Wall clock time and date at job start Tue Mar 31 2020 03:38:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46901 * 109.47030 * 2 1
4 4 C 1.46897 * 110.99775 * 297.50442 * 3 2 1
5 5 C 1.50695 * 109.47454 * 292.34725 * 4 3 2
6 6 H 1.08001 * 119.99858 * 354.96353 * 5 4 3
7 7 C 1.37878 * 120.00007 * 174.95513 * 5 4 3
8 8 N 1.31507 * 120.00227 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 119.99705 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47019 * 90.00591 * 9 7 5
11 11 H 1.48503 * 109.46921 * 210.00337 * 9 7 5
12 12 H 1.48497 * 109.47675 * 330.00389 * 9 7 5
13 13 C 1.46894 * 111.00097 * 61.46091 * 3 2 1
14 14 C 1.50704 * 109.47261 * 66.04721 * 13 3 2
15 15 O 1.21236 * 119.99850 * 359.97438 * 14 13 3
16 16 N 1.34776 * 119.99880 * 180.02562 * 14 13 3
17 17 C 1.34780 * 119.99545 * 180.02562 * 16 14 13
18 18 O 1.21533 * 120.00339 * 359.97438 * 17 16 14
19 19 N 1.34776 * 119.99545 * 179.97438 * 17 16 14
20 20 C 1.46503 * 119.99893 * 179.97438 * 19 17 16
21 21 C 1.54275 * 110.03020 * 272.63200 * 20 19 17
22 22 C 1.54968 * 104.15662 * 217.13319 * 21 20 19
23 23 C 1.54885 * 102.77600 * 37.89070 * 22 21 20
24 24 C 1.53875 * 110.03487 * 155.41575 * 20 19 17
25 25 H 1.08993 * 109.46944 * 59.08531 * 1 2 3
26 26 H 1.08997 * 109.46927 * 179.08581 * 1 2 3
27 27 H 1.08997 * 109.47135 * 299.08878 * 1 2 3
28 28 H 1.08997 * 109.47080 * 239.99666 * 2 1 3
29 29 H 1.08996 * 109.46668 * 119.99803 * 2 1 3
30 30 H 1.09003 * 109.47267 * 52.35449 * 4 3 2
31 31 H 1.09002 * 109.46959 * 172.34801 * 4 3 2
32 32 H 0.96998 * 120.00397 * 179.97438 * 8 7 5
33 33 H 1.08997 * 109.47448 * 306.04258 * 13 3 2
34 34 H 1.09007 * 109.47146 * 186.04394 * 13 3 2
35 35 H 0.96998 * 120.00505 * 359.97438 * 16 14 13
36 36 H 0.97003 * 120.00411 * 359.71995 * 19 17 16
37 37 H 1.08995 * 110.01708 * 34.01667 * 20 19 17
38 38 H 1.08999 * 110.48409 * 335.77831 * 21 20 19
39 39 H 1.08995 * 110.48759 * 98.42921 * 21 20 19
40 40 H 1.08993 * 110.71911 * 279.57166 * 22 21 20
41 41 H 1.09003 * 110.91837 * 156.29373 * 22 21 20
42 42 H 1.09005 * 110.48545 * 203.40587 * 23 22 21
43 43 H 1.08998 * 110.60252 * 80.81511 * 23 22 21
44 44 H 1.08997 * 110.02960 * 238.57031 * 24 20 19
45 45 H 1.08997 * 110.02840 * 359.97438 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5980 2.0924 -1.2164
5 6 2.3003 1.5001 -2.4110
6 1 3.0508 0.7360 -2.2721
7 6 1.9846 1.9337 -3.6812
8 7 1.0711 2.8644 -3.8503
9 14 2.8547 1.1990 -5.1619
10 1 2.0964 0.0173 -5.6456
11 1 2.9332 2.2135 -6.2436
12 1 4.2261 0.7822 -4.7739
13 6 1.5775 2.0997 1.2047
14 6 2.2291 1.4891 2.4187
15 8 2.9866 0.5510 2.2928
16 7 1.9689 1.9854 3.6445
17 6 2.5521 1.4396 4.7301
18 8 3.3122 0.4997 4.6038
19 7 2.2923 1.9361 5.9558
20 6 2.9257 1.3426 7.1360
21 6 2.0734 0.1676 7.6585
22 6 2.1967 0.2660 9.2001
23 6 2.1816 1.7948 9.4480
24 6 2.9949 2.3767 8.2734
25 1 -0.3633 0.5279 -0.8816
26 1 -0.3633 -1.0275 -0.0164
27 1 -0.3633 0.4996 0.8980
28 1 1.8934 -0.5139 -0.8899
29 1 1.8933 -0.5138 0.8900
30 1 0.5200 1.9901 -1.3410
31 1 1.8552 3.1481 -1.1303
32 1 0.8493 3.1697 -4.7438
33 1 0.4941 2.0222 1.2961
34 1 1.8615 3.1494 1.1293
35 1 1.3625 2.7357 3.7454
36 1 1.6887 2.6889 6.0563
37 1 3.9279 0.9946 6.8862
38 1 1.0342 0.2838 7.3508
39 1 2.4737 -0.7818 7.3029
40 1 3.1351 -0.1714 9.5405
41 1 1.3488 -0.2131 9.6897
42 1 2.6606 2.0320 10.3980
43 1 1.1606 2.1761 9.4309
44 1 4.0307 2.5300 8.5760
45 1 2.5575 3.3203 7.9471
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000081039051.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:55
Heat of formation + Delta-G solvation = -61.084621 kcal
Electronic energy + Delta-G solvation = -24276.609035 eV
Core-core repulsion = 20715.329467 eV
Total energy + Delta-G solvation = -3561.279568 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.06802 -39.18441 -37.79385 -36.35560 -34.48147 -33.56134 -32.57105 -29.83041
-29.10835 -28.53645 -27.71848 -25.41376 -23.17442 -22.53684 -21.08569 -20.65516
-20.32635 -19.70489 -18.55929 -16.97856 -16.30279 -16.13532 -16.03474 -15.68858
-15.13190 -14.83522 -14.63148 -14.29360 -14.16861 -13.76097 -13.69670 -13.36646
-12.82123 -12.41887 -12.27278 -11.88921 -11.78312 -11.56339 -11.52560 -11.43101
-11.17582 -11.14046 -11.01086 -10.98571 -10.75693 -10.69983 -10.50251 -10.10000
-9.93962 -9.77567 -9.35461 -9.26071 -9.02999 -8.42398 -7.21104 -6.02234
-4.02218 2.35021 2.36056 3.34498 3.40468 3.40514 3.46736 3.83936
4.17052 4.26146 4.45265 4.50839 4.90733 4.99541 5.01642 5.07802
5.14390 5.17114 5.26877 5.33840 5.40494 5.52229 5.62069 5.66750
5.67524 5.75611 5.87647 5.88205 5.93376 6.05971 6.14809 6.18355
6.33310 6.49064 6.57168 6.70566 7.01337 7.24998 7.39454 7.50969
7.82163 8.05330 8.16553 8.33594 8.42154 8.53718 9.06486 9.61929
11.08508
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.041968 B = 0.002539 C = 0.002526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 667.008011 B =11026.745622 C =11083.707889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.053 3.947
3 N -0.518 5.518
4 C 0.189 3.811
5 C -0.502 4.502
6 H 0.065 0.935
7 C 0.055 3.945
8 N -0.901 5.901
9 Si 0.898 3.102
10 H -0.281 1.281
11 H -0.287 1.287
12 H -0.272 1.272
13 C 0.036 3.964
14 C 0.513 3.487
15 O -0.445 6.445
16 N -0.696 5.696
17 C 0.693 3.307
18 O -0.532 6.532
19 N -0.737 5.737
20 C 0.156 3.844
21 C -0.137 4.137
22 C -0.125 4.125
23 C -0.124 4.124
24 C -0.131 4.131
25 H 0.069 0.931
26 H 0.049 0.951
27 H 0.038 0.962
28 H 0.083 0.917
29 H 0.070 0.930
30 H 0.006 0.994
31 H 0.026 0.974
32 H 0.261 0.739
33 H 0.063 0.937
34 H 0.102 0.898
35 H 0.406 0.594
36 H 0.396 0.604
37 H 0.093 0.907
38 H 0.070 0.930
39 H 0.073 0.927
40 H 0.069 0.931
41 H 0.068 0.932
42 H 0.067 0.933
43 H 0.067 0.933
44 H 0.076 0.924
45 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.183 1.875 26.037 26.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.075 4.075
3 N -0.243 5.243
4 C 0.065 3.935
5 C -0.541 4.541
6 H 0.083 0.917
7 C -0.146 4.146
8 N -0.541 5.541
9 Si 0.725 3.275
10 H -0.208 1.208
11 H -0.213 1.213
12 H -0.197 1.197
13 C -0.096 4.096
14 C 0.299 3.701
15 O -0.310 6.310
16 N -0.364 5.364
17 C 0.393 3.607
18 O -0.403 6.403
19 N -0.395 5.395
20 C 0.051 3.949
21 C -0.175 4.175
22 C -0.163 4.163
23 C -0.162 4.162
24 C -0.169 4.169
25 H 0.088 0.912
26 H 0.068 0.932
27 H 0.057 0.943
28 H 0.101 0.899
29 H 0.089 0.911
30 H 0.024 0.976
31 H 0.044 0.956
32 H 0.070 0.930
33 H 0.080 0.920
34 H 0.120 0.880
35 H 0.240 0.760
36 H 0.230 0.770
37 H 0.111 0.889
38 H 0.089 0.911
39 H 0.091 0.909
40 H 0.088 0.912
41 H 0.087 0.913
42 H 0.086 0.914
43 H 0.085 0.915
44 H 0.094 0.906
45 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.521 0.474 25.624 25.673
hybrid contribution -1.264 0.680 -0.753 1.621
sum -2.785 1.154 24.871 25.053
Atomic orbital electron populations
1.22417 0.99750 1.01225 1.01415 1.22151 0.91478 0.90891 1.02984
1.62107 1.59212 1.02109 1.00830 1.19848 0.95009 0.93653 0.85023
1.21141 1.21286 1.21767 0.89918 0.91714 1.24962 0.95345 0.95264
0.99020 1.69943 1.32129 1.29595 1.22420 0.86497 0.80205 0.78682
0.82070 1.20752 1.21330 1.19712 1.22006 0.97898 0.99719 0.89998
1.21336 0.82052 0.83785 0.82964 1.90775 1.30996 1.24576 1.84629
1.44396 1.47894 1.36690 1.07373 1.16238 0.81176 0.82856 0.80439
1.91060 1.36796 1.27654 1.84785 1.45498 1.51425 1.37682 1.04890
1.21558 0.97514 0.92696 0.83167 1.22838 1.00520 0.98999 0.95188
1.22493 1.02105 0.96031 0.95644 1.22355 1.00207 0.95701 0.97900
1.22445 1.01468 0.98210 0.94806 0.91221 0.93194 0.94260 0.89850
0.91148 0.97599 0.95599 0.92986 0.91987 0.88036 0.75988 0.76999
0.88897 0.91142 0.90869 0.91212 0.91338 0.91396 0.91467 0.90552
0.90975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.46 9.26 37.16 0.34 -3.12 16
2 C 0.05 1.11 5.55 -3.82 -0.02 1.09 16
3 N -0.52 -11.39 4.43 -237.52 -1.05 -12.44 16
4 C 0.19 4.77 4.54 -4.98 -0.02 4.75 16
5 C -0.50 -14.12 8.40 -34.44 -0.29 -14.41 16
6 H 0.06 1.86 7.42 -52.49 -0.39 1.47 16
7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16
8 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16
9 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16
10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
13 C 0.04 0.60 5.23 -4.98 -0.03 0.58 16
14 C 0.51 8.73 7.48 -10.98 -0.08 8.65 16
15 O -0.44 -9.84 12.72 -18.21 -0.23 -10.07 16
16 N -0.70 -8.52 5.24 -15.78 -0.08 -8.60 16
17 C 0.69 9.55 8.50 -86.92 -0.74 8.81 16
18 O -0.53 -10.28 14.40 -18.47 -0.27 -10.54 16
19 N -0.74 -6.53 5.05 -57.59 -0.29 -6.82 16
20 C 0.16 1.33 3.24 -66.81 -0.22 1.12 16
21 C -0.14 -1.13 6.54 -25.03 -0.16 -1.30 16
22 C -0.12 -0.76 6.91 -24.70 -0.17 -0.93 16
23 C -0.12 -0.62 6.83 -25.08 -0.17 -0.79 16
24 C -0.13 -0.74 6.57 -25.61 -0.17 -0.91 16
25 H 0.07 1.42 6.26 -51.93 -0.32 1.10 16
26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.04 0.63 6.35 -51.93 -0.33 0.30 16
28 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16
29 H 0.07 1.50 5.86 -51.93 -0.30 1.19 16
30 H 0.01 0.16 6.00 -51.93 -0.31 -0.15 16
31 H 0.03 0.68 7.90 -51.93 -0.41 0.27 16
32 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16
33 H 0.06 0.92 6.06 -51.93 -0.31 0.61 16
34 H 0.10 1.53 7.91 -51.92 -0.41 1.12 16
35 H 0.41 2.93 8.71 -40.82 -0.36 2.57 16
36 H 0.40 2.10 8.32 -40.82 -0.34 1.76 16
37 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16
38 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16
39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16
44 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16
45 H 0.07 0.33 7.61 -51.93 -0.40 -0.06 16
LS Contribution 356.81 15.07 5.38 5.38
Total: -1.00 -36.31 356.81 -9.81 -46.12
By element:
Atomic # 1 Polarization: 7.85 SS G_CDS: -7.16 Total: 0.70 kcal
Atomic # 6 Polarization: 6.82 SS G_CDS: -1.82 Total: 5.00 kcal
Atomic # 7 Polarization: -52.73 SS G_CDS: -0.69 Total: -53.42 kcal
Atomic # 8 Polarization: -20.12 SS G_CDS: -0.50 Total: -20.62 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -36.31 -9.81 -46.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081039051.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.966 kcal
(2) G-P(sol) polarization free energy of solvation -36.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.085 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds