Wall clock time and date at job start Tue Mar 31 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47503 * 2 1 4 4 C 1.47015 * 110.99867 * 293.62862 * 3 2 1 5 5 C 1.53099 * 109.26097 * 177.60596 * 4 3 2 6 6 O 1.43020 * 109.25515 * 56.84950 * 5 4 3 7 7 C 1.43018 * 113.74153 * 301.33177 * 6 5 4 8 8 H 1.09002 * 109.54123 * 298.71588 * 7 6 5 9 9 C 1.50701 * 109.50570 * 178.60397 * 7 6 5 10 10 O 1.21274 * 120.00163 * 352.65709 * 9 7 6 11 11 N 1.34779 * 119.99719 * 172.66121 * 9 7 6 12 12 C 1.46965 * 120.59025 * 174.39965 * 11 9 7 13 13 C 1.53369 * 108.63073 * 125.04754 * 12 11 9 14 14 N 1.46971 * 108.63508 * 49.42411 * 13 12 11 15 15 C 1.36938 * 120.59253 * 124.79340 * 14 13 12 16 16 H 1.07996 * 120.00168 * 328.60561 * 15 14 13 17 17 C 1.38815 * 119.99887 * 148.60803 * 15 14 13 18 18 N 1.31617 * 119.99952 * 163.10469 * 17 15 14 19 19 Si 1.86794 * 119.99908 * 343.09901 * 17 15 14 20 20 H 1.48499 * 109.47384 * 90.43823 * 19 17 15 21 21 H 1.48497 * 109.47446 * 210.44105 * 19 17 15 22 22 H 1.48501 * 109.47311 * 330.43568 * 19 17 15 23 23 C 1.46961 * 118.81084 * 304.77052 * 14 13 12 24 24 C 1.46961 * 120.59475 * 354.68080 * 11 9 7 25 25 C 1.47015 * 111.00136 * 169.99846 * 3 2 1 26 26 H 1.08993 * 109.47656 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47117 * 300.00380 * 1 2 3 28 28 H 1.09001 * 109.46420 * 59.99870 * 1 2 3 29 29 H 1.09000 * 109.47117 * 239.99620 * 2 1 3 30 30 H 1.09002 * 109.46655 * 119.99637 * 2 1 3 31 31 H 1.08993 * 109.51280 * 297.54438 * 4 3 2 32 32 H 1.09002 * 109.50478 * 57.63478 * 4 3 2 33 33 H 1.08999 * 109.51301 * 176.78648 * 5 4 3 34 34 H 1.09004 * 109.50603 * 296.91961 * 5 4 3 35 35 H 1.08999 * 109.60734 * 244.78924 * 12 11 9 36 36 H 1.08997 * 109.61185 * 5.30599 * 12 11 9 37 37 H 1.08995 * 109.61442 * 289.67949 * 13 12 11 38 38 H 1.09004 * 109.60890 * 169.16793 * 13 12 11 39 39 H 0.96997 * 119.99845 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.61095 * 295.48001 * 23 14 13 41 41 H 1.08997 * 109.60847 * 174.96956 * 23 14 13 42 42 H 1.09004 * 109.60982 * 354.69731 * 24 11 9 43 43 H 1.08997 * 109.61328 * 115.20608 * 24 11 9 44 44 H 1.09001 * 109.50872 * 62.45435 * 25 3 2 45 45 H 1.08999 * 109.54081 * 302.34413 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6767 2.0650 -1.2574 5 6 2.1517 3.5189 -1.1911 6 8 3.5573 3.5443 -0.9277 7 6 3.9268 2.8913 0.2898 8 1 3.4496 3.3926 1.1318 9 6 5.4238 2.9445 0.4550 10 8 6.1186 3.3671 -0.4447 11 7 5.9905 2.5222 1.6026 12 6 7.4527 2.4529 1.7334 13 6 7.8739 3.2686 2.9621 14 7 7.0407 2.8634 4.1029 15 6 7.6164 2.4295 5.2672 16 1 8.5612 1.9070 5.2404 17 6 6.9857 2.6613 6.4818 18 7 7.3419 1.9785 7.5492 19 14 5.6314 3.9422 6.6015 20 1 4.3186 3.3011 6.3356 21 1 5.6271 4.5323 7.9642 22 1 5.8718 5.0119 5.5998 23 6 5.5785 2.9327 3.9720 24 6 5.1573 2.1171 2.7434 25 6 3.4697 1.4310 0.2384 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.1664 1.5598 -2.0899 32 1 0.5965 2.0407 -1.4015 33 1 1.9508 4.0114 -2.1425 34 1 1.6224 4.0387 -0.3925 35 1 7.7598 1.4149 1.8606 36 1 7.9200 2.8686 0.8407 37 1 7.7302 4.3305 2.7631 38 1 8.9226 3.0748 3.1878 39 1 6.9009 2.1402 8.3978 40 1 5.2714 3.9708 3.8449 41 1 5.1113 2.5171 4.8647 42 1 4.1087 2.3109 2.5176 43 1 5.3010 1.0551 2.9425 44 1 3.9881 0.9156 -0.5702 45 1 3.6990 0.9443 1.1863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081422348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:42 Heat of formation + Delta-G solvation = -28.256999 kcal Electronic energy + Delta-G solvation = -25768.884819 eV Core-core repulsion = 22209.028764 eV Total energy + Delta-G solvation = -3559.856055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58299 -39.02733 -37.12622 -36.23709 -34.10521 -32.31927 -31.33490 -31.15664 -30.58661 -27.77910 -26.66481 -24.68208 -23.66992 -23.27908 -22.58563 -20.96948 -20.50072 -18.94756 -17.52633 -16.85009 -16.47230 -16.17571 -15.82673 -15.59399 -15.32957 -14.90850 -14.60676 -14.38364 -14.22790 -14.18235 -13.80483 -13.71966 -13.03168 -12.85885 -12.61647 -12.32519 -12.21941 -12.13075 -12.06726 -11.86411 -11.67974 -11.17465 -11.12517 -11.00506 -10.94955 -10.43529 -10.34813 -10.10042 -9.85821 -9.62150 -9.42357 -8.88652 -8.73353 -8.38049 -6.99239 -6.03391 -3.45763 2.68268 2.85269 3.22165 3.42129 3.44628 3.45606 3.85869 4.43493 4.47465 4.59368 4.63479 4.72131 4.78725 4.85280 4.94966 5.01793 5.13547 5.18007 5.24208 5.30064 5.38092 5.40783 5.50401 5.54336 5.59012 5.60923 5.67897 5.73421 5.79697 5.89579 5.98209 6.03849 6.14335 6.36706 6.45172 6.58305 6.63486 6.67258 6.76750 6.95916 7.63250 7.88027 8.25171 8.34578 8.82781 9.60953 9.98710 11.12376 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.004550 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.806862 B = 6152.537456 C = 6920.253233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.079 3.921 8 H 0.092 0.908 9 C 0.520 3.480 10 O -0.531 6.531 11 N -0.596 5.596 12 C 0.096 3.904 13 C 0.134 3.866 14 N -0.605 5.605 15 C -0.265 4.265 16 H 0.087 0.913 17 C 0.027 3.973 18 N -0.907 5.907 19 Si 0.884 3.116 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.111 3.889 24 C 0.084 3.916 25 C 0.028 3.972 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.264 0.736 40 H 0.031 0.969 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 -2.436 -15.615 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.115 4.115 5 C -0.015 4.015 6 O -0.274 6.274 7 C 0.017 3.983 8 H 0.110 0.890 9 C 0.305 3.695 10 O -0.407 6.407 11 N -0.331 5.331 12 C -0.027 4.027 13 C 0.008 3.992 14 N -0.329 5.329 15 C -0.393 4.393 16 H 0.104 0.896 17 C -0.172 4.172 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.196 1.196 23 C -0.015 4.015 24 C -0.040 4.040 25 C -0.101 4.101 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.310 -1.903 -15.636 20.622 hybrid contribution -0.718 0.069 -0.150 0.737 sum -14.028 -1.833 -15.786 21.198 Atomic orbital electron populations 1.21793 0.94515 1.01748 1.02531 1.22116 0.96320 0.88103 1.01273 1.62256 1.12968 1.16692 1.34176 1.22883 1.01902 0.95899 0.90834 1.22742 0.81681 0.95032 1.02074 1.88119 1.23089 1.76650 1.39531 1.21924 0.93472 0.93399 0.89463 0.89045 1.19941 0.88866 0.78252 0.82391 1.90674 1.63710 1.45432 1.40856 1.47948 1.07939 1.64620 1.12547 1.22252 0.78670 1.01391 1.00404 1.21348 0.95869 0.95541 0.86446 1.44275 0.99488 1.76493 1.12653 1.18925 1.07645 1.30652 0.82077 0.89556 1.25377 0.98542 0.98133 0.95160 1.69790 1.43806 1.40714 1.00671 0.86943 0.81637 0.83583 0.76393 1.21349 1.22917 1.19550 1.21767 0.86502 0.97144 0.96109 1.22566 0.93605 1.00600 0.87230 1.22742 0.88189 0.96007 1.03150 0.92096 0.91596 0.92749 0.94683 0.90220 0.93777 0.89157 0.87961 0.92007 0.91282 0.89512 0.95283 0.90431 0.92600 0.95068 0.89677 0.90395 0.90581 0.93293 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.85 37.16 0.37 -0.68 16 2 C 0.05 0.43 5.68 -3.83 -0.02 0.40 16 3 N -0.54 -5.54 4.73 -234.31 -1.11 -6.65 16 4 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 5 C 0.06 0.64 7.01 37.21 0.26 0.90 16 6 O -0.36 -5.28 10.01 -55.00 -0.55 -5.83 16 7 C 0.08 1.12 2.37 -27.83 -0.07 1.06 16 8 H 0.09 1.24 7.07 -51.93 -0.37 0.87 16 9 C 0.52 8.97 7.06 -10.98 -0.08 8.90 16 10 O -0.53 -10.93 15.93 -14.21 -0.23 -11.15 16 11 N -0.60 -10.09 2.95 -172.49 -0.51 -10.60 16 12 C 0.10 1.66 6.60 -3.60 -0.02 1.63 16 13 C 0.13 2.62 6.67 -3.59 -0.02 2.60 16 14 N -0.61 -13.79 2.70 -172.04 -0.46 -14.25 16 15 C -0.26 -7.10 10.02 -15.06 -0.15 -7.25 16 16 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 17 C 0.03 0.76 5.27 -17.43 -0.09 0.67 16 18 N -0.91 -26.93 13.97 55.49 0.78 -26.15 16 19 Si 0.88 21.56 24.34 -169.99 -4.14 17.42 16 20 H -0.29 -6.55 6.58 56.52 0.37 -6.18 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 22 H -0.27 -6.60 6.68 56.52 0.38 -6.22 16 23 C 0.11 2.27 4.35 -3.60 -0.02 2.25 16 24 C 0.08 1.36 5.25 -3.60 -0.02 1.34 16 25 C 0.03 0.33 4.60 -3.71 -0.02 0.31 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.35 6.51 -51.93 -0.34 0.02 16 29 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.66 6.38 -51.93 -0.33 0.33 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.03 0.65 7.11 -51.93 -0.37 0.28 16 41 H 0.09 1.85 4.57 -51.93 -0.24 1.62 16 42 H 0.08 1.05 4.96 -51.93 -0.26 0.79 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.12 6.04 -51.93 -0.31 0.81 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -32.50 338.53 -8.27 -40.76 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.25 Total: -0.89 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 0.10 Total: 12.24 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -1.31 Total: -57.65 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.78 Total: -16.99 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.50 -8.27 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081422348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.504 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds