Wall clock time and date at job start Tue Mar 31 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99412 * 2 1 4 4 N 1.34769 * 120.00689 * 180.02562 * 2 1 3 5 5 C 1.46972 * 120.58967 * 359.71344 * 4 2 1 6 6 C 1.53811 * 108.39489 * 124.76152 * 5 4 2 7 7 N 1.46975 * 108.57837 * 49.64006 * 6 5 4 8 8 C 1.34773 * 120.59438 * 124.66666 * 7 6 5 9 9 O 1.21285 * 120.00233 * 175.33308 * 8 7 6 10 10 C 1.50705 * 120.00016 * 355.33701 * 8 7 6 11 11 H 1.08997 * 109.47181 * 34.96077 * 10 8 7 12 12 C 1.52998 * 109.47134 * 274.95945 * 10 8 7 13 13 N 1.46904 * 109.47268 * 154.96093 * 10 8 7 14 14 C 1.46902 * 110.99943 * 298.92187 * 13 10 8 15 15 C 1.46898 * 111.00057 * 174.96402 * 13 10 8 16 16 C 1.50701 * 109.46892 * 189.99821 * 15 13 10 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99577 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46805 * 90.00332 * 20 18 16 22 22 H 1.48499 * 109.46864 * 210.00192 * 20 18 16 23 23 H 1.48496 * 109.47301 * 330.00260 * 20 18 16 24 24 C 1.46965 * 118.81037 * 304.64348 * 7 6 5 25 25 C 1.46966 * 120.59924 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.46658 * 239.99311 * 1 2 3 27 27 H 1.08993 * 109.47406 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46721 * 120.00308 * 1 2 3 29 29 H 1.09004 * 109.61047 * 244.54270 * 5 4 2 30 30 H 1.08997 * 109.60820 * 5.05994 * 5 4 2 31 31 H 1.08994 * 109.74709 * 289.84828 * 6 5 4 32 32 H 1.09003 * 109.53495 * 169.29967 * 6 5 4 33 33 H 1.09004 * 109.46970 * 52.80992 * 12 10 8 34 34 H 1.08994 * 109.47269 * 172.80744 * 12 10 8 35 35 H 1.09000 * 109.46959 * 292.81316 * 12 10 8 36 36 H 1.09001 * 109.47324 * 65.52280 * 14 13 10 37 37 H 1.08992 * 109.47349 * 185.53049 * 14 13 10 38 38 H 1.09000 * 109.46982 * 305.53081 * 14 13 10 39 39 H 1.09001 * 109.47206 * 310.00256 * 15 13 10 40 40 H 1.09004 * 109.46929 * 70.00150 * 15 13 10 41 41 H 0.97004 * 119.99792 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.61129 * 295.48424 * 24 7 6 43 43 H 1.08995 * 109.60419 * 174.97249 * 24 7 6 44 44 H 1.08997 * 109.60533 * 354.94002 * 25 4 2 45 45 H 1.08993 * 109.61285 * 115.45518 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4594 -2.4474 0.0052 6 6 1.9409 -3.2813 -1.1942 7 7 3.4106 -3.2965 -1.1942 8 6 4.0845 -4.4636 -1.1946 9 8 5.2943 -4.4653 -1.2800 10 6 3.3348 -5.7667 -1.0890 11 1 2.3844 -5.6828 -1.6160 12 6 3.0744 -6.0873 0.3842 13 7 4.1349 -6.8421 -1.6901 14 6 4.3835 -6.5803 -3.1141 15 6 3.4894 -8.1479 -1.4997 16 6 4.4423 -9.2430 -1.9046 17 1 5.4288 -8.9938 -2.2668 18 6 4.0549 -10.5630 -1.8118 19 7 2.8538 -10.8663 -1.3703 20 14 5.2362 -11.9205 -2.3130 21 1 6.0436 -12.3332 -1.1370 22 1 4.4660 -13.0853 -2.8182 23 1 6.1380 -11.4220 -3.3823 24 6 4.1320 -2.0161 -1.1942 25 6 3.6505 -1.1822 0.0000 26 1 -0.3633 -0.5140 0.8899 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6683 -2.9810 0.9326 30 1 0.3884 -2.2642 -0.0811 31 1 1.5797 -2.8359 -2.1211 32 1 1.5646 -4.3004 -1.1042 33 1 2.5928 -5.2341 0.8621 34 1 2.4244 -6.9591 0.4569 35 1 4.0206 -6.2968 0.8831 36 1 5.0082 -5.6930 -3.2168 37 1 4.8922 -7.4362 -3.5575 38 1 3.4343 -6.4173 -3.6246 39 1 3.2197 -8.2703 -0.4507 40 1 2.5910 -8.2022 -2.1146 41 1 2.5812 -11.7950 -1.3053 42 1 3.9268 -1.4805 -2.1212 43 1 5.2027 -2.1996 -1.1042 44 1 4.0269 -0.1632 -0.0897 45 1 4.0115 -1.6279 0.9269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177188787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:06 Heat of formation + Delta-G solvation = -44.924054 kcal Electronic energy + Delta-G solvation = -25193.522309 eV Core-core repulsion = 21632.943516 eV Total energy + Delta-G solvation = -3560.578793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75394 -39.59829 -37.31873 -36.24725 -34.20544 -32.81446 -32.20005 -30.54774 -30.01527 -27.81537 -27.31298 -24.51304 -24.48952 -23.77899 -22.52532 -20.82147 -19.66679 -18.34691 -17.61499 -16.71451 -16.51717 -16.30448 -15.87996 -15.75681 -15.42881 -14.68089 -14.51842 -14.25945 -14.02641 -13.86372 -13.69884 -13.17097 -13.08628 -12.63110 -12.61125 -12.48712 -12.18821 -11.97303 -11.85374 -11.77623 -11.73470 -11.56088 -11.16092 -10.95994 -10.88169 -10.62451 -10.46705 -10.15309 -9.97138 -9.49292 -9.33112 -9.14733 -8.51293 -8.43672 -7.27174 -6.05601 -4.05634 2.28034 2.49169 2.84316 2.99675 3.32203 3.37982 3.42640 4.16495 4.36992 4.43281 4.45832 4.75823 4.77750 4.81586 4.84089 4.91078 4.94571 5.06342 5.11928 5.28700 5.31273 5.41185 5.46426 5.48986 5.53941 5.55283 5.68874 5.88770 6.07767 6.11569 6.21639 6.29553 6.40302 6.55842 6.78048 7.00177 7.18845 7.25310 7.35923 7.77464 7.81061 8.00943 8.13570 8.38652 8.51816 9.02058 9.58359 11.05380 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.003130 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.703310 B = 8942.568694 C = 9367.010862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.091 3.909 6 C 0.090 3.910 7 N -0.623 5.623 8 C 0.524 3.476 9 O -0.512 6.512 10 C 0.068 3.932 11 H 0.048 0.952 12 C -0.138 4.138 13 N -0.518 5.518 14 C 0.034 3.966 15 C 0.190 3.810 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 C 0.100 3.900 25 C 0.097 3.903 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.006 0.994 39 H 0.040 0.960 40 H -0.010 1.010 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 18.550 2.824 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.033 4.033 6 C -0.035 4.035 7 N -0.360 5.360 8 C 0.312 3.688 9 O -0.384 6.384 10 C -0.045 4.045 11 H 0.066 0.934 12 C -0.196 4.196 13 N -0.244 5.244 14 C -0.115 4.115 15 C 0.065 3.935 16 C -0.544 4.544 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.198 1.198 24 C -0.023 4.023 25 C -0.026 4.026 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.754 18.915 3.048 20.314 hybrid contribution -0.415 -0.899 -0.698 1.211 sum -7.169 18.016 2.350 19.532 Atomic orbital electron populations 1.21951 0.91634 1.05544 1.04277 1.20867 0.90720 0.82914 0.75300 1.90718 1.70804 1.30999 1.50097 1.48129 1.07058 1.06047 1.73590 1.22335 0.97293 0.84168 0.99491 1.22275 0.80756 1.02217 0.98203 1.48149 1.06271 1.05839 1.75739 1.20986 0.88241 0.84715 0.74855 1.90672 1.14076 1.86586 1.47111 1.21595 0.94386 0.90277 0.98208 0.93435 1.21804 1.03346 1.01491 0.92937 1.61981 1.46362 1.01937 1.14077 1.22298 0.98548 1.01986 0.88622 1.19872 0.93138 0.83084 0.97358 1.21162 1.00432 0.90046 1.42756 0.91746 1.24962 0.95338 0.98741 0.95501 1.69947 1.18453 1.18498 1.47104 0.86487 0.80781 0.81213 0.78890 1.20596 1.21353 1.19841 1.21901 0.98966 0.83696 0.97760 1.22039 0.79482 1.02220 0.98835 0.89243 0.88965 0.89204 0.90194 0.88268 0.90875 0.87727 0.93144 0.90380 0.90937 0.92924 0.90153 0.97591 0.94237 0.99179 0.92942 0.91393 0.87747 0.87936 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 8.66 36.00 0.31 -0.62 16 2 C 0.51 4.96 7.81 -10.99 -0.09 4.87 16 3 O -0.55 -7.63 16.49 5.55 0.09 -7.54 16 4 N -0.61 -5.42 2.94 -172.19 -0.51 -5.93 16 5 C 0.09 0.60 6.54 -3.36 -0.02 0.58 16 6 C 0.09 0.76 6.46 -3.36 -0.02 0.74 16 7 N -0.62 -7.53 2.95 -172.18 -0.51 -8.04 16 8 C 0.52 8.54 6.03 -10.98 -0.07 8.47 16 9 O -0.51 -10.32 14.83 5.55 0.08 -10.24 16 10 C 0.07 1.15 1.64 -68.86 -0.11 1.04 16 11 H 0.05 0.74 6.23 -51.93 -0.32 0.42 16 12 C -0.14 -2.13 8.44 37.16 0.31 -1.82 16 13 N -0.52 -11.33 4.32 -237.73 -1.03 -12.36 16 14 C 0.03 0.70 9.03 60.07 0.54 1.24 16 15 C 0.19 4.77 4.45 -4.98 -0.02 4.75 16 16 C -0.51 -14.08 8.38 -34.44 -0.29 -14.37 16 17 H 0.06 1.82 7.17 -52.49 -0.38 1.44 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.10 1.10 6.58 -3.58 -0.02 1.08 16 25 C 0.10 0.96 6.59 -3.58 -0.02 0.94 16 26 H 0.09 0.32 7.90 -51.93 -0.41 -0.09 16 27 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.09 0.33 7.73 -51.93 -0.40 -0.08 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.36 5.91 -51.93 -0.31 0.05 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.87 5.36 -51.93 -0.28 0.59 16 33 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 34 H 0.08 1.27 6.55 -51.93 -0.34 0.93 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.05 6.53 -51.93 -0.34 0.72 16 37 H 0.08 1.77 6.65 -51.93 -0.35 1.43 16 38 H 0.01 0.11 8.12 -51.93 -0.42 -0.31 16 39 H 0.04 1.02 5.84 -51.93 -0.30 0.72 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 1.29 7.02 -51.93 -0.36 0.92 16 44 H 0.10 1.07 6.99 -51.93 -0.36 0.70 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -34.92 353.16 -7.52 -42.43 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -7.09 Total: -3.27 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.40 Total: 8.36 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -1.31 Total: -51.61 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.17 Total: -17.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.92 -7.52 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.490 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds