Wall clock time and date at job start Tue Mar 31 2020 03:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47295 * 2 1 4 4 C 1.46502 * 120.00093 * 90.00021 * 3 2 1 5 5 C 1.50705 * 109.46577 * 89.99936 * 4 3 2 6 6 H 1.07996 * 120.00511 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99193 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00616 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99662 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46779 * 90.00269 * 9 7 5 11 11 H 1.48498 * 109.47147 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47105 * 330.00303 * 9 7 5 13 13 C 1.34777 * 119.99814 * 269.72492 * 3 2 1 14 14 O 1.21276 * 120.00017 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00271 * 359.97438 * 13 3 2 16 16 N 1.46891 * 109.47462 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00226 * 294.30773 * 16 15 13 18 18 C 1.53242 * 109.34329 * 172.74611 * 17 16 15 19 19 N 1.47076 * 108.52198 * 53.82270 * 18 17 16 20 20 C 1.34781 * 120.87998 * 128.79095 * 19 18 17 21 21 C 1.50693 * 119.99874 * 355.27405 * 20 19 18 22 22 O 1.21278 * 120.00097 * 175.26512 * 20 19 18 23 23 C 1.47077 * 118.23847 * 308.82147 * 19 18 17 24 24 C 1.46895 * 111.00337 * 170.00069 * 16 15 13 25 25 H 1.09001 * 109.46457 * 300.00255 * 1 2 3 26 26 H 1.08999 * 109.47066 * 59.99640 * 1 2 3 27 27 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46894 * 239.99579 * 2 1 3 29 29 H 1.08999 * 109.47066 * 120.00360 * 2 1 3 30 30 H 1.09000 * 109.46996 * 209.99703 * 4 3 2 31 31 H 1.08998 * 109.46842 * 330.00432 * 4 3 2 32 32 H 0.97002 * 120.00242 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46892 * 300.00529 * 15 13 3 34 34 H 1.09002 * 109.46820 * 60.00083 * 15 13 3 35 35 H 1.09001 * 109.49030 * 292.70103 * 17 16 15 36 36 H 1.09002 * 109.49542 * 52.78059 * 17 16 15 37 37 H 1.09006 * 109.62412 * 294.11820 * 18 17 16 38 38 H 1.08998 * 109.62979 * 173.54154 * 18 17 16 39 39 H 1.09000 * 109.47314 * 5.40875 * 21 20 19 40 40 H 1.08996 * 109.47482 * 125.40931 * 21 20 19 41 41 H 1.09007 * 109.47055 * 245.40890 * 21 20 19 42 42 H 1.08994 * 109.63137 * 291.47087 * 23 19 18 43 43 H 1.09006 * 109.62921 * 170.89403 * 23 19 18 44 44 H 1.09006 * 109.49528 * 307.21618 * 24 16 15 45 45 H 1.09004 * 109.49047 * 67.29143 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6860 1.8349 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1495 2.3904 2.8774 8 7 3.3497 3.1265 3.6175 9 14 5.9136 2.0962 3.4170 10 1 6.7859 3.1608 2.8593 11 1 5.9884 2.1212 4.8999 12 1 6.3689 0.7727 2.9206 13 6 2.2483 2.0146 -1.1672 14 8 2.6522 3.1582 -1.1673 15 6 2.0036 1.3019 -2.4723 16 7 2.3262 2.2003 -3.5889 17 6 1.4042 3.3432 -3.6282 18 6 1.8811 4.3438 -4.6864 19 7 2.0438 3.6317 -5.9630 20 6 1.4746 4.0975 -7.0924 21 6 0.5717 5.3029 -7.0393 22 8 1.6891 3.5467 -8.1514 23 6 2.8437 2.3975 -5.9743 24 6 2.3288 1.4736 -4.8655 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0957 3.1410 1.1383 31 1 1.5818 1.6876 2.0284 32 1 3.6758 3.5169 4.4434 33 1 2.6343 0.4146 -2.5255 34 1 0.9560 1.0073 -2.5345 35 1 0.4033 2.9945 -3.8824 36 1 1.3840 3.8280 -2.6522 37 1 2.8361 4.7717 -4.3816 38 1 1.1414 5.1362 -4.8008 39 1 0.5754 5.7155 -6.0305 40 1 0.9295 6.0561 -7.7412 41 1 -0.4430 5.0089 -7.3079 42 1 3.8912 2.6383 -5.7933 43 1 2.7404 1.9031 -6.9403 44 1 2.9792 0.6024 -4.7868 45 1 1.3150 1.1508 -5.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076427449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:31 Heat of formation + Delta-G solvation = -48.473730 kcal Electronic energy + Delta-G solvation = -24987.287731 eV Core-core repulsion = 21426.555012 eV Total energy + Delta-G solvation = -3560.732718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36157 -39.26268 -37.63055 -35.34219 -34.55967 -32.80897 -31.78759 -30.14362 -30.01518 -28.87138 -27.00766 -24.98387 -23.80497 -23.05234 -22.38467 -21.32901 -19.04045 -18.38902 -17.36383 -16.68294 -16.33661 -15.97526 -15.69255 -15.66022 -15.32023 -14.63337 -14.62940 -14.40281 -13.92125 -13.69226 -13.47560 -13.35851 -13.29131 -12.70226 -12.52433 -12.19316 -12.09839 -12.01666 -11.83685 -11.63914 -11.40550 -11.32226 -11.20911 -11.03176 -10.91881 -10.73575 -10.54955 -10.13456 -9.92127 -9.63608 -9.10525 -8.72854 -8.44390 -8.23934 -7.66956 -6.05475 -4.09976 2.45981 2.83121 3.30885 3.35070 3.37298 3.42304 3.57086 4.10237 4.40174 4.44482 4.73084 4.80175 4.86333 4.96437 5.11905 5.14271 5.19135 5.21227 5.27812 5.29313 5.33510 5.40864 5.53766 5.57183 5.60859 5.64226 5.72932 5.75512 5.91598 5.97004 5.98100 6.18919 6.32081 6.42244 6.80355 7.01169 7.09316 7.27726 7.42192 7.53701 7.91247 7.99626 8.22426 8.40657 8.89664 9.09418 9.55401 11.02523 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.003432 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.726131 B = 8157.057666 C = 8637.629289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.525 6.525 15 C 0.038 3.962 16 N -0.519 5.519 17 C 0.037 3.963 18 C 0.108 3.892 19 N -0.613 5.613 20 C 0.512 3.488 21 C -0.181 4.181 22 O -0.556 6.556 23 C 0.117 3.883 24 C 0.043 3.957 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -2.588 -15.554 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.401 6.401 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.091 4.091 18 C -0.014 4.014 19 N -0.347 5.347 20 C 0.302 3.698 21 C -0.240 4.240 22 O -0.435 6.435 23 C -0.006 4.006 24 C -0.086 4.086 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.904 -1.970 -15.839 17.390 hybrid contribution 0.160 -0.620 0.475 0.798 sum -6.744 -2.590 -15.364 16.978 Atomic orbital electron populations 1.22217 0.96880 1.01385 1.02191 1.21405 0.93402 0.84353 1.02647 1.48277 1.63835 1.13287 1.07725 1.19244 0.96228 0.93551 0.78044 1.21438 0.96915 1.31846 1.06210 0.92478 1.24927 0.97812 0.94935 0.96396 1.69926 1.35620 1.33522 1.14394 0.86510 0.84816 0.78660 0.77495 1.20537 1.21200 1.19944 1.20095 0.78798 0.87169 0.84684 1.90626 1.44831 1.17880 1.86763 1.22074 1.00415 0.96136 0.90698 1.61515 1.52240 1.08839 1.01774 1.22667 0.92470 0.92470 1.01540 1.22060 1.03025 0.94600 0.81725 1.48324 1.51350 1.26179 1.08892 1.20800 0.80243 0.85710 0.83073 1.22029 1.00316 0.96792 1.04821 1.90691 1.62838 1.60637 1.29336 1.21679 0.95349 0.84572 0.98964 1.22505 1.00226 0.96644 0.89235 0.91986 0.93322 0.92188 0.91911 0.89897 0.93952 0.95115 0.92746 0.88345 0.92607 0.95204 0.86958 0.89760 0.88825 0.89682 0.88808 0.88820 0.90507 0.88848 0.89377 0.94594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.60 5.94 -4.04 -0.02 1.58 16 3 N -0.60 -11.98 2.46 -175.05 -0.43 -12.41 16 4 C 0.25 6.27 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.51 9.86 7.33 -10.98 -0.08 9.78 16 14 O -0.52 -12.29 13.91 5.56 0.08 -12.22 16 15 C 0.04 0.53 4.00 -4.98 -0.02 0.51 16 16 N -0.52 -7.14 4.37 -235.77 -1.03 -8.17 16 17 C 0.04 0.48 5.25 -3.70 -0.02 0.46 16 18 C 0.11 1.18 6.52 -3.60 -0.02 1.15 16 19 N -0.61 -7.09 3.01 -172.47 -0.52 -7.61 16 20 C 0.51 6.14 7.81 -10.99 -0.09 6.05 16 21 C -0.18 -1.40 10.12 36.00 0.36 -1.04 16 22 O -0.56 -8.73 16.58 5.56 0.09 -8.64 16 23 C 0.12 1.34 6.58 -3.61 -0.02 1.31 16 24 C 0.04 0.47 5.62 -3.70 -0.02 0.45 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.58 7.26 -51.93 -0.38 0.20 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 29 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.04 1.21 7.43 -51.93 -0.39 0.82 16 31 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 33 H 0.10 1.24 7.23 -51.93 -0.38 0.87 16 34 H 0.06 0.69 7.20 -51.93 -0.37 0.31 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.11 1.75 5.77 -51.93 -0.30 1.46 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.75 5.12 -51.93 -0.27 0.49 16 39 H 0.08 0.52 5.14 -51.93 -0.27 0.25 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 1.08 7.10 -51.93 -0.37 0.71 16 44 H 0.09 0.85 7.99 -51.93 -0.41 0.43 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -34.51 357.94 -7.93 -42.44 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.23 Total: -1.42 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.00 Total: 11.47 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -1.24 Total: -53.67 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.51 -7.93 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076427449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.038 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds