Wall clock time and date at job start Tue Mar 31 2020 03:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46776 * 2 1 4 4 C 1.34780 * 119.99986 * 180.02562 * 3 2 1 5 5 O 1.21539 * 119.99761 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00063 * 180.02562 * 4 3 2 7 7 C 1.34780 * 120.00063 * 179.97438 * 6 4 3 8 8 O 1.21230 * 119.99850 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00235 * 180.27440 * 7 6 4 10 10 H 1.09003 * 109.46927 * 299.72620 * 9 7 6 11 11 C 1.53000 * 109.46988 * 59.72237 * 9 7 6 12 12 N 1.46503 * 109.47499 * 179.72778 * 9 7 6 13 13 C 1.36936 * 119.99462 * 305.44877 * 12 9 7 14 14 H 1.08000 * 119.99832 * 125.35745 * 13 12 9 15 15 C 1.38814 * 120.00041 * 305.35325 * 13 12 9 16 16 N 1.31619 * 120.00118 * 322.93299 * 15 13 12 17 17 Si 1.86800 * 119.99884 * 142.93526 * 15 13 12 18 18 H 1.48497 * 109.47356 * 89.99783 * 17 15 13 19 19 H 1.48493 * 109.46984 * 209.99894 * 17 15 13 20 20 H 1.48501 * 109.46893 * 329.99742 * 17 15 13 21 21 C 1.46500 * 120.00013 * 125.44865 * 12 9 7 22 22 C 1.54275 * 110.02895 * 237.16571 * 21 12 9 23 23 C 1.54888 * 104.19216 * 217.10596 * 22 21 12 24 24 C 1.54892 * 102.75059 * 37.94802 * 23 22 21 25 25 C 1.53876 * 110.02977 * 120.00221 * 21 12 9 26 26 H 1.09002 * 109.47598 * 59.99830 * 1 2 3 27 27 H 1.09006 * 109.46903 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47058 * 299.99171 * 1 2 3 29 29 H 1.09005 * 109.46995 * 240.00389 * 2 1 3 30 30 H 1.08994 * 109.47789 * 120.00379 * 2 1 3 31 31 H 0.96996 * 120.00121 * 0.02562 * 3 2 1 32 32 H 0.96997 * 120.00123 * 359.97438 * 6 4 3 33 33 H 1.08999 * 109.47271 * 291.06771 * 11 9 7 34 34 H 1.09001 * 109.47014 * 51.07087 * 11 9 7 35 35 H 1.09003 * 109.47150 * 171.06784 * 11 9 7 36 36 H 0.96996 * 119.99760 * 180.02562 * 16 15 13 37 37 H 1.08992 * 110.02121 * 358.60653 * 21 12 9 38 38 H 1.09004 * 110.48616 * 335.78426 * 22 21 12 39 39 H 1.08995 * 110.48333 * 98.43300 * 22 21 12 40 40 H 1.08993 * 110.76042 * 279.62766 * 23 22 21 41 41 H 1.09008 * 110.91046 * 156.32852 * 23 22 21 42 42 H 1.08998 * 110.48701 * 203.37801 * 24 23 22 43 43 H 1.09003 * 110.60278 * 80.78674 * 24 23 22 44 44 H 1.08991 * 110.03248 * 238.56481 * 25 21 12 45 45 H 1.09003 * 110.03419 * 359.95199 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1331 0.7038 -0.0015 6 7 3.7925 2.8982 0.0000 7 6 5.1176 3.1446 0.0000 8 8 5.9054 2.2232 -0.0009 9 6 5.6199 4.5654 0.0068 10 1 5.2597 5.0824 -0.8826 11 6 5.1053 5.2822 1.2568 12 7 7.0849 4.5655 0.0120 13 6 7.7661 3.8743 0.9781 14 1 8.5058 3.1396 0.6962 15 6 7.5059 4.1179 2.3197 16 7 7.2469 5.3420 2.7281 17 14 7.5234 2.7084 3.5454 18 1 8.8931 2.5482 4.0962 19 1 6.5765 3.0021 4.6509 20 1 7.1144 1.4542 2.8634 21 6 7.8210 5.3050 -1.0163 22 6 8.7685 4.3532 -1.7754 23 6 10.0311 5.2090 -2.0443 24 6 10.1638 6.0404 -0.7441 25 6 8.7081 6.3778 -0.3606 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.3879 2.1185 0.0004 32 1 3.1621 3.6355 0.0004 33 1 4.0274 5.4227 1.1772 34 1 5.3294 4.6814 2.1382 35 1 5.5928 6.2531 1.3454 36 1 7.0655 5.5122 3.6656 37 1 7.1234 5.7715 -1.7118 38 1 9.0171 3.4899 -1.1580 39 1 8.3167 4.0343 -2.7146 40 1 9.8804 5.8600 -2.9054 41 1 10.9067 4.5760 -2.1890 42 1 10.7303 6.9527 -0.9309 43 1 10.6385 5.4516 0.0408 44 1 8.4417 7.3647 -0.7386 45 1 8.5904 6.3487 0.7226 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080215613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:33 Heat of formation + Delta-G solvation = -58.997302 kcal Electronic energy + Delta-G solvation = -25865.628340 eV Core-core repulsion = 22304.439285 eV Total energy + Delta-G solvation = -3561.189055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03475 -39.89113 -38.77230 -36.41682 -36.04409 -35.49586 -33.33829 -31.66574 -30.89775 -29.19983 -28.11960 -25.92242 -25.32177 -23.64900 -22.34629 -21.40265 -21.18249 -20.64956 -19.90510 -18.19718 -17.76951 -17.11412 -16.82536 -16.53041 -16.41722 -16.03456 -15.69423 -15.61055 -15.13382 -14.89094 -14.51696 -14.39446 -13.91397 -13.39605 -13.32650 -13.27710 -12.97982 -12.83418 -12.69602 -12.67998 -12.40810 -12.33825 -12.11496 -11.97682 -11.81035 -11.72098 -11.66138 -11.59616 -11.17385 -11.03809 -11.01512 -10.37449 -10.13013 -9.89954 -8.44159 -7.73779 -5.41356 1.24579 1.29794 1.35047 1.49758 1.55716 2.42063 2.48893 3.02972 3.16727 3.58669 4.04431 4.08455 4.10890 4.14760 4.21560 4.36677 4.43180 4.51545 4.72434 4.77020 4.87512 4.88127 4.99795 5.03705 5.06211 5.06545 5.11479 5.21163 5.29696 5.31360 5.34552 5.38000 5.40806 5.46720 5.67809 5.72472 5.76404 5.86222 6.01103 6.04185 6.69758 6.74685 7.24509 7.44774 7.46605 7.84079 8.48720 8.97931 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.005068 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.385168 B = 5523.884737 C = 6253.793041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 N -0.719 5.719 4 C 0.682 3.318 5 O -0.600 6.600 6 N -0.680 5.680 7 C 0.492 3.508 8 O -0.496 6.496 9 C 0.165 3.835 10 H 0.112 0.888 11 C -0.127 4.127 12 N -0.569 5.569 13 C -0.242 4.242 14 H 0.008 0.992 15 C 0.036 3.964 16 N -0.845 5.845 17 Si 0.874 3.126 18 H -0.283 1.283 19 H -0.280 1.280 20 H -0.310 1.310 21 C 0.168 3.832 22 C -0.134 4.134 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.128 4.128 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.418 0.582 32 H 0.426 0.574 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.059 0.941 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.293 3.141 -8.142 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.000 4.000 3 N -0.379 5.379 4 C 0.383 3.617 5 O -0.477 6.477 6 N -0.350 5.350 7 C 0.277 3.723 8 O -0.363 6.363 9 C 0.054 3.946 10 H 0.130 0.870 11 C -0.186 4.186 12 N -0.288 5.288 13 C -0.373 4.373 14 H 0.026 0.974 15 C -0.167 4.167 16 N -0.483 5.483 17 Si 0.703 3.297 18 H -0.210 1.210 19 H -0.206 1.206 20 H -0.238 1.238 21 C 0.063 3.937 22 C -0.173 4.173 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.256 0.744 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.094 1.871 -7.975 15.445 hybrid contribution -0.276 -0.858 1.301 1.583 sum -13.370 1.013 -6.673 14.977 Atomic orbital electron populations 1.21938 0.90592 1.04451 1.03709 1.21335 0.96673 0.80912 1.01091 1.45203 1.03565 1.10636 1.78515 1.16709 0.83883 0.83392 0.77763 1.91015 1.56483 1.44675 1.55550 1.44455 1.10052 1.08094 1.72358 1.23187 0.80346 0.94734 0.74015 1.90753 1.55490 1.47658 1.42407 1.20814 0.86032 0.87707 1.00037 0.87037 1.22178 0.98260 1.01233 0.96914 1.43697 0.98813 1.56534 1.29781 1.17823 1.21048 1.13471 0.84914 0.97412 1.25132 0.99050 0.94740 0.97763 1.70414 1.46063 1.16939 1.14922 0.86859 0.77666 0.84396 0.80775 1.20953 1.20557 1.23805 1.21334 0.92758 0.90563 0.89033 1.22708 0.97185 0.98874 0.98544 1.22371 0.96736 0.97925 0.97697 1.22190 0.97048 0.99142 0.96711 1.22491 0.94552 0.97435 1.02256 0.90433 0.89487 0.90904 0.92789 0.93540 0.74424 0.73484 0.91837 0.94698 0.91488 0.93643 0.91106 0.94703 0.92754 0.89823 0.92346 0.90979 0.94757 0.92224 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.03 71.98 0.72 -0.87 16 2 C 0.12 2.59 6.39 86.38 0.55 3.14 16 3 N -0.72 -16.36 5.56 -478.59 -2.66 -19.02 16 4 C 0.68 24.51 8.50 179.06 1.52 26.03 16 5 O -0.60 -29.91 14.74 18.92 0.28 -29.63 16 6 N -0.68 -22.12 5.14 -440.54 -2.26 -24.38 16 7 C 0.49 21.47 6.95 87.66 0.61 22.08 16 8 O -0.50 -28.26 13.38 19.89 0.27 -27.99 16 9 C 0.17 6.55 3.17 44.24 0.14 6.69 16 10 H 0.11 3.46 7.58 -2.39 -0.02 3.44 16 11 C -0.13 -4.83 7.49 71.98 0.54 -4.29 16 12 N -0.57 -26.59 2.15 -654.38 -1.41 -28.00 16 13 C -0.24 -13.48 5.60 84.03 0.47 -13.01 16 14 H 0.01 0.53 6.88 -2.91 -0.02 0.51 16 15 C 0.04 1.99 3.54 84.86 0.30 2.29 16 16 N -0.85 -44.56 9.97 21.65 0.22 -44.35 16 17 Si 0.87 47.28 29.68 68.60 2.04 49.32 16 18 H -0.28 -15.05 7.11 99.48 0.71 -14.35 16 19 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.31 -18.99 7.11 99.48 0.71 -18.29 16 21 C 0.17 6.74 3.44 45.72 0.16 6.90 16 22 C -0.13 -5.27 6.41 31.67 0.20 -5.07 16 23 C -0.11 -3.51 6.91 31.89 0.22 -3.29 16 24 C -0.11 -3.99 6.83 31.67 0.22 -3.77 16 25 C -0.13 -5.01 6.28 31.32 0.20 -4.82 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.42 5.58 8.49 -92.71 -0.79 4.79 16 32 H 0.43 8.75 8.31 -92.71 -0.77 7.98 16 33 H 0.06 1.74 7.82 -2.39 -0.02 1.72 16 34 H 0.03 1.60 5.47 -2.39 -0.01 1.59 16 35 H 0.07 2.78 7.41 -2.39 -0.02 2.76 16 36 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 37 H 0.07 2.43 7.59 -2.39 -0.02 2.41 16 38 H 0.03 1.67 6.35 -2.38 -0.02 1.66 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.06 3.14 6.79 -2.39 -0.02 3.12 16 Total: -1.00 -82.19 354.04 1.75 -80.43 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -0.56 Total: 11.60 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 5.85 Total: 32.02 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -6.12 Total: -115.75 kcal Atomic # 8 Polarization: -58.17 SS G_CDS: 0.55 Total: -57.62 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.04 Total: 49.32 kcal Total: -82.19 1.75 -80.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080215613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.437 kcal (2) G-P(sol) polarization free energy of solvation -82.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds