Wall clock time and date at job start Tue Mar 31 2020 03:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.34781 * 119.99633 * 184.76296 * 3 2 1 5 5 O 1.21585 * 119.99959 * 5.02340 * 4 3 2 6 6 N 1.34774 * 119.99475 * 185.02655 * 4 3 2 7 7 C 1.46503 * 119.99716 * 184.12093 * 6 4 3 8 8 C 1.50698 * 110.01732 * 294.36016 * 7 6 4 9 9 O 1.21291 * 120.00462 * 130.74779 * 8 7 6 10 10 N 1.34780 * 120.00219 * 310.74789 * 8 7 6 11 11 C 1.37096 * 120.00528 * 175.93852 * 10 8 7 12 12 H 1.08005 * 119.99846 * 322.94064 * 11 10 8 13 13 C 1.38943 * 120.00558 * 142.94086 * 11 10 8 14 14 N 1.31414 * 120.00484 * 161.04707 * 13 11 10 15 15 Si 1.86810 * 119.99742 * 341.05145 * 13 11 10 16 16 H 1.48495 * 109.47129 * 90.74743 * 15 13 11 17 17 H 1.48495 * 109.47022 * 210.74995 * 15 13 11 18 18 H 1.48502 * 109.46965 * 330.74592 * 15 13 11 19 19 C 1.46507 * 119.99807 * 355.94057 * 10 8 7 20 20 C 1.52998 * 109.47386 * 98.73821 * 19 10 8 21 21 C 1.54265 * 110.03352 * 55.75164 * 7 6 4 22 22 C 1.54964 * 104.15899 * 95.75547 * 21 7 6 23 23 C 1.54884 * 102.78002 * 37.88988 * 22 21 7 24 24 C 1.53878 * 110.03440 * 172.97216 * 7 6 4 25 25 H 1.08997 * 109.47080 * 299.99636 * 1 2 3 26 26 H 1.09006 * 109.46643 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47080 * 240.00364 * 2 1 3 29 29 H 1.09000 * 109.47157 * 120.00537 * 2 1 3 30 30 H 0.96994 * 120.00126 * 4.76656 * 3 2 1 31 31 H 0.96998 * 120.00430 * 4.12589 * 6 4 3 32 32 H 0.96998 * 119.99868 * 180.02562 * 14 13 11 33 33 H 1.09001 * 109.46932 * 338.73829 * 19 10 8 34 34 H 1.08996 * 109.47178 * 218.74146 * 19 10 8 35 35 H 1.09005 * 109.46759 * 52.91812 * 20 19 10 36 36 H 1.08996 * 109.47095 * 172.91884 * 20 19 10 37 37 H 1.08996 * 109.47317 * 292.92107 * 20 19 10 38 38 H 1.08997 * 110.48383 * 214.40413 * 21 7 6 39 39 H 1.09004 * 110.48479 * 337.04792 * 21 7 6 40 40 H 1.08997 * 110.71800 * 279.57055 * 22 21 7 41 41 H 1.09000 * 110.92365 * 156.29730 * 22 21 7 42 42 H 1.09000 * 110.49099 * 203.40816 * 23 22 21 43 43 H 1.08999 * 110.48736 * 80.76098 * 23 22 21 44 44 H 1.09007 * 110.02904 * 359.94543 * 24 7 6 45 45 H 1.08994 * 110.03522 * 121.37904 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3397 1.6288 -0.0969 5 8 4.1184 0.7124 -0.2761 6 7 3.7977 2.8923 0.0048 7 6 5.2223 3.1729 -0.1903 8 6 6.0301 2.5273 0.9059 9 8 7.0005 1.8547 0.6286 10 7 5.6742 2.6974 2.1947 11 6 6.3580 2.0434 3.1868 12 1 6.7137 1.0366 3.0243 13 6 6.5936 2.6757 4.4014 14 7 6.9011 1.9652 5.4634 15 14 6.4731 4.5358 4.5249 16 1 5.0871 4.9185 4.8957 17 1 7.4162 5.0251 5.5624 18 1 6.8205 5.1423 3.2146 19 6 4.5564 3.5810 2.5355 20 6 3.2958 2.7444 2.7629 21 6 5.6813 2.6455 -1.5654 22 6 5.5895 3.8817 -2.4954 23 6 6.0623 5.0365 -1.5778 24 6 5.4640 4.6925 -0.1980 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.3908 2.1175 0.0698 31 1 3.1842 3.6158 0.2073 32 1 7.0652 2.4067 6.3113 33 1 4.3850 4.2817 1.7183 34 1 4.7944 4.1340 3.4442 35 1 3.5059 1.9614 3.4916 36 1 2.4974 3.3849 3.1378 37 1 2.9860 2.2909 1.8215 38 1 6.7081 2.2840 -1.5119 39 1 5.0153 1.8556 -1.9128 40 1 4.5622 4.0434 -2.8217 41 1 6.2532 3.7736 -3.3532 42 1 5.6743 5.9906 -1.9346 43 1 7.1507 5.0616 -1.5261 44 1 4.5212 5.2213 -0.0576 45 1 6.1655 4.9631 0.5911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161558087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:16 Heat of formation + Delta-G solvation = -63.252049 kcal Electronic energy + Delta-G solvation = -27007.412811 eV Core-core repulsion = 23446.039257 eV Total energy + Delta-G solvation = -3561.373554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.27585 -40.22413 -38.36405 -37.18057 -36.18852 -34.91651 -34.07197 -31.53193 -31.22056 -29.88597 -28.94861 -26.82014 -24.62250 -23.98172 -22.56158 -22.49038 -21.53568 -20.19337 -19.27678 -18.89765 -18.25333 -17.91048 -16.96346 -16.70070 -16.39827 -16.22115 -15.54423 -15.38149 -15.26094 -15.00639 -14.74409 -14.49890 -14.25851 -14.08905 -13.71845 -13.35961 -13.12960 -13.00461 -12.72622 -12.66527 -12.64357 -12.55075 -12.34791 -12.19649 -12.13483 -11.95295 -11.87455 -11.55485 -11.45045 -11.16433 -11.01757 -10.74709 -10.13084 -9.73114 -9.61941 -8.52125 -6.16184 1.12318 1.27019 1.40698 1.54207 2.05921 2.14672 2.17170 2.66398 2.95514 3.32677 3.53539 3.56226 3.84863 3.98067 4.16735 4.23263 4.26225 4.33273 4.39789 4.45137 4.49104 4.55903 4.56535 4.73584 4.82055 4.84240 4.91939 4.95762 5.02147 5.10567 5.13417 5.21595 5.27305 5.29952 5.36382 5.48061 5.52159 5.55987 5.58150 5.98623 6.02137 6.57202 6.94666 7.14821 7.30644 7.65556 7.90374 8.66463 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.007559 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.799033 B = 3703.125014 C = 4896.704842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.129 3.871 3 N -0.729 5.729 4 C 0.698 3.302 5 O -0.628 6.628 6 N -0.715 5.715 7 C 0.187 3.813 8 C 0.461 3.539 9 O -0.617 6.617 10 N -0.469 5.469 11 C -0.327 4.327 12 H 0.023 0.977 13 C 0.005 3.995 14 N -0.919 5.919 15 Si 0.960 3.040 16 H -0.229 1.229 17 H -0.290 1.290 18 H -0.254 1.254 19 C 0.080 3.920 20 C -0.167 4.167 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.125 4.125 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.415 0.585 31 H 0.417 0.583 32 H 0.279 0.721 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.056 0.944 44 H 0.126 0.874 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 12.406 -13.174 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 N -0.388 5.388 4 C 0.399 3.601 5 O -0.508 6.508 6 N -0.376 5.376 7 C 0.096 3.904 8 C 0.250 3.750 9 O -0.500 6.500 10 N -0.190 5.190 11 C -0.456 4.456 12 H 0.041 0.959 13 C -0.196 4.196 14 N -0.557 5.557 15 Si 0.784 3.216 16 H -0.154 1.154 17 H -0.217 1.217 18 H -0.178 1.178 19 C -0.042 4.042 20 C -0.225 4.225 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.163 4.163 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.252 0.748 31 H 0.257 0.743 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.048 11.192 -13.249 24.319 hybrid contribution 0.477 -0.140 1.119 1.225 sum -16.571 11.052 -12.129 23.321 Atomic orbital electron populations 1.21917 0.90797 1.04166 1.03657 1.21185 0.96459 0.81419 1.00438 1.45036 1.04393 1.09971 1.79355 1.16117 0.83301 0.83271 0.77439 1.91003 1.56976 1.45352 1.57432 1.45278 1.07866 1.07749 1.76699 1.20885 0.79390 0.97169 0.92967 1.21590 0.85535 0.83312 0.84601 1.90484 1.32185 1.44127 1.83193 1.43749 1.28168 1.42574 1.04557 1.18538 1.36129 0.97314 0.93574 0.95856 1.26283 0.94928 1.04663 0.93746 1.69877 1.46467 1.38717 1.00602 0.85713 0.79288 0.77853 0.78785 1.15434 1.21731 1.17816 1.22204 0.87314 0.93508 1.01171 1.22378 0.97150 1.00473 1.02545 1.22548 1.01029 0.99281 0.92857 1.22500 1.02770 0.92261 0.97014 1.22362 1.00443 0.99880 0.92403 1.22628 1.03991 0.89519 1.00192 0.90890 0.90371 0.89964 0.93065 0.94680 0.74767 0.74335 0.91112 0.87298 0.92887 0.95994 0.88176 0.90878 0.93250 0.92088 0.89028 0.90423 0.86975 0.92510 0.85611 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.03 71.98 0.72 -1.12 16 2 C 0.13 2.98 6.42 86.38 0.55 3.53 16 3 N -0.73 -16.66 4.81 -478.52 -2.30 -18.96 16 4 C 0.70 23.50 5.73 179.05 1.03 24.52 16 5 O -0.63 -29.98 13.97 -3.98 -0.06 -30.03 16 6 N -0.72 -19.96 2.67 -438.11 -1.17 -21.13 16 7 C 0.19 6.59 0.47 3.58 0.00 6.59 16 8 C 0.46 23.88 5.30 87.66 0.46 24.34 16 9 O -0.62 -39.41 15.29 -3.06 -0.05 -39.45 16 10 N -0.47 -24.37 2.23 -635.53 -1.41 -25.79 16 11 C -0.33 -20.96 9.25 84.04 0.78 -20.18 16 12 H 0.02 1.81 7.94 -2.91 -0.02 1.78 16 13 C 0.00 0.28 5.38 84.92 0.46 0.73 16 14 N -0.92 -57.82 13.96 21.66 0.30 -57.52 16 15 Si 0.96 42.98 24.98 68.60 1.71 44.70 16 16 H -0.23 -8.62 6.56 99.48 0.65 -7.97 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 19 C 0.08 3.03 4.56 86.38 0.39 3.43 16 20 C -0.17 -5.62 9.72 71.98 0.70 -4.92 16 21 C -0.12 -4.24 5.43 31.69 0.17 -4.07 16 22 C -0.11 -2.42 6.91 31.91 0.22 -2.20 16 23 C -0.11 -2.32 6.83 31.67 0.22 -2.11 16 24 C -0.13 -3.15 4.56 31.32 0.14 -3.00 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.41 5.61 8.50 -92.71 -0.79 4.82 16 31 H 0.42 7.23 7.01 -92.71 -0.65 6.58 16 32 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 33 H 0.11 3.06 3.81 -2.39 -0.01 3.05 16 34 H 0.05 2.09 2.47 -2.39 -0.01 2.09 16 35 H 0.02 0.92 8.08 -2.38 -0.02 0.90 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.25 3.11 -2.39 -0.01 2.24 16 38 H 0.05 2.19 6.78 -2.39 -0.02 2.18 16 39 H 0.06 2.38 6.10 -2.39 -0.01 2.36 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.13 1.86 6.99 -2.38 -0.02 1.85 16 45 H 0.06 1.82 7.62 -2.39 -0.02 1.80 16 Total: -1.00 -97.63 337.33 2.41 -95.22 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.47 Total: 27.42 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 5.85 Total: 25.55 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -4.58 Total: -123.39 kcal Atomic # 8 Polarization: -69.39 SS G_CDS: -0.10 Total: -69.49 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.71 Total: 44.70 kcal Total: -97.63 2.41 -95.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161558087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.970 kcal (2) G-P(sol) polarization free energy of solvation -97.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds