Wall clock time and date at job start Tue Mar 31 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46776 * 2 1 4 4 C 1.34780 * 119.99986 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99761 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00063 * 180.02562 * 4 3 2 7 7 C 1.34780 * 120.00063 * 179.97438 * 6 4 3 8 8 O 1.21230 * 119.99850 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00235 * 180.27440 * 7 6 4 10 10 H 1.09003 * 109.46927 * 299.72620 * 9 7 6 11 11 C 1.53000 * 109.46988 * 59.72237 * 9 7 6 12 12 N 1.46503 * 109.47499 * 179.72778 * 9 7 6 13 13 C 1.36936 * 119.99462 * 305.44877 * 12 9 7 14 14 H 1.08000 * 119.99832 * 125.35745 * 13 12 9 15 15 C 1.38814 * 120.00041 * 305.35325 * 13 12 9 16 16 N 1.31619 * 120.00118 * 322.93299 * 15 13 12 17 17 Si 1.86800 * 119.99884 * 142.93526 * 15 13 12 18 18 H 1.48497 * 109.47356 * 89.99783 * 17 15 13 19 19 H 1.48493 * 109.46984 * 209.99894 * 17 15 13 20 20 H 1.48501 * 109.46893 * 329.99742 * 17 15 13 21 21 C 1.46500 * 120.00013 * 125.44865 * 12 9 7 22 22 C 1.54275 * 110.02895 * 237.16571 * 21 12 9 23 23 C 1.54888 * 104.19216 * 217.10596 * 22 21 12 24 24 C 1.54892 * 102.75059 * 37.94802 * 23 22 21 25 25 C 1.53876 * 110.02977 * 120.00221 * 21 12 9 26 26 H 1.09002 * 109.47598 * 59.99830 * 1 2 3 27 27 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47058 * 299.99171 * 1 2 3 29 29 H 1.09005 * 109.46995 * 240.00389 * 2 1 3 30 30 H 1.08994 * 109.47789 * 120.00379 * 2 1 3 31 31 H 0.96996 * 120.00121 * 0.02562 * 3 2 1 32 32 H 0.96997 * 120.00123 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.47271 * 291.06771 * 11 9 7 34 34 H 1.09001 * 109.47014 * 51.07087 * 11 9 7 35 35 H 1.09003 * 109.47150 * 171.06784 * 11 9 7 36 36 H 0.96996 * 119.99760 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.02121 * 358.60653 * 21 12 9 38 38 H 1.09004 * 110.48616 * 335.78426 * 22 21 12 39 39 H 1.08995 * 110.48333 * 98.43300 * 22 21 12 40 40 H 1.08993 * 110.76042 * 279.62766 * 23 22 21 41 41 H 1.09008 * 110.91046 * 156.32852 * 23 22 21 42 42 H 1.08998 * 110.48701 * 203.37801 * 24 23 22 43 43 H 1.09003 * 110.60278 * 80.78674 * 24 23 22 44 44 H 1.08991 * 110.03248 * 238.56481 * 25 21 12 45 45 H 1.09003 * 110.03419 * 359.95199 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1331 0.7038 -0.0015 6 7 3.7925 2.8982 0.0000 7 6 5.1176 3.1446 0.0000 8 8 5.9054 2.2232 -0.0009 9 6 5.6199 4.5654 0.0068 10 1 5.2597 5.0824 -0.8826 11 6 5.1053 5.2822 1.2568 12 7 7.0849 4.5655 0.0120 13 6 7.7661 3.8743 0.9781 14 1 8.5058 3.1396 0.6962 15 6 7.5059 4.1179 2.3197 16 7 7.2469 5.3420 2.7281 17 14 7.5234 2.7084 3.5454 18 1 8.8931 2.5482 4.0962 19 1 6.5765 3.0021 4.6509 20 1 7.1144 1.4542 2.8634 21 6 7.8210 5.3050 -1.0163 22 6 8.7685 4.3532 -1.7754 23 6 10.0311 5.2090 -2.0443 24 6 10.1638 6.0404 -0.7441 25 6 8.7081 6.3778 -0.3606 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.3879 2.1185 0.0004 32 1 3.1621 3.6355 0.0004 33 1 4.0274 5.4227 1.1772 34 1 5.3294 4.6814 2.1382 35 1 5.5928 6.2531 1.3454 36 1 7.0655 5.5122 3.6656 37 1 7.1234 5.7715 -1.7118 38 1 9.0171 3.4899 -1.1580 39 1 8.3167 4.0343 -2.7146 40 1 9.8804 5.8600 -2.9054 41 1 10.9067 4.5760 -2.1890 42 1 10.7303 6.9527 -0.9309 43 1 10.6385 5.4516 0.0408 44 1 8.4417 7.3647 -0.7386 45 1 8.5904 6.3487 0.7226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080215613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:34 Heat of formation + Delta-G solvation = -35.225441 kcal Electronic energy + Delta-G solvation = -25864.597514 eV Core-core repulsion = 22304.439285 eV Total energy + Delta-G solvation = -3560.158229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48694 -38.27626 -37.18778 -35.11107 -34.34619 -33.86165 -31.39078 -30.44224 -29.51404 -27.64918 -26.37663 -24.35642 -23.69595 -22.47398 -20.90071 -19.85747 -19.58350 -18.95639 -18.49975 -16.52570 -16.00785 -15.74169 -15.38549 -14.93481 -14.68019 -14.46278 -14.24954 -14.15940 -13.53491 -13.36705 -12.81909 -12.62840 -12.55356 -12.31150 -11.96612 -11.77878 -11.61749 -11.40804 -11.06509 -10.91678 -10.84905 -10.48588 -10.27037 -10.25387 -10.16162 -10.10239 -10.05340 -10.01753 -9.56567 -9.39522 -9.35526 -8.95640 -8.60423 -7.89062 -6.47516 -5.77599 -3.37808 2.80933 2.93824 3.40122 3.50841 3.73884 3.98068 4.30068 4.57804 4.84362 4.94936 5.14894 5.17360 5.29613 5.54364 5.59049 5.64277 5.66341 5.78865 5.81428 5.84838 6.00624 6.25936 6.34640 6.38991 6.43536 6.49379 6.53930 6.61376 6.64798 6.68614 6.77051 6.79333 7.00685 7.04735 7.18824 7.22445 7.34077 7.65508 7.72242 7.93760 7.99208 8.76058 8.82254 9.00203 9.21745 9.75964 10.47163 11.05797 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.005068 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.385168 B = 5523.884737 C = 6253.793041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 N -0.749 5.749 4 C 0.688 3.312 5 O -0.537 6.537 6 N -0.699 5.699 7 C 0.489 3.511 8 O -0.431 6.431 9 C 0.171 3.829 10 H 0.068 0.932 11 C -0.140 4.140 12 N -0.556 5.556 13 C -0.254 4.254 14 H 0.052 0.948 15 C 0.050 3.950 16 N -0.849 5.849 17 Si 0.852 3.148 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.267 1.267 21 C 0.177 3.823 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.133 4.133 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.394 0.606 32 H 0.399 0.601 33 H 0.012 0.988 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 0.780 -6.525 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.006 3.994 3 N -0.408 5.408 4 C 0.388 3.612 5 O -0.409 6.409 6 N -0.367 5.367 7 C 0.273 3.727 8 O -0.293 6.293 9 C 0.059 3.941 10 H 0.086 0.914 11 C -0.199 4.199 12 N -0.276 5.276 13 C -0.383 4.383 14 H 0.069 0.931 15 C -0.154 4.154 16 N -0.486 5.486 17 Si 0.679 3.321 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.192 1.192 21 C 0.071 3.929 22 C -0.173 4.173 23 C -0.160 4.160 24 C -0.153 4.153 25 C -0.172 4.172 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.233 0.767 33 H 0.031 0.969 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.429 -0.572 -6.370 12.234 hybrid contribution -0.959 -0.045 0.869 1.295 sum -11.388 -0.617 -5.500 12.662 Atomic orbital electron populations 1.21999 0.94570 1.03071 1.02414 1.21138 0.93628 0.82168 1.02444 1.45391 1.05464 1.08977 1.80959 1.16451 0.82558 0.84003 0.78177 1.91042 1.54290 1.42834 1.52737 1.44951 1.10922 1.07244 1.73591 1.22954 0.79367 0.94809 0.75565 1.90757 1.53381 1.45914 1.39263 1.20584 0.87506 0.88150 0.97855 0.91403 1.22419 0.95200 1.03230 0.99075 1.43572 0.97514 1.56520 1.29960 1.18276 1.21619 1.14521 0.83861 0.93069 1.25148 0.98029 0.94434 0.97785 1.70425 1.45477 1.17662 1.15049 0.87153 0.77664 0.86255 0.80993 1.21091 1.21775 1.19184 1.21103 0.92138 0.90454 0.89216 1.22779 0.95507 1.00028 0.98996 1.22421 0.98019 0.98196 0.97376 1.22227 0.98007 0.98151 0.96900 1.22614 0.93381 0.96332 1.04887 0.92038 0.90847 0.92006 0.91668 0.91670 0.77227 0.76689 0.96871 0.90881 0.90023 0.93713 0.93982 0.90236 0.93903 0.92986 0.93084 0.93800 0.91898 0.94660 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 10.03 37.16 0.37 -0.75 16 2 C 0.13 1.44 6.39 -4.04 -0.03 1.41 16 3 N -0.75 -9.23 5.56 -65.24 -0.36 -9.59 16 4 C 0.69 12.49 8.50 -86.92 -0.74 11.75 16 5 O -0.54 -12.88 14.74 -18.47 -0.27 -13.15 16 6 N -0.70 -11.89 5.14 -15.78 -0.08 -11.98 16 7 C 0.49 10.72 6.95 -10.99 -0.08 10.64 16 8 O -0.43 -11.76 13.38 -18.20 -0.24 -12.00 16 9 C 0.17 3.53 3.17 -69.08 -0.22 3.31 16 10 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 11 C -0.14 -2.82 7.49 37.16 0.28 -2.54 16 12 N -0.56 -12.98 2.15 -158.19 -0.34 -13.32 16 13 C -0.25 -6.77 5.60 -15.06 -0.08 -6.85 16 14 H 0.05 1.51 6.88 -52.49 -0.36 1.15 16 15 C 0.05 1.34 3.54 -17.43 -0.06 1.27 16 16 N -0.85 -22.15 9.97 55.49 0.55 -21.60 16 17 Si 0.85 22.21 29.68 -169.99 -5.05 17.16 16 18 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 20 H -0.27 -7.61 7.11 56.52 0.40 -7.21 16 21 C 0.18 3.66 3.44 -66.81 -0.23 3.43 16 22 C -0.13 -2.66 6.41 -25.07 -0.16 -2.82 16 23 C -0.12 -2.09 6.91 -24.74 -0.17 -2.26 16 24 C -0.11 -2.10 6.83 -25.07 -0.17 -2.28 16 25 C -0.13 -2.70 6.28 -25.61 -0.16 -2.86 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.39 3.35 8.49 -40.82 -0.35 3.00 16 32 H 0.40 4.82 8.31 -40.82 -0.34 4.48 16 33 H 0.01 0.20 7.82 -51.93 -0.41 -0.21 16 34 H 0.07 1.73 5.47 -51.93 -0.28 1.44 16 35 H 0.08 1.78 7.41 -51.93 -0.38 1.40 16 36 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.04 0.80 7.59 -51.93 -0.39 0.40 16 38 H 0.08 1.83 6.35 -51.93 -0.33 1.50 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.11 2.55 6.79 -51.93 -0.35 2.20 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -34.18 354.04 -9.28 -43.46 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.38 Total: 4.21 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -1.45 Total: 11.46 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.23 Total: -56.48 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.52 Total: -25.15 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.05 Total: 17.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.18 -9.28 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.235 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds