.43867 4.52029 4.58326 4.62346 4.72847 4.88852 5.05133 5.17187 5.34296 5.40085 5.40270 5.43477 5.51537 5.52692 5.64796 5.88264 5.93908 5.99449 6.01174 6.12808 6.14257 6.16857 6.31280 6.38320 6.42899 6.51289 6.68105 6.72257 6.81054 7.04491 7.08978 7.27796 7.47975 7.65883 7.75690 8.27261 8.40026 9.15712 9.22976 9.65803 9.82914 10.26076 11.25124 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003988 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.461443 B = 7019.558868 C = 7803.592161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.144 3.856 3 N -0.578 5.578 4 C -0.240 4.240 5 H 0.077 0.923 6 C 0.006 3.994 7 N -0.913 5.913 8 Si 0.912 3.088 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.292 1.292 12 C 0.169 3.831 13 C 0.521 3.479 14 O -0.468 6.468 15 N -0.694 5.694 16 C 0.692 3.308 17 O -0.542 6.542 18 N -0.748 5.748 19 C 0.164 3.836 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.125 4.125 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.123 0.877 32 H 0.031 0.969 33 H 0.394 0.606 34 H 0.391 0.609 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 3.320 16.639 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 N -0.297 5.297 4 C -0.368 4.368 5 H 0.094 0.906 6 C -0.190 4.190 7 N -0.560 5.560 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.217 1.217 11 H -0.219 1.219 12 C 0.038 3.962 13 C 0.307 3.693 14 O -0.333 6.333 15 N -0.360 5.360 16 C 0.393 3.607 17 O -0.414 6.414 18 N -0.406 5.406 19 C 0.059 3.941 20 C -0.170 4.170 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.163 4.163 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.140 0.860 32 H 0.049 0.951 33 H 0.226 0.774 34 H 0.224 0.776 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.749 3.311 15.539 16.123 hybrid contribution 0.643 1.011 -0.287 1.232 sum -2.106 4.321 15.252 15.991 Atomic orbital electron populations 1.22341 0.98977 0.97984 1.03054 1.20894 0.92587 0.86336 0.98407 1.43852 1.73735 1.09909 1.02238 1.19313 1.42406 0.88906 0.86224 0.90571 1.24915 1.00378 0.96554 0.97164 1.69600 1.55779 1.06646 1.24014 0.86062 0.77094 0.79639 0.82948 1.20421 1.21677 1.21914 1.20775 0.94046 0.95149 0.86199 1.22688 0.92466 0.77619 0.76546 1.90610 1.31499 1.57341 1.53896 1.44806 1.12239 1.52943 1.26014 1.16462 0.85003 0.78503 0.80776 1.90995 1.28550 1.63482 1.58401 1.45449 1.13778 1.57042 1.24313 1.20736 0.88706 0.92759 0.91919 1.21953 0.97938 0.95688 1.01438 1.21499 0.98396 1.00487 0.95142 1.21571 1.01645 0.96863 0.95723 1.21486 0.97950 0.96280 0.99612 1.21812 0.98918 1.01020 0.94556 0.92959 0.95503 0.92487 0.93794 0.94472 0.93526 0.86001 0.95117 0.77364 0.77606 0.89689 0.92051 0.91106 0.91758 0.91923 0.92087 0.92008 0.91667 0.91738 0.91404 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.65 37.16 0.36 -3.25 16 2 C 0.14 3.09 6.44 -4.04 -0.03 3.06 16 3 N -0.58 -14.40 2.07 -174.61 -0.36 -14.76 16 4 C -0.24 -6.56 9.70 -15.06 -0.15 -6.70 16 5 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 6 C 0.01 0.17 5.41 -17.43 -0.09 0.08 16 7 N -0.91 -25.49 8.21 55.49 0.46 -25.04 16 8 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C 0.17 3.84 5.47 -5.20 -0.03 3.82 16 13 C 0.52 12.54 5.73 -10.99 -0.06 12.48 16 14 O -0.47 -13.65 12.29 -18.21 -0.22 -13.87 16 15 N -0.69 -13.35 5.24 -15.78 -0.08 -13.43 16 16 C 0.69 13.82 8.47 -86.92 -0.74 13.09 16 17 O -0.54 -13.87 14.41 -18.47 -0.27 -14.13 16 18 N -0.75 -10.52 5.08 -58.69 -0.30 -10.82 16 19 C 0.16 2.12 2.45 -67.93 -0.17 1.95 16 20 C -0.13 -1.71 5.49 -26.73 -0.15 -1.86 16 21 C -0.12 -1.25 5.92 -26.73 -0.16 -1.40 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -0.95 5.93 -26.70 -0.16 -1.11 16 24 C -0.12 -1.14 5.39 -26.70 -0.14 -1.28 16 25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.39 6.39 -51.93 -0.33 1.05 16 28 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 0.70 7.84 -51.93 -0.41 0.29 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.12 2.92 6.24 -51.93 -0.32 2.60 16 32 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 33 H 0.39 5.66 8.71 -40.82 -0.36 5.31 16 34 H 0.39 4.09 8.62 -40.82 -0.35 3.74 16 35 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -35.87 355.31 -9.73 -45.59 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.61 Total: 5.83 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: -1.67 Total: 17.69 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.29 Total: -64.06 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.49 Total: -28.01 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.87 -9.73 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068959165.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.603 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds