Wall clock time and date at job start Tue Mar 31 2020 03:38:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46901 * 109.47030 * 2 1
4 4 C 1.46897 * 110.99775 * 297.50442 * 3 2 1
5 5 C 1.50695 * 109.47454 * 292.34725 * 4 3 2
6 6 H 1.08001 * 119.99858 * 354.96353 * 5 4 3
7 7 C 1.37878 * 120.00007 * 174.95513 * 5 4 3
8 8 N 1.31507 * 120.00227 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 119.99705 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47019 * 90.00591 * 9 7 5
11 11 H 1.48503 * 109.46921 * 210.00337 * 9 7 5
12 12 H 1.48497 * 109.47675 * 330.00389 * 9 7 5
13 13 C 1.46894 * 111.00097 * 61.46091 * 3 2 1
14 14 C 1.50704 * 109.47261 * 66.04721 * 13 3 2
15 15 O 1.21236 * 119.99850 * 359.97438 * 14 13 3
16 16 N 1.34776 * 119.99880 * 180.02562 * 14 13 3
17 17 C 1.34780 * 119.99545 * 180.02562 * 16 14 13
18 18 O 1.21533 * 120.00339 * 359.97438 * 17 16 14
19 19 N 1.34776 * 119.99545 * 179.97438 * 17 16 14
20 20 C 1.46503 * 119.99893 * 179.97438 * 19 17 16
21 21 C 1.54275 * 110.03020 * 272.63200 * 20 19 17
22 22 C 1.54968 * 104.15662 * 217.13319 * 21 20 19
23 23 C 1.54885 * 102.77600 * 37.89070 * 22 21 20
24 24 C 1.53875 * 110.03487 * 155.41575 * 20 19 17
25 25 H 1.08993 * 109.46944 * 59.08531 * 1 2 3
26 26 H 1.08997 * 109.46927 * 179.08581 * 1 2 3
27 27 H 1.08997 * 109.47135 * 299.08878 * 1 2 3
28 28 H 1.08997 * 109.47080 * 239.99666 * 2 1 3
29 29 H 1.08996 * 109.46668 * 119.99803 * 2 1 3
30 30 H 1.09003 * 109.47267 * 52.35449 * 4 3 2
31 31 H 1.09002 * 109.46959 * 172.34801 * 4 3 2
32 32 H 0.96998 * 120.00397 * 179.97438 * 8 7 5
33 33 H 1.08997 * 109.47448 * 306.04258 * 13 3 2
34 34 H 1.09007 * 109.47146 * 186.04394 * 13 3 2
35 35 H 0.96998 * 120.00505 * 359.97438 * 16 14 13
36 36 H 0.97003 * 120.00411 * 359.71995 * 19 17 16
37 37 H 1.08995 * 110.01708 * 34.01667 * 20 19 17
38 38 H 1.08999 * 110.48409 * 335.77831 * 21 20 19
39 39 H 1.08995 * 110.48759 * 98.42921 * 21 20 19
40 40 H 1.08993 * 110.71911 * 279.57166 * 22 21 20
41 41 H 1.09003 * 110.91837 * 156.29373 * 22 21 20
42 42 H 1.09005 * 110.48545 * 203.40587 * 23 22 21
43 43 H 1.08998 * 110.60252 * 80.81511 * 23 22 21
44 44 H 1.08997 * 110.02960 * 238.57031 * 24 20 19
45 45 H 1.08997 * 110.02840 * 359.97438 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.5980 2.0924 -1.2164
5 6 2.3003 1.5001 -2.4110
6 1 3.0508 0.7360 -2.2721
7 6 1.9846 1.9337 -3.6812
8 7 1.0711 2.8644 -3.8503
9 14 2.8547 1.1990 -5.1619
10 1 2.0964 0.0173 -5.6456
11 1 2.9332 2.2135 -6.2436
12 1 4.2261 0.7822 -4.7739
13 6 1.5775 2.0997 1.2047
14 6 2.2291 1.4891 2.4187
15 8 2.9866 0.5510 2.2928
16 7 1.9689 1.9854 3.6445
17 6 2.5521 1.4396 4.7301
18 8 3.3122 0.4997 4.6038
19 7 2.2923 1.9361 5.9558
20 6 2.9257 1.3426 7.1360
21 6 2.0734 0.1676 7.6585
22 6 2.1967 0.2660 9.2001
23 6 2.1816 1.7948 9.4480
24 6 2.9949 2.3767 8.2734
25 1 -0.3633 0.5279 -0.8816
26 1 -0.3633 -1.0275 -0.0164
27 1 -0.3633 0.4996 0.8980
28 1 1.8934 -0.5139 -0.8899
29 1 1.8933 -0.5138 0.8900
30 1 0.5200 1.9901 -1.3410
31 1 1.8552 3.1481 -1.1303
32 1 0.8493 3.1697 -4.7438
33 1 0.4941 2.0222 1.2961
34 1 1.8615 3.1494 1.1293
35 1 1.3625 2.7357 3.7454
36 1 1.6887 2.6889 6.0563
37 1 3.9279 0.9946 6.8862
38 1 1.0342 0.2838 7.3508
39 1 2.4737 -0.7818 7.3029
40 1 3.1351 -0.1714 9.5405
41 1 1.3488 -0.2131 9.6897
42 1 2.6606 2.0320 10.3980
43 1 1.1606 2.1761 9.4309
44 1 4.0307 2.5300 8.5760
45 1 2.5575 3.3203 7.9471
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000081039051.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:55
Heat of formation + Delta-G solvation = -87.829490 kcal
Electronic energy + Delta-G solvation = -24277.768779 eV
Core-core repulsion = 20715.329467 eV
Total energy + Delta-G solvation = -3562.439312 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.25630 -40.27932 -38.85086 -37.87586 -35.74242 -34.69180 -34.46687 -31.36372
-30.21865 -29.64082 -28.62832 -27.08509 -24.98551 -23.81342 -21.79820 -21.53245
-21.36532 -21.11512 -19.68747 -18.42665 -18.06560 -17.40976 -17.08820 -16.67262
-16.47735 -16.33683 -15.89144 -15.83482 -15.25336 -15.10026 -14.69455 -14.41070
-14.25208 -14.18411 -13.46576 -13.13242 -13.09617 -12.92567 -12.70445 -12.60758
-12.51954 -12.50986 -12.08404 -12.00496 -11.95209 -11.92394 -11.76040 -11.55883
-11.44356 -11.34970 -11.15481 -10.58923 -10.56441 -10.12003 -8.91986 -8.17896
-6.25016 1.06343 1.29961 1.41193 1.41886 1.53834 2.23871 2.42109
2.88755 3.14920 3.38182 3.60195 3.71193 3.77209 4.00702 4.20811
4.26334 4.41553 4.44569 4.51323 4.52994 4.54958 4.63216 4.63590
4.79030 4.89334 4.90309 4.98777 5.02359 5.07696 5.16410 5.24420
5.26975 5.29590 5.35493 5.46666 5.50089 5.52147 5.61442 5.70592
6.09156 6.32624 6.54010 6.70041 6.89565 7.16952 7.37915 7.43397
8.91899
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.041968 B = 0.002539 C = 0.002526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 667.008011 B =11026.745622 C =11083.707889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.058 3.942
3 N -0.541 5.541
4 C 0.206 3.794
5 C -0.522 4.522
6 H 0.049 0.951
7 C 0.010 3.990
8 N -0.927 5.927
9 Si 0.959 3.041
10 H -0.274 1.274
11 H -0.279 1.279
12 H -0.274 1.274
13 C 0.037 3.963
14 C 0.522 3.478
15 O -0.502 6.502
16 N -0.673 5.673
17 C 0.689 3.311
18 O -0.590 6.590
19 N -0.710 5.710
20 C 0.150 3.850
21 C -0.137 4.137
22 C -0.122 4.122
23 C -0.118 4.118
24 C -0.123 4.123
25 H 0.046 0.954
26 H 0.067 0.933
27 H 0.064 0.936
28 H 0.054 0.946
29 H 0.068 0.932
30 H -0.005 1.005
31 H 0.013 0.987
32 H 0.264 0.736
33 H 0.092 0.908
34 H 0.123 0.877
35 H 0.433 0.567
36 H 0.418 0.582
37 H 0.063 0.937
38 H 0.072 0.928
39 H 0.045 0.955
40 H 0.067 0.933
41 H 0.077 0.923
42 H 0.080 0.920
43 H 0.078 0.922
44 H 0.079 0.921
45 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.454 3.254 27.787 28.329
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.070 4.070
3 N -0.265 5.265
4 C 0.081 3.919
5 C -0.560 4.560
6 H 0.067 0.933
7 C -0.189 4.189
8 N -0.568 5.568
9 Si 0.784 3.216
10 H -0.200 1.200
11 H -0.204 1.204
12 H -0.199 1.199
13 C -0.094 4.094
14 C 0.308 3.692
15 O -0.371 6.371
16 N -0.342 5.342
17 C 0.390 3.610
18 O -0.466 6.466
19 N -0.369 5.369
20 C 0.045 3.955
21 C -0.176 4.176
22 C -0.160 4.160
23 C -0.155 4.155
24 C -0.161 4.161
25 H 0.065 0.935
26 H 0.086 0.914
27 H 0.083 0.917
28 H 0.072 0.928
29 H 0.086 0.914
30 H 0.013 0.987
31 H 0.031 0.969
32 H 0.073 0.927
33 H 0.110 0.890
34 H 0.141 0.859
35 H 0.272 0.728
36 H 0.256 0.744
37 H 0.081 0.919
38 H 0.091 0.909
39 H 0.064 0.936
40 H 0.086 0.914
41 H 0.096 0.904
42 H 0.099 0.901
43 H 0.097 0.903
44 H 0.098 0.902
45 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -2.857 1.932 27.444 27.660
hybrid contribution -0.874 0.266 -1.188 1.498
sum -3.730 2.198 26.256 26.611
Atomic orbital electron populations
1.22276 0.97404 1.02434 1.01462 1.22011 0.93351 0.90288 1.01365
1.61884 1.60441 1.02612 1.01588 1.19488 0.93840 0.92813 0.85794
1.21399 1.21350 1.21685 0.91616 0.93283 1.25701 0.95989 0.95603
1.01591 1.70023 1.33062 1.30441 1.23223 0.85542 0.78934 0.78233
0.78864 1.19961 1.20382 1.19890 1.22091 0.99484 1.00051 0.87797
1.21302 0.80909 0.82777 0.84170 1.90770 1.33573 1.27173 1.85587
1.43935 1.47645 1.36911 1.05700 1.16457 0.80609 0.82312 0.81643
1.91037 1.39436 1.30413 1.85688 1.45321 1.50778 1.37506 1.03261
1.21678 0.96041 0.94088 0.83713 1.22801 1.00189 0.97518 0.97105
1.22488 1.02463 0.97417 0.93599 1.22351 1.00875 0.94285 0.98010
1.22417 1.02202 0.97875 0.93618 0.93499 0.91412 0.91702 0.92775
0.91400 0.98689 0.96922 0.92665 0.89042 0.85920 0.72781 0.74375
0.91883 0.90898 0.93639 0.91389 0.90430 0.90114 0.90295 0.90208
0.89072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -6.31 9.26 71.98 0.67 -5.65 16
2 C 0.06 2.47 5.55 86.31 0.48 2.95 16
3 N -0.54 -23.91 4.43 -905.37 -4.01 -27.92 16
4 C 0.21 10.52 4.54 85.56 0.39 10.91 16
5 C -0.52 -29.93 8.40 25.60 0.21 -29.71 16
6 H 0.05 2.90 7.42 -2.91 -0.02 2.88 16
7 C 0.01 0.54 5.46 84.66 0.46 1.01 16
8 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16
9 Si 0.96 45.12 29.54 68.60 2.03 47.15 16
10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16
13 C 0.04 1.19 5.23 85.56 0.45 1.64 16
14 C 0.52 17.34 7.48 87.66 0.66 18.00 16
15 O -0.50 -22.67 12.72 19.87 0.25 -22.42 16
16 N -0.67 -15.27 5.24 -440.52 -2.31 -17.58 16
17 C 0.69 18.52 8.50 179.05 1.52 20.04 16
18 O -0.59 -23.52 14.40 18.94 0.27 -23.25 16
19 N -0.71 -11.31 5.05 -454.39 -2.29 -13.60 16
20 C 0.15 2.43 3.24 45.72 0.15 2.58 16
21 C -0.14 -2.21 6.54 31.70 0.21 -2.00 16
22 C -0.12 -1.28 6.91 31.91 0.22 -1.05 16
23 C -0.12 -0.81 6.83 31.67 0.22 -0.59 16
24 C -0.12 -1.06 6.57 31.32 0.21 -0.86 16
25 H 0.05 1.89 6.26 -2.39 -0.01 1.88 16
26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
27 H 0.06 1.94 6.35 -2.39 -0.02 1.93 16
28 H 0.05 2.57 7.01 -2.39 -0.02 2.55 16
29 H 0.07 2.95 5.86 -2.39 -0.01 2.93 16
30 H 0.00 -0.24 6.00 -2.39 -0.01 -0.25 16
31 H 0.01 0.67 7.90 -2.39 -0.02 0.66 16
32 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16
33 H 0.09 2.44 6.06 -2.39 -0.01 2.43 16
34 H 0.12 3.43 7.91 -2.38 -0.02 3.41 16
35 H 0.43 4.80 8.71 -92.71 -0.81 3.99 16
36 H 0.42 3.01 8.32 -92.71 -0.77 2.23 16
37 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16
38 H 0.07 1.12 8.05 -2.39 -0.02 1.10 16
39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
42 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16
43 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16
44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
45 H 0.09 0.47 7.61 -2.39 -0.02 0.45 16
Total: -1.00 -82.32 356.81 -0.51 -82.83
By element:
Atomic # 1 Polarization: 12.02 SS G_CDS: -0.57 Total: 11.45 kcal
Atomic # 6 Polarization: 11.42 SS G_CDS: 5.83 Total: 17.25 kcal
Atomic # 7 Polarization: -104.69 SS G_CDS: -8.33 Total: -113.02 kcal
Atomic # 8 Polarization: -46.19 SS G_CDS: 0.53 Total: -45.67 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -82.32 -0.51 -82.83 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081039051.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.998 kcal
(2) G-P(sol) polarization free energy of solvation -82.323 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.321 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds