Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47503 * 2 1 4 4 C 1.47015 * 110.99867 * 293.62862 * 3 2 1 5 5 C 1.53099 * 109.26097 * 177.60596 * 4 3 2 6 6 O 1.43020 * 109.25515 * 56.84950 * 5 4 3 7 7 C 1.43018 * 113.74153 * 301.33177 * 6 5 4 8 8 H 1.09002 * 109.54123 * 298.71588 * 7 6 5 9 9 C 1.50701 * 109.50570 * 178.60397 * 7 6 5 10 10 O 1.21274 * 120.00163 * 352.65709 * 9 7 6 11 11 N 1.34779 * 119.99719 * 172.66121 * 9 7 6 12 12 C 1.46965 * 120.59025 * 174.39965 * 11 9 7 13 13 C 1.53369 * 108.63073 * 125.04754 * 12 11 9 14 14 N 1.46971 * 108.63508 * 49.42411 * 13 12 11 15 15 C 1.36938 * 120.59253 * 124.79340 * 14 13 12 16 16 H 1.07996 * 120.00168 * 328.60561 * 15 14 13 17 17 C 1.38815 * 119.99887 * 148.60803 * 15 14 13 18 18 N 1.31617 * 119.99952 * 163.10469 * 17 15 14 19 19 Si 1.86794 * 119.99908 * 343.09901 * 17 15 14 20 20 H 1.48499 * 109.47384 * 90.43823 * 19 17 15 21 21 H 1.48497 * 109.47446 * 210.44105 * 19 17 15 22 22 H 1.48501 * 109.47311 * 330.43568 * 19 17 15 23 23 C 1.46961 * 118.81084 * 304.77052 * 14 13 12 24 24 C 1.46961 * 120.59475 * 354.68080 * 11 9 7 25 25 C 1.47015 * 111.00136 * 169.99846 * 3 2 1 26 26 H 1.08993 * 109.47656 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47117 * 300.00380 * 1 2 3 28 28 H 1.09001 * 109.46420 * 59.99870 * 1 2 3 29 29 H 1.09000 * 109.47117 * 239.99620 * 2 1 3 30 30 H 1.09002 * 109.46655 * 119.99637 * 2 1 3 31 31 H 1.08993 * 109.51280 * 297.54438 * 4 3 2 32 32 H 1.09002 * 109.50478 * 57.63478 * 4 3 2 33 33 H 1.08999 * 109.51301 * 176.78648 * 5 4 3 34 34 H 1.09004 * 109.50603 * 296.91961 * 5 4 3 35 35 H 1.08999 * 109.60734 * 244.78924 * 12 11 9 36 36 H 1.08997 * 109.61185 * 5.30599 * 12 11 9 37 37 H 1.08995 * 109.61442 * 289.67949 * 13 12 11 38 38 H 1.09004 * 109.60890 * 169.16793 * 13 12 11 39 39 H 0.96997 * 119.99845 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.61095 * 295.48001 * 23 14 13 41 41 H 1.08997 * 109.60847 * 174.96956 * 23 14 13 42 42 H 1.09004 * 109.60982 * 354.69731 * 24 11 9 43 43 H 1.08997 * 109.61328 * 115.20608 * 24 11 9 44 44 H 1.09001 * 109.50872 * 62.45435 * 25 3 2 45 45 H 1.08999 * 109.54081 * 302.34413 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6767 2.0650 -1.2574 5 6 2.1517 3.5189 -1.1911 6 8 3.5573 3.5443 -0.9277 7 6 3.9268 2.8913 0.2898 8 1 3.4496 3.3926 1.1318 9 6 5.4238 2.9445 0.4550 10 8 6.1186 3.3671 -0.4447 11 7 5.9905 2.5222 1.6026 12 6 7.4527 2.4529 1.7334 13 6 7.8739 3.2686 2.9621 14 7 7.0407 2.8634 4.1029 15 6 7.6164 2.4295 5.2672 16 1 8.5612 1.9070 5.2404 17 6 6.9857 2.6613 6.4818 18 7 7.3419 1.9785 7.5492 19 14 5.6314 3.9422 6.6015 20 1 4.3186 3.3011 6.3356 21 1 5.6271 4.5323 7.9642 22 1 5.8718 5.0119 5.5998 23 6 5.5785 2.9327 3.9720 24 6 5.1573 2.1171 2.7434 25 6 3.4697 1.4310 0.2384 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.1664 1.5598 -2.0899 32 1 0.5965 2.0407 -1.4015 33 1 1.9508 4.0114 -2.1425 34 1 1.6224 4.0387 -0.3925 35 1 7.7598 1.4149 1.8606 36 1 7.9200 2.8686 0.8407 37 1 7.7302 4.3305 2.7631 38 1 8.9226 3.0748 3.1878 39 1 6.9009 2.1402 8.3978 40 1 5.2714 3.9708 3.8449 41 1 5.1113 2.5171 4.8647 42 1 4.1087 2.3109 2.5176 43 1 5.3010 1.0551 2.9425 44 1 3.9881 0.9156 -0.5702 45 1 3.6990 0.9443 1.1863 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081422348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = -51.812663 kcal Electronic energy + Delta-G solvation = -25769.906269 eV Core-core repulsion = 22209.028764 eV Total energy + Delta-G solvation = -3560.877505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75398 -40.16344 -38.63647 -37.15430 -35.76028 -33.82652 -32.94732 -31.98419 -31.78663 -29.18896 -27.85449 -25.76179 -25.10685 -24.81838 -23.55778 -22.25254 -21.46645 -20.40439 -19.00810 -18.20184 -17.75406 -17.27111 -17.22536 -16.67427 -16.43567 -16.23773 -16.00528 -15.61455 -15.47571 -15.37379 -15.15507 -14.64196 -14.61775 -14.24583 -13.97750 -13.92673 -13.57151 -13.05838 -12.88524 -12.82337 -12.77000 -12.53366 -12.51253 -12.25512 -12.05057 -11.87978 -11.79214 -11.73829 -11.59091 -10.84376 -10.81365 -10.74242 -9.95899 -9.51755 -8.85062 -8.16872 -5.56214 1.28961 1.37169 1.44135 1.51736 1.62454 2.40416 2.63312 2.78429 3.08334 3.25311 3.43368 3.59848 3.81917 3.91750 3.96785 4.03932 4.08486 4.24233 4.26413 4.27611 4.30833 4.45265 4.47998 4.50085 4.57251 4.62359 4.63996 4.67678 4.72217 4.77237 4.87262 4.91869 4.99764 5.08947 5.11464 5.35838 5.39016 5.80066 5.86186 5.92368 5.97074 6.12497 6.31571 6.86731 6.99899 7.56243 7.98010 9.02695 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.004550 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.806862 B = 6152.537456 C = 6920.253233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.538 5.538 4 C 0.015 3.985 5 C 0.056 3.944 6 O -0.386 6.386 7 C 0.084 3.916 8 H 0.104 0.896 9 C 0.519 3.481 10 O -0.568 6.568 11 N -0.597 5.597 12 C 0.105 3.895 13 C 0.134 3.866 14 N -0.618 5.618 15 C -0.253 4.253 16 H 0.055 0.945 17 C -0.026 4.026 18 N -0.955 5.955 19 Si 0.944 3.056 20 H -0.258 1.258 21 H -0.312 1.312 22 H -0.270 1.270 23 C 0.104 3.896 24 C 0.096 3.904 25 C 0.035 3.965 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.263 0.737 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.401 -2.372 -16.999 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.264 5.264 4 C -0.113 4.113 5 C -0.020 4.020 6 O -0.305 6.305 7 C 0.023 3.977 8 H 0.121 0.879 9 C 0.307 3.693 10 O -0.447 6.447 11 N -0.330 5.330 12 C -0.019 4.019 13 C 0.009 3.991 14 N -0.343 5.343 15 C -0.383 4.383 16 H 0.072 0.928 17 C -0.221 4.221 18 N -0.600 5.600 19 Si 0.773 3.227 20 H -0.184 1.184 21 H -0.241 1.241 22 H -0.195 1.195 23 C -0.021 4.021 24 C -0.027 4.027 25 C -0.094 4.094 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.145 -1.847 -17.060 23.561 hybrid contribution 0.209 0.044 0.193 0.288 sum -15.936 -1.803 -16.866 23.274 Atomic orbital electron populations 1.21760 0.93142 1.02566 1.02602 1.22203 0.97385 0.87101 1.01354 1.62311 1.11493 1.17810 1.34769 1.22923 1.03232 0.94995 0.90130 1.23027 0.79561 0.96065 1.03390 1.88082 1.25800 1.76984 1.39641 1.21868 0.90977 0.94925 0.89968 0.87900 1.20526 0.90239 0.76947 0.81632 1.90653 1.64936 1.47051 1.42064 1.48000 1.07763 1.64394 1.12873 1.22074 0.79386 1.01282 0.99125 1.21414 0.95686 0.95741 0.86306 1.44374 1.01003 1.76780 1.12134 1.18832 1.06497 1.29206 0.83739 0.92772 1.25960 1.01479 0.99901 0.94790 1.69919 1.46098 1.42680 1.01322 0.85965 0.80365 0.80913 0.75483 1.18422 1.24092 1.19504 1.21841 0.84773 0.97891 0.97642 1.22478 0.95090 1.00137 0.85017 1.22628 0.89381 0.94260 1.03099 0.90988 0.92031 0.92092 0.94683 0.90126 0.94478 0.86738 0.86072 0.91134 0.90587 0.89180 0.95482 0.90453 0.92763 0.94854 0.90821 0.87025 0.89768 0.94561 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.85 71.98 0.71 -0.85 16 2 C 0.05 0.67 5.68 86.30 0.49 1.16 16 3 N -0.54 -9.53 4.73 -895.22 -4.23 -13.76 16 4 C 0.01 0.23 5.44 86.31 0.47 0.70 16 5 C 0.06 0.99 7.01 72.02 0.50 1.50 16 6 O -0.39 -10.73 10.01 -130.08 -1.30 -12.03 16 7 C 0.08 2.19 2.37 29.88 0.07 2.26 16 8 H 0.10 2.44 7.07 -2.39 -0.02 2.42 16 9 C 0.52 17.08 7.06 87.66 0.62 17.70 16 10 O -0.57 -22.99 15.93 15.89 0.25 -22.73 16 11 N -0.60 -19.07 2.95 -818.03 -2.41 -21.48 16 12 C 0.10 3.50 6.60 86.41 0.57 4.07 16 13 C 0.13 5.17 6.67 86.41 0.58 5.74 16 14 N -0.62 -27.73 2.70 -698.21 -1.88 -29.61 16 15 C -0.25 -13.74 10.02 84.03 0.84 -12.89 16 16 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 17 C -0.03 -1.44 5.27 84.86 0.45 -1.00 16 18 N -0.95 -57.81 13.97 21.65 0.30 -57.51 16 19 Si 0.94 44.22 24.34 68.60 1.67 45.89 16 20 H -0.26 -10.87 6.58 99.48 0.65 -10.21 16 21 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.27 -12.49 6.68 99.48 0.66 -11.82 16 23 C 0.10 4.02 4.35 86.42 0.38 4.40 16 24 C 0.10 2.85 5.25 86.42 0.45 3.31 16 25 C 0.04 0.76 4.60 86.31 0.40 1.15 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.58 6.51 -2.39 -0.02 0.57 16 29 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 30 H 0.08 1.14 8.04 -2.39 -0.02 1.12 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 1.24 6.38 -2.39 -0.02 1.22 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.09 2.98 6.99 -2.39 -0.02 2.97 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 2.93 7.93 -2.39 -0.02 2.91 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.03 1.29 7.11 -2.39 -0.02 1.27 16 41 H 0.07 3.03 4.57 -2.39 -0.01 3.02 16 42 H 0.11 2.58 4.96 -2.39 -0.01 2.57 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 2.08 6.04 -2.39 -0.01 2.06 16 Total: -1.00 -70.57 338.53 -0.20 -70.77 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.88 Total: 13.22 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 6.53 Total: 27.25 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -8.22 Total: -122.36 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -1.05 Total: -34.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.67 Total: 45.89 kcal Total: -70.57 -0.20 -70.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081422348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.960 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds