Wall clock time and date at job start Tue Mar 31 2020 03:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47295 * 2 1 4 4 C 1.46502 * 120.00093 * 90.00021 * 3 2 1 5 5 C 1.50705 * 109.46577 * 89.99936 * 4 3 2 6 6 H 1.07996 * 120.00511 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99193 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00616 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99662 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46779 * 90.00269 * 9 7 5 11 11 H 1.48498 * 109.47147 * 210.00009 * 9 7 5 12 12 H 1.48502 * 109.47105 * 330.00303 * 9 7 5 13 13 C 1.34777 * 119.99814 * 269.72492 * 3 2 1 14 14 O 1.21276 * 120.00017 * 179.97438 * 13 3 2 15 15 C 1.50702 * 120.00271 * 359.97438 * 13 3 2 16 16 N 1.46891 * 109.47462 * 179.97438 * 15 13 3 17 17 C 1.46894 * 111.00226 * 294.30773 * 16 15 13 18 18 C 1.53242 * 109.34329 * 172.74611 * 17 16 15 19 19 N 1.47076 * 108.52198 * 53.82270 * 18 17 16 20 20 C 1.34781 * 120.87998 * 128.79095 * 19 18 17 21 21 C 1.50693 * 119.99874 * 355.27405 * 20 19 18 22 22 O 1.21278 * 120.00097 * 175.26512 * 20 19 18 23 23 C 1.47077 * 118.23847 * 308.82147 * 19 18 17 24 24 C 1.46895 * 111.00337 * 170.00069 * 16 15 13 25 25 H 1.09001 * 109.46457 * 300.00255 * 1 2 3 26 26 H 1.08999 * 109.47066 * 59.99640 * 1 2 3 27 27 H 1.08996 * 109.47420 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46894 * 239.99579 * 2 1 3 29 29 H 1.08999 * 109.47066 * 120.00360 * 2 1 3 30 30 H 1.09000 * 109.46996 * 209.99703 * 4 3 2 31 31 H 1.08998 * 109.46842 * 330.00432 * 4 3 2 32 32 H 0.97002 * 120.00242 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46892 * 300.00529 * 15 13 3 34 34 H 1.09002 * 109.46820 * 60.00083 * 15 13 3 35 35 H 1.09001 * 109.49030 * 292.70103 * 17 16 15 36 36 H 1.09002 * 109.49542 * 52.78059 * 17 16 15 37 37 H 1.09006 * 109.62412 * 294.11820 * 18 17 16 38 38 H 1.08998 * 109.62979 * 173.54154 * 18 17 16 39 39 H 1.09000 * 109.47314 * 5.40875 * 21 20 19 40 40 H 1.08996 * 109.47482 * 125.40931 * 21 20 19 41 41 H 1.09007 * 109.47055 * 245.40890 * 21 20 19 42 42 H 1.08994 * 109.63137 * 291.47087 * 23 19 18 43 43 H 1.09006 * 109.62921 * 170.89403 * 23 19 18 44 44 H 1.09006 * 109.49528 * 307.21618 * 24 16 15 45 45 H 1.09004 * 109.49047 * 67.29143 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6860 1.8349 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1495 2.3904 2.8774 8 7 3.3497 3.1265 3.6175 9 14 5.9136 2.0962 3.4170 10 1 6.7859 3.1608 2.8593 11 1 5.9884 2.1212 4.8999 12 1 6.3689 0.7727 2.9206 13 6 2.2483 2.0146 -1.1672 14 8 2.6522 3.1582 -1.1673 15 6 2.0036 1.3019 -2.4723 16 7 2.3262 2.2003 -3.5889 17 6 1.4042 3.3432 -3.6282 18 6 1.8811 4.3438 -4.6864 19 7 2.0438 3.6317 -5.9630 20 6 1.4746 4.0975 -7.0924 21 6 0.5717 5.3029 -7.0393 22 8 1.6891 3.5467 -8.1514 23 6 2.8437 2.3975 -5.9743 24 6 2.3288 1.4736 -4.8655 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0957 3.1410 1.1383 31 1 1.5818 1.6876 2.0284 32 1 3.6758 3.5169 4.4434 33 1 2.6343 0.4146 -2.5255 34 1 0.9560 1.0073 -2.5345 35 1 0.4033 2.9945 -3.8824 36 1 1.3840 3.8280 -2.6522 37 1 2.8361 4.7717 -4.3816 38 1 1.1414 5.1362 -4.8008 39 1 0.5754 5.7155 -6.0305 40 1 0.9295 6.0561 -7.7412 41 1 -0.4430 5.0089 -7.3079 42 1 3.8912 2.6383 -5.7933 43 1 2.7404 1.9031 -6.9403 44 1 2.9792 0.6024 -4.7868 45 1 1.3150 1.1508 -5.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076427449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:30 Heat of formation + Delta-G solvation = -73.264985 kcal Electronic energy + Delta-G solvation = -24988.362760 eV Core-core repulsion = 21426.555012 eV Total energy + Delta-G solvation = -3561.807748 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38217 -40.61754 -38.74856 -36.87315 -35.64313 -34.85057 -32.67374 -31.61537 -30.95370 -29.98072 -28.60462 -26.30432 -24.74038 -24.60782 -23.84079 -22.30235 -19.99624 -19.82870 -18.59510 -18.30361 -17.88574 -17.20812 -16.90926 -16.62077 -16.45496 -16.29810 -15.75712 -15.63772 -15.23698 -14.69233 -14.61510 -14.51432 -14.41295 -14.13650 -13.62643 -13.51657 -13.26513 -13.11134 -13.01270 -12.90890 -12.87970 -12.64075 -12.51887 -12.27415 -12.21179 -12.16427 -12.07540 -11.81466 -11.66187 -10.86852 -10.62751 -10.50216 -9.83820 -9.39511 -9.22289 -8.20166 -6.34440 1.37685 1.40604 1.49867 1.55630 1.89572 1.96334 2.25770 2.42377 2.94498 3.09456 3.59440 3.69359 3.87390 3.98756 4.07736 4.12318 4.17318 4.23122 4.38911 4.39246 4.47085 4.52126 4.58247 4.61797 4.66572 4.73119 4.79387 4.86762 4.95691 5.01149 5.01700 5.08560 5.14698 5.25334 5.39354 5.40347 5.61367 5.82233 5.92742 6.06357 6.10119 6.38765 6.74126 6.87657 7.08977 7.32032 7.57712 8.86438 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.003432 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.726131 B = 8157.057666 C = 8637.629289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.497 3.503 14 O -0.575 6.575 15 C 0.054 3.946 16 N -0.542 5.542 17 C 0.040 3.960 18 C 0.114 3.886 19 N -0.613 5.613 20 C 0.507 3.493 21 C -0.174 4.174 22 O -0.599 6.599 23 C 0.114 3.886 24 C 0.051 3.949 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.070 0.930 30 H -0.003 1.003 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.121 0.879 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -4.091 -16.806 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.186 1.186 13 C 0.286 3.714 14 O -0.455 6.455 15 C -0.077 4.077 16 N -0.267 5.267 17 C -0.088 4.088 18 C -0.008 4.008 19 N -0.346 5.346 20 C 0.298 3.702 21 C -0.233 4.233 22 O -0.481 6.481 23 C -0.009 4.009 24 C -0.077 4.077 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.016 0.984 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.124 0.876 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.275 -3.514 -17.095 18.908 hybrid contribution 0.249 -0.137 0.859 0.905 sum -7.026 -3.651 -16.236 18.064 Atomic orbital electron populations 1.22139 0.94715 1.03369 1.01541 1.21723 0.95157 0.81543 1.03844 1.48289 1.64129 1.15118 1.06238 1.18640 0.94985 0.91526 0.80431 1.21728 0.97991 1.31762 1.06378 0.92953 1.25819 1.02152 0.94588 0.96513 1.70042 1.37620 1.34335 1.14849 0.85466 0.79368 0.78811 0.77465 1.20752 1.20107 1.18645 1.21117 0.77392 0.86804 0.86127 1.90603 1.46930 1.20276 1.87647 1.21960 1.02473 0.95777 0.87481 1.61459 1.53042 1.09443 1.02755 1.22556 0.93256 0.92603 1.00431 1.22050 1.03147 0.94725 0.80897 1.48418 1.50993 1.26178 1.09056 1.21538 0.80084 0.86294 0.82278 1.22062 0.99914 0.95049 1.06231 1.90670 1.64449 1.62204 1.30747 1.21688 0.95174 0.84910 0.99115 1.22496 1.01157 0.96629 0.87401 0.94350 0.92284 0.88793 0.88204 0.91177 0.98444 0.96293 0.92490 0.86081 0.89847 0.93744 0.90117 0.91309 0.85819 0.87953 0.87836 0.87434 0.91170 0.89034 0.87579 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.83 5.94 86.38 0.51 3.35 16 3 N -0.61 -24.38 2.46 -826.13 -2.03 -26.41 16 4 C 0.27 14.01 5.16 85.63 0.44 14.45 16 5 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.47 5.46 84.66 0.46 0.93 16 8 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 13 C 0.50 19.34 7.33 87.66 0.64 19.98 16 14 O -0.57 -27.95 13.91 -3.02 -0.04 -27.99 16 15 C 0.05 1.38 4.00 85.56 0.34 1.72 16 16 N -0.54 -13.96 4.37 -899.84 -3.93 -17.89 16 17 C 0.04 0.99 5.25 86.39 0.45 1.44 16 18 C 0.11 2.34 6.52 86.35 0.56 2.90 16 19 N -0.61 -13.30 3.01 -817.95 -2.46 -15.77 16 20 C 0.51 11.38 7.81 87.65 0.68 12.07 16 21 C -0.17 -2.27 10.12 71.23 0.72 -1.55 16 22 O -0.60 -18.37 16.58 -3.02 -0.05 -18.42 16 23 C 0.11 2.46 6.58 86.35 0.57 3.02 16 24 C 0.05 0.99 5.62 86.38 0.49 1.48 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.23 7.26 -2.39 -0.02 1.21 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 2.10 6.43 -2.38 -0.02 2.09 16 29 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 30 H 0.00 -0.16 7.43 -2.39 -0.02 -0.17 16 31 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.12 2.59 7.23 -2.39 -0.02 2.57 16 34 H 0.08 1.72 7.20 -2.39 -0.02 1.71 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 2.57 5.77 -2.39 -0.01 2.55 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.12 1.72 5.12 -2.39 -0.01 1.71 16 39 H 0.10 0.94 5.14 -2.39 -0.01 0.93 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.09 2.03 7.10 -2.38 -0.02 2.01 16 44 H 0.11 1.68 7.99 -2.38 -0.02 1.66 16 45 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -78.87 357.94 1.62 -77.25 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.97 Total: 11.62 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 6.85 Total: 26.36 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.14 Total: -115.57 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -0.09 Total: -46.41 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -78.87 1.62 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076427449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.980 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds