Wall clock time and date at job start Tue Mar 31 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.46942 * 2 1 4 4 C 1.50704 * 109.47134 * 239.99923 * 2 1 3 5 5 O 1.21227 * 120.00187 * 240.00376 * 4 2 1 6 6 N 1.34780 * 119.99983 * 59.99997 * 4 2 1 7 7 C 1.34771 * 120.00268 * 179.97438 * 6 4 2 8 8 O 1.21536 * 119.99996 * 0.02562 * 7 6 4 9 9 N 1.34774 * 120.00057 * 180.02562 * 7 6 4 10 10 C 1.46501 * 120.00027 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47339 * 275.00076 * 10 9 7 12 12 C 1.52996 * 109.47304 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.47223 * 59.99688 * 12 11 10 14 14 C 1.52999 * 109.47473 * 300.00085 * 13 12 11 15 15 C 1.52996 * 109.46966 * 59.99758 * 14 13 12 16 16 N 1.46498 * 109.46906 * 120.00306 * 2 1 3 17 17 C 1.46502 * 120.00159 * 59.99986 * 16 2 1 18 18 C 1.36941 * 119.99867 * 239.99585 * 16 2 1 19 19 H 1.07992 * 119.99962 * 335.30352 * 18 16 2 20 20 C 1.38815 * 119.99563 * 155.29667 * 18 16 2 21 21 N 1.31612 * 120.00344 * 330.63048 * 20 18 16 22 22 Si 1.86809 * 119.99382 * 150.90897 * 20 18 16 23 23 H 1.48495 * 109.46725 * 179.72317 * 22 20 18 24 24 H 1.48493 * 109.47087 * 299.72188 * 22 20 18 25 25 H 1.48499 * 109.47128 * 59.72614 * 22 20 18 26 26 H 1.08997 * 109.47276 * 299.99649 * 1 2 3 27 27 H 1.09001 * 109.46692 * 59.99797 * 1 2 3 28 28 H 1.08998 * 109.47047 * 179.97438 * 1 2 3 29 29 H 0.97008 * 119.99518 * 359.97438 * 6 4 2 30 30 H 0.97001 * 120.00442 * 359.97438 * 9 7 6 31 31 H 1.09006 * 109.46858 * 34.99949 * 10 9 7 32 32 H 1.08997 * 109.47042 * 299.99979 * 11 10 9 33 33 H 1.08999 * 109.47431 * 59.99766 * 11 10 9 34 34 H 1.09006 * 109.46819 * 299.99829 * 12 11 10 35 35 H 1.09002 * 109.47514 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.47350 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46929 * 60.00208 * 13 12 11 38 38 H 1.09006 * 109.47143 * 300.00211 * 14 13 12 39 39 H 1.08999 * 109.47668 * 179.97438 * 14 13 12 40 40 H 1.09005 * 109.47465 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.46998 * 60.00145 * 15 14 13 42 42 H 1.09001 * 109.47170 * 272.52742 * 17 16 2 43 43 H 1.09003 * 109.47319 * 32.53200 * 17 16 2 44 44 H 1.09006 * 109.46988 * 152.52872 * 17 16 2 45 45 H 0.97000 * 120.00003 * 354.15382 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7293 -1.6961 -1.1193 6 7 1.7068 -0.2500 -2.4546 7 6 2.1564 -0.8850 -3.5551 8 8 2.8551 -1.8731 -3.4436 9 7 1.8312 -0.4242 -4.7791 10 6 2.3205 -1.1141 -5.9753 11 6 3.7229 -0.6080 -6.3183 12 6 4.2336 -1.3281 -7.5679 13 6 3.2899 -1.0483 -8.7392 14 6 1.8873 -1.5545 -8.3963 15 6 1.3767 -0.8345 -7.1467 16 7 2.0183 -0.6907 1.1961 17 6 1.6644 -2.0933 1.4279 18 6 2.8057 -0.0252 2.0975 19 1 3.3902 0.8253 1.7794 20 6 2.8522 -0.4439 3.4202 21 7 1.8072 -1.0333 3.9612 22 14 4.3957 -0.1637 4.4347 23 1 4.1887 -0.6922 5.8069 24 1 5.5393 -0.8671 3.8005 25 1 4.6857 1.2911 4.5031 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.1487 0.5385 -2.5436 30 1 1.2732 0.3643 -4.8682 31 1 2.3575 -2.1870 -5.7863 32 1 3.6859 0.4648 -6.5073 33 1 4.3952 -0.8069 -5.4837 34 1 4.2706 -2.4010 -7.3793 35 1 5.2330 -0.9678 -7.8120 36 1 3.6534 -1.5617 -9.6294 37 1 3.2529 0.0246 -8.9277 38 1 1.9243 -2.6275 -8.2077 39 1 1.2149 -1.3549 -9.2305 40 1 0.3776 -1.1954 -6.9020 41 1 1.3397 0.2384 -7.3352 42 1 0.7145 -2.1451 1.9601 43 1 1.5735 -2.6080 0.4714 44 1 2.4418 -2.5703 2.0248 45 1 0.9766 -1.0995 3.4645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120760200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:08 Heat of formation + Delta-G solvation = -84.297773 kcal Electronic energy + Delta-G solvation = -24791.201007 eV Core-core repulsion = 21228.914841 eV Total energy + Delta-G solvation = -3562.286165 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.28810 -40.33078 -38.92759 -37.47513 -35.84719 -35.06270 -33.99931 -31.70542 -31.11264 -30.14033 -28.21452 -26.11916 -24.81208 -23.62496 -23.19700 -21.98830 -21.33875 -20.97843 -19.74389 -19.35584 -18.11278 -17.11916 -16.93046 -16.56790 -16.29689 -15.96031 -15.57700 -15.44306 -15.33923 -15.19932 -14.93967 -14.71080 -14.12630 -13.83184 -13.48516 -13.41898 -13.31110 -13.14403 -12.87728 -12.76167 -12.47775 -12.37405 -12.27100 -12.09476 -11.96386 -11.90731 -11.57102 -11.49221 -11.39040 -11.24653 -11.14781 -10.81699 -10.39035 -10.11461 -9.06672 -8.30738 -5.42490 1.07735 1.31794 1.56431 1.65678 1.83704 2.24800 2.60512 2.91338 3.18622 3.38245 3.69273 3.79580 3.81508 4.00740 4.20413 4.22121 4.25669 4.29307 4.41151 4.53203 4.55569 4.57380 4.69118 4.76505 4.86508 4.87279 4.93211 4.95332 5.05167 5.10330 5.17810 5.20072 5.21494 5.29799 5.31760 5.37221 5.43476 5.52728 5.62566 5.77831 6.34646 6.60323 6.95942 7.18961 7.37542 7.69246 8.09062 8.95506 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032641 B = 0.002973 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.624096 B = 9414.917670 C = 9846.118008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.157 3.843 3 H 0.113 0.887 4 C 0.498 3.502 5 O -0.515 6.515 6 N -0.672 5.672 7 C 0.687 3.313 8 O -0.594 6.594 9 N -0.712 5.712 10 C 0.158 3.842 11 C -0.128 4.128 12 C -0.118 4.118 13 C -0.116 4.116 14 C -0.116 4.116 15 C -0.115 4.115 16 N -0.593 5.593 17 C 0.155 3.845 18 C -0.373 4.373 19 H 0.057 0.943 20 C -0.064 4.064 21 N -0.931 5.931 22 Si 1.107 2.893 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.266 1.266 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.040 0.960 29 H 0.431 0.569 30 H 0.418 0.582 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.007 0.993 43 H 0.031 0.969 44 H 0.014 0.986 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 7.661 -27.565 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.045 3.955 3 H 0.131 0.869 4 C 0.284 3.716 5 O -0.385 6.385 6 N -0.341 5.341 7 C 0.387 3.613 8 O -0.470 6.470 9 N -0.370 5.370 10 C 0.053 3.947 11 C -0.167 4.167 12 C -0.156 4.156 13 C -0.154 4.154 14 C -0.154 4.154 15 C -0.153 4.153 16 N -0.314 5.314 17 C 0.010 3.990 18 C -0.501 4.501 19 H 0.075 0.925 20 C -0.262 4.262 21 N -0.571 5.571 22 Si 0.932 3.068 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.191 1.191 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.059 0.941 29 H 0.270 0.730 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.025 0.975 43 H 0.050 0.950 44 H 0.033 0.967 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.429 5.881 -25.866 26.747 hybrid contribution -0.912 0.461 -1.055 1.468 sum -4.341 6.342 -26.921 27.996 Atomic orbital electron populations 1.22137 0.92478 1.01937 1.03856 1.20640 0.95807 0.96211 0.82862 0.86924 1.23040 0.78845 0.84597 0.85114 1.90740 1.34983 1.26408 1.86379 1.44195 1.52196 1.32579 1.05089 1.16574 0.80181 0.82727 0.81770 1.91026 1.41565 1.28206 1.86163 1.45199 1.55623 1.33527 1.02655 1.20994 0.94251 0.96104 0.83323 1.21905 0.95744 1.01391 0.97620 1.21506 0.99705 0.99850 0.94526 1.21556 0.94472 1.02179 0.97150 1.21515 0.96972 0.99740 0.97223 1.21777 0.97949 1.02857 0.92714 1.43818 1.59129 1.07299 1.21199 1.20682 0.96637 0.84950 0.96758 1.20156 1.22359 1.16409 0.91218 0.92487 1.27041 1.04497 0.99090 0.95584 1.70876 1.01571 1.46466 1.38189 0.82973 0.72297 0.77167 0.74361 1.21482 1.22025 1.19097 0.91976 0.87716 0.94080 0.72973 0.74375 0.92644 0.89998 0.95204 0.93195 0.91288 0.90977 0.90590 0.92685 0.89425 0.90553 0.88993 0.97514 0.95020 0.96702 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.09 71.98 0.65 -3.71 16 2 C 0.16 6.10 3.13 44.25 0.14 6.24 16 3 H 0.11 3.98 7.87 -2.39 -0.02 3.97 16 4 C 0.50 19.78 6.85 87.66 0.60 20.38 16 5 O -0.52 -27.10 12.86 19.90 0.26 -26.85 16 6 N -0.67 -18.40 5.13 -440.54 -2.26 -20.66 16 7 C 0.69 21.20 8.47 179.06 1.52 22.72 16 8 O -0.59 -26.33 14.41 18.93 0.27 -26.06 16 9 N -0.71 -13.33 5.08 -457.87 -2.33 -15.66 16 10 C 0.16 2.93 2.46 44.99 0.11 3.04 16 11 C -0.13 -2.42 5.49 30.59 0.17 -2.25 16 12 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 13 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 14 C -0.12 -1.11 5.92 30.59 0.18 -0.93 16 15 C -0.12 -1.16 5.39 30.59 0.16 -1.00 16 16 N -0.59 -30.90 2.45 -706.97 -1.73 -32.63 16 17 C 0.16 8.36 7.66 127.77 0.98 9.34 16 18 C -0.37 -21.27 9.38 84.03 0.79 -20.48 16 19 H 0.06 3.19 7.95 -2.91 -0.02 3.17 16 20 C -0.06 -3.71 4.62 84.86 0.39 -3.32 16 21 N -0.93 -57.37 12.76 21.65 0.28 -57.10 16 22 Si 1.11 52.60 30.01 68.60 2.06 54.66 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 1.92 7.56 -2.39 -0.02 1.90 16 28 H 0.04 1.35 7.67 -2.39 -0.02 1.33 16 29 H 0.43 6.58 8.13 -92.70 -0.75 5.83 16 30 H 0.42 3.95 8.62 -92.71 -0.80 3.15 16 31 H 0.06 1.43 7.58 -2.38 -0.02 1.41 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.01 0.37 6.85 -2.39 -0.02 0.35 16 43 H 0.03 1.65 6.21 -2.39 -0.01 1.63 16 44 H 0.01 0.85 7.35 -2.38 -0.02 0.84 16 45 H 0.26 16.09 6.41 -92.71 -0.59 15.50 16 Total: -1.00 -87.52 356.09 2.22 -85.30 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -0.38 Total: 11.58 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 6.06 Total: 27.41 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -6.04 Total: -126.05 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: 0.53 Total: -52.91 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 2.06 Total: 54.66 kcal Total: -87.52 2.22 -85.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120760200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.007 kcal (2) G-P(sol) polarization free energy of solvation -87.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds