Wall clock time and date at job start Tue Mar 31 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46751 * 2 1 4 4 C 1.34774 * 119.99759 * 180.02562 * 3 2 1 5 5 O 1.21595 * 120.00095 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00098 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00211 * 184.74841 * 6 4 3 8 8 C 1.50697 * 110.01986 * 298.28611 * 7 6 4 9 9 O 1.21277 * 120.00428 * 137.33901 * 8 7 6 10 10 N 1.34783 * 119.99509 * 317.33838 * 8 7 6 11 11 C 1.46493 * 120.00145 * 4.58679 * 10 8 7 12 12 C 1.46504 * 119.99952 * 184.58369 * 10 8 7 13 13 C 1.50706 * 109.46952 * 90.00132 * 12 10 8 14 14 H 1.08004 * 119.99954 * 359.97438 * 13 12 10 15 15 C 1.37870 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31519 * 120.00335 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47171 * 119.99903 * 17 15 13 20 20 H 1.48499 * 109.47243 * 239.99889 * 17 15 13 21 21 C 1.54272 * 110.07143 * 59.69950 * 7 6 4 22 22 C 1.54891 * 104.19337 * 95.69818 * 21 7 6 23 23 C 1.54889 * 102.75040 * 37.94446 * 22 21 7 24 24 C 1.53876 * 110.03616 * 176.88806 * 7 6 4 25 25 H 1.08994 * 109.47482 * 59.99772 * 1 2 3 26 26 H 1.09007 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46618 * 299.99651 * 1 2 3 28 28 H 1.09002 * 109.46618 * 240.00348 * 2 1 3 29 29 H 1.08993 * 109.46978 * 120.00082 * 2 1 3 30 30 H 0.97000 * 120.00281 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00389 * 4.75161 * 6 4 3 32 32 H 1.08996 * 109.47535 * 85.01853 * 11 10 8 33 33 H 1.09004 * 109.47308 * 205.02104 * 11 10 8 34 34 H 1.09007 * 109.47191 * 325.01603 * 11 10 8 35 35 H 1.08994 * 109.47270 * 210.00110 * 12 10 8 36 36 H 1.08999 * 109.47043 * 330.00291 * 12 10 8 37 37 H 0.97001 * 120.00105 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.48558 * 337.01790 * 21 7 6 39 39 H 1.09002 * 110.48646 * 214.37572 * 21 7 6 40 40 H 1.09000 * 110.75611 * 279.62521 * 22 21 7 41 41 H 1.09008 * 110.75325 * 156.26132 * 22 21 7 42 42 H 1.08998 * 110.48800 * 80.73702 * 23 22 21 43 43 H 1.09002 * 110.48457 * 203.24700 * 23 22 21 44 44 H 1.08999 * 110.03304 * 121.38089 * 24 7 6 45 45 H 1.09004 * 110.02660 * 359.95413 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1336 0.7033 -0.0005 6 7 3.7926 2.8982 -0.0010 7 6 5.2288 3.1674 -0.1066 8 6 5.9538 2.5689 1.0711 9 8 7.0031 1.9842 0.9040 10 7 5.4360 2.6834 2.3102 11 6 4.1212 3.3006 2.5005 12 6 6.1882 2.1905 3.4668 13 6 7.0635 3.2935 4.0039 14 1 7.0602 4.2644 3.5307 15 6 7.8693 3.0629 5.0986 16 7 7.8737 1.8805 5.6745 17 14 8.9548 4.4298 5.7638 18 1 8.7678 5.6538 4.9440 19 1 8.5831 4.7157 7.1729 20 1 10.3769 4.0065 5.7031 21 6 5.7822 2.5805 -1.4216 22 6 5.7617 3.7741 -2.4085 23 6 6.1741 4.9670 -1.5108 24 6 5.4780 4.6848 -0.1634 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.3880 2.1185 -0.0004 31 1 3.1651 3.6346 0.0685 32 1 3.3435 2.5502 2.3585 33 1 4.0534 3.7076 3.5094 34 1 3.9882 4.1034 1.7752 35 1 5.4929 1.8685 4.2420 36 1 6.8100 1.3482 3.1637 37 1 8.4409 1.7182 6.4445 38 1 5.1392 1.7771 -1.7812 39 1 6.8011 2.2203 -1.2796 40 1 4.7608 3.9233 -2.8136 41 1 6.4856 3.6252 -3.2098 42 1 7.2563 4.9923 -1.3833 43 1 5.8190 5.9055 -1.9367 44 1 6.1232 4.9883 0.6610 45 1 4.5302 5.2209 -0.1132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126725398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:15 Heat of formation + Delta-G solvation = -57.333229 kcal Electronic energy + Delta-G solvation = -26102.421377 eV Core-core repulsion = 22541.304482 eV Total energy + Delta-G solvation = -3561.116895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82878 -38.77063 -36.92211 -35.17830 -34.84251 -33.52116 -32.40331 -30.51011 -28.79438 -27.99704 -27.37361 -25.59184 -23.16518 -23.12514 -21.42422 -20.83494 -20.16519 -18.49423 -18.17943 -16.73499 -16.42465 -15.94028 -15.58120 -15.38229 -15.19913 -14.65791 -14.34322 -14.12521 -13.98001 -13.68436 -13.14869 -12.98196 -12.61313 -12.23547 -12.10654 -11.99025 -11.94755 -11.83582 -11.58153 -11.39140 -11.14703 -11.07081 -11.04316 -10.86741 -10.81546 -10.51742 -10.48021 -10.09490 -9.87951 -9.55487 -9.48401 -9.03081 -8.38775 -8.25509 -7.48538 -5.98472 -4.03815 2.67292 3.31882 3.37481 3.39188 3.42573 3.58843 4.06214 4.27087 4.48393 4.66571 4.68755 4.84321 4.94683 4.97107 5.17022 5.30356 5.36563 5.44384 5.53737 5.61933 5.64904 5.71520 5.75242 5.79660 5.85368 5.89308 5.96456 5.99394 6.10299 6.14828 6.22386 6.34046 6.48346 6.58773 6.72173 6.90281 7.18663 7.57524 7.67808 7.98721 8.07863 8.30295 8.57006 8.76549 8.97093 9.24490 9.61343 11.09402 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.005191 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.891802 B = 5392.328660 C = 6595.279381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.750 5.750 4 C 0.699 3.301 5 O -0.567 6.567 6 N -0.734 5.734 7 C 0.176 3.824 8 C 0.520 3.480 9 O -0.533 6.533 10 N -0.595 5.595 11 C 0.096 3.904 12 C 0.247 3.753 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.119 4.119 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.392 0.608 31 H 0.394 0.606 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.044 0.956 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.277 5.117 -14.423 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 N -0.407 5.407 4 C 0.399 3.601 5 O -0.443 6.443 6 N -0.393 5.393 7 C 0.086 3.914 8 C 0.304 3.696 9 O -0.409 6.409 10 N -0.326 5.326 11 C -0.049 4.049 12 C 0.127 3.873 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.159 4.159 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.226 0.774 31 H 0.229 0.771 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.877 3.789 -14.329 21.000 hybrid contribution -0.209 1.427 0.696 1.601 sum -15.085 5.216 -13.633 20.991 Atomic orbital electron populations 1.21999 0.94686 1.03076 1.02294 1.21108 0.93491 0.82029 1.02434 1.45159 1.05327 1.08831 1.81411 1.15950 0.82530 0.83587 0.78003 1.91032 1.54368 1.42989 1.55880 1.45561 1.07329 1.06221 1.80168 1.21087 0.78879 0.95826 0.95601 1.20147 0.85538 0.80194 0.83727 1.90628 1.23858 1.42008 1.84376 1.47918 1.18233 1.58912 1.07567 1.21684 0.85292 0.96290 1.01595 1.19256 0.91087 0.95654 0.81278 1.21478 1.24016 0.97920 1.12894 0.92504 1.24948 0.96832 0.95748 0.96646 1.69961 1.39729 1.21351 1.22239 0.86455 0.80528 0.82000 0.78492 1.19830 1.21018 1.20878 1.22634 1.03685 0.97442 0.91761 1.22515 1.00871 0.94964 0.97670 1.22347 1.01074 0.98172 0.94275 1.22391 1.01644 0.92031 0.99704 0.92200 0.90860 0.92005 0.91824 0.91583 0.77437 0.77079 0.94638 0.91548 0.92893 0.95396 0.93842 0.92822 0.90584 0.88658 0.91906 0.91357 0.90905 0.91376 0.89702 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.03 37.16 0.37 -0.67 16 2 C 0.13 1.37 6.39 -4.04 -0.03 1.34 16 3 N -0.75 -8.00 5.56 -65.22 -0.36 -8.37 16 4 C 0.70 10.59 6.37 -86.92 -0.55 10.04 16 5 O -0.57 -11.78 14.14 5.28 0.07 -11.70 16 6 N -0.73 -9.54 2.86 -52.45 -0.15 -9.69 16 7 C 0.18 2.86 0.47 -131.85 -0.06 2.80 16 8 C 0.52 11.82 5.07 -10.98 -0.06 11.76 16 9 O -0.53 -14.67 15.00 5.56 0.08 -14.59 16 10 N -0.59 -13.62 2.86 -182.95 -0.52 -14.14 16 11 C 0.10 1.64 8.92 59.84 0.53 2.17 16 12 C 0.25 6.91 5.17 -5.19 -0.03 6.88 16 13 C -0.52 -15.30 9.39 -34.44 -0.32 -15.62 16 14 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 17 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.12 -1.88 5.50 -25.07 -0.14 -2.02 16 22 C -0.12 -1.43 6.91 -24.74 -0.17 -1.61 16 23 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 24 C -0.12 -1.57 5.22 -25.61 -0.13 -1.70 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.39 2.80 8.49 -40.82 -0.35 2.46 16 31 H 0.39 3.55 7.30 -40.82 -0.30 3.25 16 32 H 0.04 0.57 6.83 -51.93 -0.35 0.21 16 33 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 34 H 0.05 0.71 4.79 -51.93 -0.25 0.46 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.40 7.36 -51.93 -0.38 1.01 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.30 6.46 -51.93 -0.34 0.96 16 39 H 0.09 1.82 6.76 -51.93 -0.35 1.47 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.33 7.67 -51.93 -0.40 0.93 16 45 H 0.08 0.74 7.28 -51.93 -0.38 0.36 16 LS Contribution 354.72 15.07 5.35 5.35 Total: -1.00 -38.10 354.72 -7.95 -46.04 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.28 Total: 3.16 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -0.85 Total: 13.48 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.30 Total: -58.90 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.16 Total: -26.29 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.10 -7.95 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126725398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.291 kcal (2) G-P(sol) polarization free energy of solvation -38.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds