Wall clock time and date at job start Tue Mar 31 2020 03:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46498 * 109.46751 * 2 1 4 4 C 1.34774 * 119.99759 * 180.02562 * 3 2 1 5 5 O 1.21595 * 120.00095 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00098 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00211 * 184.74841 * 6 4 3 8 8 C 1.50697 * 110.01986 * 298.28611 * 7 6 4 9 9 O 1.21277 * 120.00428 * 137.33901 * 8 7 6 10 10 N 1.34783 * 119.99509 * 317.33838 * 8 7 6 11 11 C 1.46493 * 120.00145 * 4.58679 * 10 8 7 12 12 C 1.46504 * 119.99952 * 184.58369 * 10 8 7 13 13 C 1.50706 * 109.46952 * 90.00132 * 12 10 8 14 14 H 1.08004 * 119.99954 * 359.97438 * 13 12 10 15 15 C 1.37870 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31519 * 120.00335 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47240 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47171 * 119.99903 * 17 15 13 20 20 H 1.48499 * 109.47243 * 239.99889 * 17 15 13 21 21 C 1.54272 * 110.07143 * 59.69950 * 7 6 4 22 22 C 1.54891 * 104.19337 * 95.69818 * 21 7 6 23 23 C 1.54889 * 102.75040 * 37.94446 * 22 21 7 24 24 C 1.53876 * 110.03616 * 176.88806 * 7 6 4 25 25 H 1.08994 * 109.47482 * 59.99772 * 1 2 3 26 26 H 1.09007 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46618 * 299.99651 * 1 2 3 28 28 H 1.09002 * 109.46618 * 240.00348 * 2 1 3 29 29 H 1.08993 * 109.46978 * 120.00082 * 2 1 3 30 30 H 0.97000 * 120.00281 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00389 * 4.75161 * 6 4 3 32 32 H 1.08996 * 109.47535 * 85.01853 * 11 10 8 33 33 H 1.09004 * 109.47308 * 205.02104 * 11 10 8 34 34 H 1.09007 * 109.47191 * 325.01603 * 11 10 8 35 35 H 1.08994 * 109.47270 * 210.00110 * 12 10 8 36 36 H 1.08999 * 109.47043 * 330.00291 * 12 10 8 37 37 H 0.97001 * 120.00105 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.48558 * 337.01790 * 21 7 6 39 39 H 1.09002 * 110.48646 * 214.37572 * 21 7 6 40 40 H 1.09000 * 110.75611 * 279.62521 * 22 21 7 41 41 H 1.09008 * 110.75325 * 156.26132 * 22 21 7 42 42 H 1.08998 * 110.48800 * 80.73702 * 23 22 21 43 43 H 1.09002 * 110.48457 * 203.24700 * 23 22 21 44 44 H 1.08999 * 110.03304 * 121.38089 * 24 7 6 45 45 H 1.09004 * 110.02660 * 359.95413 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1336 0.7033 -0.0005 6 7 3.7926 2.8982 -0.0010 7 6 5.2288 3.1674 -0.1066 8 6 5.9538 2.5689 1.0711 9 8 7.0031 1.9842 0.9040 10 7 5.4360 2.6834 2.3102 11 6 4.1212 3.3006 2.5005 12 6 6.1882 2.1905 3.4668 13 6 7.0635 3.2935 4.0039 14 1 7.0602 4.2644 3.5307 15 6 7.8693 3.0629 5.0986 16 7 7.8737 1.8805 5.6745 17 14 8.9548 4.4298 5.7638 18 1 8.7678 5.6538 4.9440 19 1 8.5831 4.7157 7.1729 20 1 10.3769 4.0065 5.7031 21 6 5.7822 2.5805 -1.4216 22 6 5.7617 3.7741 -2.4085 23 6 6.1741 4.9670 -1.5108 24 6 5.4780 4.6848 -0.1634 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.3880 2.1185 -0.0004 31 1 3.1651 3.6346 0.0685 32 1 3.3435 2.5502 2.3585 33 1 4.0534 3.7076 3.5094 34 1 3.9882 4.1034 1.7752 35 1 5.4929 1.8685 4.2420 36 1 6.8100 1.3482 3.1637 37 1 8.4409 1.7182 6.4445 38 1 5.1392 1.7771 -1.7812 39 1 6.8011 2.2203 -1.2796 40 1 4.7608 3.9233 -2.8136 41 1 6.4856 3.6252 -3.2098 42 1 7.2563 4.9923 -1.3833 43 1 5.8190 5.9055 -1.9367 44 1 6.1232 4.9883 0.6610 45 1 4.5302 5.2209 -0.1132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126725398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:14 Heat of formation + Delta-G solvation = -87.377546 kcal Electronic energy + Delta-G solvation = -26103.724196 eV Core-core repulsion = 22541.304482 eV Total energy + Delta-G solvation = -3562.419714 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19670 -40.20302 -38.34715 -36.74582 -36.19222 -35.04610 -34.36225 -31.43209 -30.13728 -29.58983 -28.79688 -27.26416 -25.17323 -23.99868 -22.52242 -22.19042 -21.40723 -20.02810 -19.28961 -18.70690 -18.21242 -17.38869 -16.89555 -16.74048 -16.44643 -16.31754 -15.77390 -15.45006 -15.26706 -14.95738 -14.61054 -14.30954 -14.10362 -13.80287 -13.52837 -13.35215 -13.22176 -13.09968 -12.80974 -12.70790 -12.64075 -12.52107 -12.36766 -12.24827 -12.22741 -12.06583 -11.90607 -11.70043 -11.50024 -11.23837 -11.04821 -10.68572 -10.20509 -9.66455 -9.42159 -8.24246 -6.41373 1.34838 1.38515 1.48926 1.51300 1.97203 2.10948 2.30474 2.46436 3.04514 3.29265 3.49022 3.50228 3.76858 4.15404 4.17275 4.26129 4.34476 4.39766 4.44736 4.52270 4.55768 4.57835 4.70754 4.79424 4.80858 4.91374 4.95678 5.01236 5.10295 5.10962 5.16934 5.21263 5.23924 5.28719 5.46514 5.48779 5.55062 5.55659 5.82450 6.00332 6.02133 6.66901 6.77680 7.13738 7.25351 7.47801 7.63506 8.83745 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.005191 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.891802 B = 5392.328660 C = 6595.279381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 N -0.727 5.727 4 C 0.694 3.306 5 O -0.630 6.630 6 N -0.714 5.714 7 C 0.188 3.812 8 C 0.504 3.496 9 O -0.598 6.598 10 N -0.603 5.603 11 C 0.093 3.907 12 C 0.262 3.738 13 C -0.539 4.539 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.976 3.024 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.283 1.283 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.116 4.116 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.415 0.585 31 H 0.420 0.580 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.013 0.987 36 H -0.016 1.016 37 H 0.267 0.733 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.033 9.011 -15.700 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.006 3.994 3 N -0.385 5.385 4 C 0.394 3.606 5 O -0.510 6.510 6 N -0.375 5.375 7 C 0.097 3.903 8 C 0.292 3.708 9 O -0.479 6.479 10 N -0.333 5.333 11 C -0.050 4.050 12 C 0.140 3.860 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.800 3.200 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.209 1.209 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.154 4.154 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.253 0.747 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.031 0.969 36 H 0.002 0.998 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.072 0.928 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.765 7.757 -15.616 24.893 hybrid contribution 0.614 0.067 1.100 1.262 sum -17.151 7.824 -14.516 23.793 Atomic orbital electron populations 1.21924 0.91020 1.04147 1.03600 1.21188 0.96296 0.81379 1.00581 1.44972 1.03979 1.09953 1.79616 1.16252 0.83420 0.83382 0.77571 1.91015 1.56388 1.45081 1.58521 1.45216 1.06361 1.06492 1.79448 1.20890 0.79729 0.97704 0.91990 1.21478 0.85178 0.79076 0.85065 1.90582 1.27039 1.44747 1.85505 1.47963 1.19897 1.59010 1.06477 1.21979 0.82424 0.97559 1.03025 1.18691 0.90600 0.94054 0.82606 1.21700 1.24752 0.98005 1.13330 0.92155 1.26007 0.98198 0.98594 0.96788 1.70107 1.40609 1.23776 1.22778 0.85243 0.77728 0.78627 0.78439 1.18369 1.19236 1.20890 1.22569 1.00683 0.99208 0.93313 1.22488 1.03019 0.92341 0.96635 1.22366 1.00010 0.99815 0.93165 1.22474 1.03879 0.89189 0.99898 0.90364 0.89995 0.91071 0.93037 0.94362 0.74742 0.73988 0.93406 0.91733 0.88416 0.96871 0.99828 0.92400 0.92069 0.93092 0.88788 0.90472 0.92801 0.87151 0.92356 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.03 71.98 0.72 -0.81 16 2 C 0.13 2.58 6.39 86.38 0.55 3.13 16 3 N -0.73 -14.14 5.56 -478.53 -2.66 -16.80 16 4 C 0.69 20.59 6.37 179.06 1.14 21.73 16 5 O -0.63 -27.49 14.14 -4.01 -0.06 -27.54 16 6 N -0.71 -16.94 2.86 -438.10 -1.25 -18.20 16 7 C 0.19 5.99 0.47 3.58 0.00 5.99 16 8 C 0.50 24.13 5.07 87.66 0.44 24.57 16 9 O -0.60 -35.93 15.00 -3.02 -0.05 -35.97 16 10 N -0.60 -28.73 2.86 -851.13 -2.43 -31.16 16 11 C 0.09 3.06 8.92 127.77 1.14 4.20 16 12 C 0.26 15.69 5.17 85.63 0.44 16.13 16 13 C -0.54 -32.61 9.39 25.60 0.24 -32.37 16 14 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -59.45 13.29 21.45 0.28 -59.16 16 17 Si 0.98 45.98 29.54 68.60 2.03 48.01 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 21 C -0.12 -3.90 5.50 31.67 0.17 -3.72 16 22 C -0.11 -2.21 6.91 31.89 0.22 -1.99 16 23 C -0.12 -2.26 6.83 31.67 0.22 -2.05 16 24 C -0.12 -2.70 5.22 31.32 0.16 -2.53 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 30 H 0.42 4.31 8.49 -92.71 -0.79 3.53 16 31 H 0.42 5.48 7.30 -92.71 -0.68 4.80 16 32 H 0.05 1.46 6.83 -2.39 -0.02 1.44 16 33 H 0.06 2.17 8.03 -2.38 -0.02 2.15 16 34 H 0.10 2.29 4.79 -2.38 -0.01 2.28 16 35 H 0.01 0.81 8.07 -2.39 -0.02 0.79 16 36 H -0.02 -1.16 7.36 -2.39 -0.02 -1.18 16 37 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 38 H 0.06 2.16 6.46 -2.39 -0.02 2.14 16 39 H 0.05 2.12 6.76 -2.39 -0.02 2.10 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.72 7.67 -2.39 -0.02 1.70 16 45 H 0.13 1.64 7.28 -2.38 -0.02 1.63 16 Total: -1.00 -94.50 354.72 1.32 -93.18 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.46 Total: 14.74 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 5.92 Total: 32.91 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -6.06 Total: -125.32 kcal Atomic # 8 Polarization: -63.41 SS G_CDS: -0.10 Total: -63.52 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -94.50 1.32 -93.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126725398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.801 kcal (2) G-P(sol) polarization free energy of solvation -94.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds